BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV534454.r
(348 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86147 protein T1N6.6 [imported] - Arabidopsis thalian... 133 5e-31
ref|NP_171675.1| hypothetical protein; protein id: At1g0169... 112 9e-25
gb|ZP_00044170.1| hypothetical protein [Magnetococcus sp. M... 34 0.40
dbj|BAB00633.1| tyrosine phosphatase [Ciona intestinalis] 30 5.7
ref|NP_611894.1| CG3363-PA [Drosophila melanogaster]|gi|729... 30 5.7
>pir||G86147 protein T1N6.6 [imported] - Arabidopsis
thaliana|gi|8671857|gb|AAF78420.1|AC009273_26 T1N6.6
[Arabidopsis thaliana]
Length = 832
Score = 133 bits (335), Expect = 5e-31
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = -2
Query: 347 PVKSESTRTQFEQCSVVIDSDEEDIDGGFSCLINENTRGTNFEWDAEKETERILRTARRT 168
PVKSESTRTQFEQCSVVIDSDEEDIDGGFSCLINENTRGTNFEWDAEKETERILRTARRT
Sbjct: 377 PVKSESTRTQFEQCSVVIDSDEEDIDGGFSCLINENTRGTNFEWDAEKETERILRTARRT 436
Query: 167 KRKF 156
KRKF
Sbjct: 437 KRKF 440
>ref|NP_171675.1| hypothetical protein; protein id: At1g01690.1 [Arabidopsis
thaliana]
Length = 741
Score = 112 bits (281), Expect = 9e-25
Identities = 53/54 (98%), Positives = 54/54 (99%)
Frame = -2
Query: 320 QFEQCSVVIDSDEEDIDGGFSCLINENTRGTNFEWDAEKETERILRTARRTKRK 159
+FEQCSVVIDSDEEDIDGGFSCLINENTRGTNFEWDAEKETERILRTARRTKRK
Sbjct: 334 KFEQCSVVIDSDEEDIDGGFSCLINENTRGTNFEWDAEKETERILRTARRTKRK 387
>gb|ZP_00044170.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 408
Score = 34.3 bits (77), Expect = 0.40
Identities = 14/32 (43%), Positives = 20/32 (61%)
Frame = -2
Query: 266 GFSCLINENTRGTNFEWDAEKETERILRTARR 171
GF+C+I TR F+ D +T+ +L TARR
Sbjct: 12 GFACVITLKTRSARFDMDKSMQTQSLLATARR 43
>dbj|BAB00633.1| tyrosine phosphatase [Ciona intestinalis]
Length = 987
Score = 30.4 bits (67), Expect = 5.7
Identities = 26/94 (27%), Positives = 40/94 (41%), Gaps = 5/94 (5%)
Frame = -2
Query: 293 DSDEEDIDGGFSC----LINENTRGTNFEWDAEKETERILRTARRTKRKFXXXXXXXXXX 126
D+DEED+D G + L + F W + I++ + + K+ +
Sbjct: 233 DNDEEDLDVGVTSTGMLLYQNGFKKNEFRWSS------IVKISFKRKQFYVQLRSAAKK- 285
Query: 125 XNLEVGGA*P-PLFYMSISEACLRLFKIGIDFHS 27
EV P F+M AC RL+K +DFHS
Sbjct: 286 ---EVNAIEPIHSFHMENYRACKRLWKSCVDFHS 316
>ref|NP_611894.1| CG3363-PA [Drosophila melanogaster]|gi|7291758|gb|AAF47179.1|
CG3363-PA [Drosophila melanogaster]
Length = 2175
Score = 30.4 bits (67), Expect = 5.7
Identities = 18/37 (48%), Positives = 22/37 (58%)
Frame = -2
Query: 302 VVIDSDEEDIDGGFSCLINENTRGTNFEWDAEKETER 192
VVIDSDEED DG +I+E E D ++E ER
Sbjct: 1748 VVIDSDEEDDDGERQLVIDEQD-DEQAETDVKQEVER 1783
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 91
effective length of database: 307,335,355
effective search space used: 7376048520
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)