BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01680.f
(849 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171674.1| hypothetical protein; protein id: At1g0168... 546 e-154
pir||F86147 hypothetical protein T1N6.5 [imported] - Arabid... 513 e-144
pir||E86147 T1N6.4 protein - Arabidopsis thaliana|gi|867183... 138 9e-32
dbj|BAC42729.1| unknown protein [Arabidopsis thaliana] 138 9e-32
ref|NP_171673.1| hypothetical protein; protein id: At1g0167... 122 6e-27
>ref|NP_171674.1| hypothetical protein; protein id: At1g01680.1 [Arabidopsis
thaliana]
Length = 282
Score = 546 bits (1407), Expect = e-154
Identities = 270/282 (95%), Positives = 270/282 (95%)
Frame = +1
Query: 1 MEDAIYVAVNQDVRETSRLEQSEIDAIQDSELNTSVNSLYKYRDICINKGVNEKDVDTSM 180
MEDAIYVAVNQDVRETSRLEQSEIDAIQDSELNTSVNSLYKYRDICINKGVNEKDVDTSM
Sbjct: 1 MEDAIYVAVNQDVRETSRLEQSEIDAIQDSELNTSVNSLYKYRDICINKGVNEKDVDTSM 60
Query: 181 ISGHDVGEGIVELIYQNIITNLVMGAAADPHYSRGMSITSRKAEYVSQHAPHSCKIWFIC 360
ISGHDVGEGIVELIYQNIITNLVMGAAADPHYSRGMSITSRKAEYVSQHAPHSCKIWFIC
Sbjct: 61 ISGHDVGEGIVELIYQNIITNLVMGAAADPHYSRGMSITSRKAEYVSQHAPHSCKIWFIC 120
Query: 361 KGKLIKQRERSFYLGNPSDSFSEFSTSAEKPISKGRRRDXXXXXXXXXXXXGWILEPEES 540
KGKLIKQRERSFYLGNPSDSFSEFSTSAEKPISKGRRRD GWILEPEES
Sbjct: 121 KGKLIKQRERSFYLGNPSDSFSEFSTSAEKPISKGRRRDEEEEPESPKEHPGWILEPEES 180
Query: 541 PKKGRKETIEKSKSNESDEDPRLEDFKCPISMVRIFEEIMRDPHVAADGFTYEAEEFRKW 720
PKKGRKETIEKSKSNESDEDPRLEDFKCPISMVRIFEEIMRDPHVAADGFTYEAEEFRKW
Sbjct: 181 PKKGRKETIEKSKSNESDEDPRLEDFKCPISMVRIFEEIMRDPHVAADGFTYEAEEFRKW 240
Query: 721 LRSGGRTSPKTNKPLENHNLVPNHTLRIIIKDWLEKNPNYKR 846
LRSGGRTSPKTNKPLENHNLVPNHTLRIIIKDWLEKNPNYKR
Sbjct: 241 LRSGGRTSPKTNKPLENHNLVPNHTLRIIIKDWLEKNPNYKR 282
>pir||F86147 hypothetical protein T1N6.5 [imported] - Arabidopsis
thaliana|gi|8671835|gb|AAF78398.1|AC009273_4 Contains
similarity to a putative protein T2J13.100 gi|6522560
from Arabidopsis thaliana BAC T2J13 gb|AL132967
Length = 308
Score = 513 bits (1321), Expect = e-144
Identities = 264/313 (84%), Positives = 265/313 (84%), Gaps = 31/313 (9%)
Frame = +1
Query: 1 MEDAIYVAVNQDVRET-------------------------------SRLEQSEIDAIQD 87
MEDAIYVAVNQDVRE+ SRLEQSEIDAIQD
Sbjct: 1 MEDAIYVAVNQDVRESKKTLLWALKNLQVKKIFLLHVHLPFSLTTSSSRLEQSEIDAIQD 60
Query: 88 SELNTSVNSLYKYRDICINKGVNEKDVDTSMISGHDVGEGIVELIYQNIITNLVMGAAAD 267
SELNTSVNSLYKYRDICINKGVNEKDVDTSMISGHDVGEGIVELIYQNIITNLVMGAAAD
Sbjct: 61 SELNTSVNSLYKYRDICINKGVNEKDVDTSMISGHDVGEGIVELIYQNIITNLVMGAAAD 120
Query: 268 PHYSRGMSITSRKAEYVSQHAPHSCKIWFICKGKLIKQRERSFYLGNPSDSFSEFSTSAE 447
PHYSRGMSITSRKAEYVSQHAPHSCKIWFICKGKLIKQRERSFYLGNPSDSFSEFSTSAE
Sbjct: 121 PHYSRGMSITSRKAEYVSQHAPHSCKIWFICKGKLIKQRERSFYLGNPSDSFSEFSTSAE 180
Query: 448 KPISKGRRRDXXXXXXXXXXXXGWILEPEESPKKGRKETIEKSKSNESDEDPRLEDFKCP 627
KPISKGRRRD GWILEPEESPKKGRKETIEKSKSNESDEDPRLEDFKCP
Sbjct: 181 KPISKGRRRDEEEEPESPKEHPGWILEPEESPKKGRKETIEKSKSNESDEDPRLEDFKCP 240
Query: 628 ISMVRIFEEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPLENHNLVPNHTLRII 807
ISM EIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPLENHNLVPNHTLRII
Sbjct: 241 ISM-----EIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPLENHNLVPNHTLRII 295
Query: 808 IKDWLEKNPNYKR 846
IKDWLEKNPNYKR
Sbjct: 296 IKDWLEKNPNYKR 308
>pir||E86147 T1N6.4 protein - Arabidopsis
thaliana|gi|8671834|gb|AAF78397.1|AC009273_3 Contains
similarity to a putative protein T2J13.100 gi|6522560
from Arabidopsis thaliana BAC T2J13 gb|AL132967
Length = 952
Score = 138 bits (348), Expect = 9e-32
Identities = 78/163 (47%), Positives = 96/163 (58%), Gaps = 32/163 (19%)
Frame = +1
Query: 4 EDAIYVAVNQDVRE-------------------------------TSRLEQSEIDAIQDS 90
+D +YVAV++DV + +S LEQSEIDAIQ+
Sbjct: 8 DDPVYVAVSEDVDQSRLTLLWALKTLRAKKLHLLHVHQLISMTPSSSGLEQSEIDAIQEL 67
Query: 91 ELNTSVNSLYKYRDICINKGVNEKDVDTSMISGHDVGEGIVELIYQNIITNLVMGAAADP 270
E + ++L KY DICI++GV E+DVD S S + VGE IVELIYQN I L+MGA AD
Sbjct: 68 EQTSRNDTLLKYHDICIDEGVIEQDVDMSCFSANSVGEWIVELIYQNNIKKLIMGATADS 127
Query: 271 HYSRGM-SITSRKAEYVSQHAPHSCKIWFICKGKLIKQRERSF 396
HYS GM IT KA+YV QHAPH C IW +C G LI+ RE F
Sbjct: 128 HYSEGMVHITPTKADYVIQHAPHCCNIWLVCNGNLIQTREGRF 170
Score = 95.1 bits (235), Expect = 1e-18
Identities = 58/150 (38%), Positives = 83/150 (54%), Gaps = 23/150 (15%)
Frame = +1
Query: 7 DAIYVAVNQDVRETS--------RLEQSEIDAIQDSELNTS--------------VNSLY 120
D ++VAV DVRE+ L ++ + + T+ +L+
Sbjct: 387 DVVHVAVKSDVRESRSTLLWALRNLGAKKVCILHVYQPKTASPAARKLEELEAIMYETLH 446
Query: 121 KYRDICINKGVNEKDVDTSMISGHDVGEGIVELIYQNIITNLVMGAAADPHYSRGM-SIT 297
Y D C +GVNE D+ S I +DV +GI+ELI+++ I LVMGAA+D HYS M +
Sbjct: 447 DYFDFCQQEGVNEDDIYISCIEMNDVKQGILELIHESKIKKLVMGAASDHHYSEKMFDLK 506
Query: 298 SRKAEYVSQHAPHSCKIWFICKGKLIKQRE 387
SRKA+YV QHAP SC++ F+C G LI +E
Sbjct: 507 SRKAKYVYQHAPSSCEVMFMCDGHLIYTKE 536
Score = 90.5 bits (223), Expect = 3e-17
Identities = 47/88 (53%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Frame = +1
Query: 580 SNESDEDPRLED----FKCPISMVRIFEEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSP 747
S SDED F CPIS +E+MR+P VAADGFTYEAE R+WL +G TSP
Sbjct: 869 SGFSDEDSVTRQPPSYFICPIS-----QEVMREPRVAADGFTYEAESLREWLDNGHETSP 923
Query: 748 KTNKPLENHNLVPNHTLRIIIKDWLEKN 831
TN L ++NLVPNH LR I++WL++N
Sbjct: 924 MTNLKLAHNNLVPNHALRSAIQEWLQRN 951
>dbj|BAC42729.1| unknown protein [Arabidopsis thaliana]
Length = 365
Score = 138 bits (348), Expect = 9e-32
Identities = 71/118 (60%), Positives = 84/118 (71%), Gaps = 1/118 (0%)
Frame = +1
Query: 46 TSRLEQSEIDAIQDSELNTSVNSLYKYRDICINKGVNEKDVDTSMISGHDVGEGIVELIY 225
+S LEQSEIDAIQ+ E + ++L KY DICI++GV E+DVD S S + VGE IVELIY
Sbjct: 5 SSGLEQSEIDAIQELEQTSRNDTLLKYHDICIDEGVIEQDVDMSCFSANSVGEWIVELIY 64
Query: 226 QNIITNLVMGAAADPHYSRGM-SITSRKAEYVSQHAPHSCKIWFICKGKLIKQRERSF 396
QN I L+MGA AD HYS GM IT KA+YV QHAPH C IW +C G LI+ RE F
Sbjct: 65 QNNIKKLIMGATADSHYSEGMVHITPTKADYVIQHAPHCCNIWLVCNGNLIQTREGRF 122
Score = 95.1 bits (235), Expect = 1e-18
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = +1
Query: 616 FKCPISMVRIFEEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPLENHNLVPNHT 795
F CPIS ++IM++PHVAADG+TYEA+EFR+WL GG SP TN LEN NL+PN
Sbjct: 298 FICPIS-----KDIMQNPHVAADGYTYEADEFRRWLNHGGEKSPMTNLRLENRNLIPNLV 352
Query: 796 LRIIIKDWLEKNP 834
LR IKDWL+++P
Sbjct: 353 LRSAIKDWLQQHP 365
>ref|NP_171673.1| hypothetical protein; protein id: At1g01670.1 [Arabidopsis
thaliana]
Length = 407
Score = 122 bits (306), Expect = 6e-27
Identities = 72/163 (44%), Positives = 93/163 (56%), Gaps = 32/163 (19%)
Frame = +1
Query: 4 EDAIYVAVNQDVRE-------------------------------TSRLEQSEIDAIQDS 90
+D +YVAV++DV + +S LEQSEIDAIQ+
Sbjct: 8 DDPVYVAVSEDVDQSRLTLLWALKTLRAKKLHLLHVHQLISMTPSSSGLEQSEIDAIQEL 67
Query: 91 ELNTSVNSLYKYRDICINKGVNEKDVDTSMISGHDVGEGIVELIYQNIITNLVMGAAADP 270
E + ++L KY DICI++GV +++ + + VGE IVELIYQN I L+MGA AD
Sbjct: 68 EQTSRNDTLLKYHDICIDEGV------SALPTTNSVGEWIVELIYQNNIKKLIMGATADS 121
Query: 271 HYSRGM-SITSRKAEYVSQHAPHSCKIWFICKGKLIKQRERSF 396
HYS GM IT KA+YV QHAPH C IW +C G LI+ RE F
Sbjct: 122 HYSEGMVHITPTKADYVIQHAPHCCNIWLVCNGNLIQTREGRF 164
Score = 95.1 bits (235), Expect = 1e-18
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = +1
Query: 616 FKCPISMVRIFEEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPLENHNLVPNHT 795
F CPIS ++IM++PHVAADG+TYEA+EFR+WL GG SP TN LEN NL+PN
Sbjct: 340 FICPIS-----KDIMQNPHVAADGYTYEADEFRRWLNHGGEKSPMTNLRLENRNLIPNLV 394
Query: 796 LRIIIKDWLEKNP 834
LR IKDWL+++P
Sbjct: 395 LRSAIKDWLQQHP 407
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.316 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 122
effective length of database: 265,824,929
effective search space used: 42531988640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)