BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= T45734.x
(509 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA53476.1| plasma membrane intrinsic protein 1c [Arabi... 173 2e-43
gb|AAL32688.1| plasma membrane intrinsic protein 1C (transm... 173 4e-43
ref|NP_171668.1| plasma membrane intrinsic protein 1c, puta... 173 4e-43
pir||T01528 probable plasma membrane intrinsic protein 1c -... 169 9e-42
ref|NP_567178.1| probable plasma membrane intrinsic protein... 169 9e-42
>emb|CAA53476.1| plasma membrane intrinsic protein 1c [Arabidopsis thaliana]
Length = 286
Score = 173 bits (439), Expect(2) = 2e-43
Identities = 87/98 (88%), Positives = 87/98 (88%)
Frame = +3
Query: 42 MEGKEEDVRVGANKFPERQPIGTSAQTDKDYKXXXXXXXXXXGELSSWSFYRAGIAEFIA 221
MEGKEEDVRVGANKFPERQPIGTSAQTDKDYK GELSSWSFYRAGIAEFIA
Sbjct: 1 MEGKEEDVRVGANKFPERQPIGTSAQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIA 60
Query: 222 TFLFLYITVLTVMGVKRAPNMCASXGIQGIAWAFGGMI 335
TFLFLYITVLTVMGVKRAPNMCAS GIQGIAWAFGGMI
Sbjct: 61 TFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMI 98
Score = 23.9 bits (50), Expect(2) = 2e-43
Identities = 17/45 (37%), Positives = 20/45 (43%)
Frame = +2
Query: 356 TAGIFGGDINPXGAIWVFFLGXXV*IXGXFF*XGXXXFXAIWGPG 490
TAGI GG INP + FL + + F F AI G G
Sbjct: 105 TAGISGGHINP-AVTFGLFLARKLSLTRAVFYIVMQCFGAICGAG 148
>gb|AAL32688.1| plasma membrane intrinsic protein 1C (transmembrane protein B)
[Arabidopsis thaliana]|gi|25083740|gb|AAN72112.1| plasma
membrane intrinsic protein 1C (transmembrane protein B)
[Arabidopsis thaliana]
Length = 286
Score = 173 bits (439), Expect(2) = 4e-43
Identities = 87/98 (88%), Positives = 87/98 (88%)
Frame = +3
Query: 42 MEGKEEDVRVGANKFPERQPIGTSAQTDKDYKXXXXXXXXXXGELSSWSFYRAGIAEFIA 221
MEGKEEDVRVGANKFPERQPIGTSAQTDKDYK GELSSWSFYRAGIAEFIA
Sbjct: 1 MEGKEEDVRVGANKFPERQPIGTSAQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIA 60
Query: 222 TFLFLYITVLTVMGVKRAPNMCASXGIQGIAWAFGGMI 335
TFLFLYITVLTVMGVKRAPNMCAS GIQGIAWAFGGMI
Sbjct: 61 TFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMI 98
Score = 22.7 bits (47), Expect(2) = 4e-43
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = +2
Query: 356 TAGIFGGDINPXGAIWVF 409
TAGI GG INP +F
Sbjct: 105 TAGISGGHINPAVTFGLF 122
>ref|NP_171668.1| plasma membrane intrinsic protein 1c, putative; protein id:
At1g01620.1, supported by cDNA: gi_13194765, supported
by cDNA: gi_17065067 [Arabidopsis
thaliana]|gi|1175012|sp|Q08733|WC1C_ARATH Plasma
membrane intrinsic protein 1C (Transmembrane protein B)
(TMP-B)|gi|25295700|pir||A86147 hypothetical protein
F22L4.16 - Arabidopsis
thaliana|gi|396218|emb|CAA49155.1| transmembrane protein
TMP-B [Arabidopsis
thaliana]|gi|8920598|gb|AAF81320.1|AC061957_16 Identical
to a plasma membrane intrinsic protein 1C (transmembrane
protein B) from Arabidopsis thaliana gi|1175012 and
contains a major intrinsic protein PF|00230 domain.
ESTs gb|AI993641, gb|AA597672, gb|H36675, gb|N65332,
gb|N96473, gb|T43232, gb|H37074, gb|H36992, gb|N65343,
gb|T44267, gb|T45734, gb|N97036, gb|H36897, gb|Z17730,
gb|T22715, gb|T13917, gb|T14921 come from this
gene|gi|13194766|gb|AAK15545.1|AF348574_1 putative
plasma membrane intrinsic protein 1c [Arabidopsis
thaliana]
Length = 286
Score = 173 bits (439), Expect(2) = 4e-43
Identities = 87/98 (88%), Positives = 87/98 (88%)
Frame = +3
Query: 42 MEGKEEDVRVGANKFPERQPIGTSAQTDKDYKXXXXXXXXXXGELSSWSFYRAGIAEFIA 221
MEGKEEDVRVGANKFPERQPIGTSAQTDKDYK GELSSWSFYRAGIAEFIA
Sbjct: 1 MEGKEEDVRVGANKFPERQPIGTSAQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIA 60
Query: 222 TFLFLYITVLTVMGVKRAPNMCASXGIQGIAWAFGGMI 335
TFLFLYITVLTVMGVKRAPNMCAS GIQGIAWAFGGMI
Sbjct: 61 TFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMI 98
Score = 22.7 bits (47), Expect(2) = 4e-43
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = +2
Query: 356 TAGIFGGDINPXGAIWVF 409
TAGI GG INP +F
Sbjct: 105 TAGISGGHINPAVTFGLF 122
>pir||T01528 probable plasma membrane intrinsic protein 1c - Arabidopsis
thaliana|gi|2252825|gb|AAB62824.1| Similar to
transmembrane protein; coded for by A. thaliana cDNA
H37637; coded for by A. thaliana cDNA T41850; coded for
by A. thaliana cDNA T13717; coded for by A. thaliana
cDNA T04371; coded for by A. thaliana cDNA T43789; coded
for by A. thaliana cDNA N37205; coded for by A. thaliana
cDNA R84071; coded for by A. thaliana cDNA H36862; coded
for by A. thaliana cDNA T43049 [Arabidopsis
thaliana]|gi|6049867|gb|AAF02782.1|AF195115_2 Similar to
transmembrane protein; coded for by A. thaliana cDNA
H36862; coded for by A. thaliana cDNA H37637; coded for
by A. thaliana cDNA T04371; coded for by A. thaliana
cDNA T41850; coded for by A. thaliana cDNA R84071; coded
for by A. thaliana cDNA T13717; coded for by A. thaliana
cDNA T43049; coded for by A. thaliana cDNA T43789; coded
for by A. thaliana cDNA N37205 [Arabidopsis
thaliana]|gi|7267130|emb|CAB80801.1| probable plasma
membrane intrinsic protein 1c [Arabidopsis thaliana]
Length = 295
Score = 169 bits (427), Expect(2) = 9e-42
Identities = 87/99 (87%), Positives = 87/99 (87%), Gaps = 1/99 (1%)
Frame = +3
Query: 42 MEGKEEDVRVGANKFPERQPIGTSAQ-TDKDYKXXXXXXXXXXGELSSWSFYRAGIAEFI 218
MEGKEEDVRVGANKFPERQPIGTSAQ TDKDYK GELSSWSFYRAGIAEFI
Sbjct: 1 MEGKEEDVRVGANKFPERQPIGTSAQSTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFI 60
Query: 219 ATFLFLYITVLTVMGVKRAPNMCASXGIQGIAWAFGGMI 335
ATFLFLYITVLTVMGVKRAPNMCAS GIQGIAWAFGGMI
Sbjct: 61 ATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMI 99
Score = 22.7 bits (47), Expect(2) = 9e-42
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = +2
Query: 356 TAGIFGGDINPXGAIWVF 409
TAGI GG INP +F
Sbjct: 106 TAGISGGHINPAVTFGLF 123
>ref|NP_567178.1| probable plasma membrane intrinsic protein 1c; protein id:
At4g00430.1, supported by cDNA: gi_20466717, supported
by cDNA: gi_2373400, supported by cDNA: gi_535779
[Arabidopsis thaliana]|gi|535780|dbj|BAA05654.1|
transmembrane protein [Arabidopsis
thaliana]|gi|20466718|gb|AAM20676.1| probable plasma
membrane intrinsic protein 1c [Arabidopsis
thaliana]|gi|21539581|gb|AAM53343.1| probable plasma
membrane intrinsic protein 1c [Arabidopsis
thaliana]|gi|23198244|gb|AAN15649.1| probable plasma
membrane intrinsic protein 1c [Arabidopsis thaliana]
Length = 287
Score = 169 bits (427), Expect(2) = 9e-42
Identities = 87/99 (87%), Positives = 87/99 (87%), Gaps = 1/99 (1%)
Frame = +3
Query: 42 MEGKEEDVRVGANKFPERQPIGTSAQ-TDKDYKXXXXXXXXXXGELSSWSFYRAGIAEFI 218
MEGKEEDVRVGANKFPERQPIGTSAQ TDKDYK GELSSWSFYRAGIAEFI
Sbjct: 1 MEGKEEDVRVGANKFPERQPIGTSAQSTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFI 60
Query: 219 ATFLFLYITVLTVMGVKRAPNMCASXGIQGIAWAFGGMI 335
ATFLFLYITVLTVMGVKRAPNMCAS GIQGIAWAFGGMI
Sbjct: 61 ATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMI 99
Score = 22.7 bits (47), Expect(2) = 9e-42
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = +2
Query: 356 TAGIFGGDINPXGAIWVF 409
TAGI GG INP +F
Sbjct: 106 TAGISGGHINPAVTFGLF 123
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 114
effective length of database: 276,537,297
effective search space used: 15209551335
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)