BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= T13789.x
(200 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL32688.1| plasma membrane intrinsic protein 1C (transm... 94 4e-19
emb|CAA53476.1| plasma membrane intrinsic protein 1c [Arabi... 94 4e-19
ref|NP_171668.1| plasma membrane intrinsic protein 1c, puta... 94 4e-19
emb|CAA53475.1| plasma membrane intrinsic protein 1a [Arabi... 91 4e-18
ref|NP_191702.1| plasma membrane intrinsic protein 1a; prot... 91 4e-18
>gb|AAL32688.1| plasma membrane intrinsic protein 1C (transmembrane protein B)
[Arabidopsis thaliana]|gi|25083740|gb|AAN72112.1| plasma
membrane intrinsic protein 1C (transmembrane protein B)
[Arabidopsis thaliana]
Length = 286
Score = 94.4 bits (233), Expect = 4e-19
Identities = 50/64 (78%), Positives = 51/64 (79%), Gaps = 10/64 (15%)
Frame = +3
Query: 39 MEGKEEDVRVGANKXPERQPIGTSAXTDKDYKEP----------LSTXSFYRAGIAEFIA 188
MEGKEEDVRVGANK PERQPIGTSA TDKDYKEP LS+ SFYRAGIAEFIA
Sbjct: 1 MEGKEEDVRVGANKFPERQPIGTSAQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIA 60
Query: 189 TFLF 200
TFLF
Sbjct: 61 TFLF 64
>emb|CAA53476.1| plasma membrane intrinsic protein 1c [Arabidopsis thaliana]
Length = 286
Score = 94.4 bits (233), Expect = 4e-19
Identities = 50/64 (78%), Positives = 51/64 (79%), Gaps = 10/64 (15%)
Frame = +3
Query: 39 MEGKEEDVRVGANKXPERQPIGTSAXTDKDYKEP----------LSTXSFYRAGIAEFIA 188
MEGKEEDVRVGANK PERQPIGTSA TDKDYKEP LS+ SFYRAGIAEFIA
Sbjct: 1 MEGKEEDVRVGANKFPERQPIGTSAQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIA 60
Query: 189 TFLF 200
TFLF
Sbjct: 61 TFLF 64
>ref|NP_171668.1| plasma membrane intrinsic protein 1c, putative; protein id:
At1g01620.1, supported by cDNA: gi_13194765, supported
by cDNA: gi_17065067 [Arabidopsis
thaliana]|gi|1175012|sp|Q08733|WC1C_ARATH Plasma
membrane intrinsic protein 1C (Transmembrane protein B)
(TMP-B)|gi|25295700|pir||A86147 hypothetical protein
F22L4.16 - Arabidopsis
thaliana|gi|396218|emb|CAA49155.1| transmembrane protein
TMP-B [Arabidopsis
thaliana]|gi|8920598|gb|AAF81320.1|AC061957_16 Identical
to a plasma membrane intrinsic protein 1C (transmembrane
protein B) from Arabidopsis thaliana gi|1175012 and
contains a major intrinsic protein PF|00230 domain.
ESTs gb|AI993641, gb|AA597672, gb|H36675, gb|N65332,
gb|N96473, gb|T43232, gb|H37074, gb|H36992, gb|N65343,
gb|T44267, gb|T45734, gb|N97036, gb|H36897, gb|Z17730,
gb|T22715, gb|T13917, gb|T14921 come from this
gene|gi|13194766|gb|AAK15545.1|AF348574_1 putative
plasma membrane intrinsic protein 1c [Arabidopsis
thaliana]
Length = 286
Score = 94.4 bits (233), Expect = 4e-19
Identities = 50/64 (78%), Positives = 51/64 (79%), Gaps = 10/64 (15%)
Frame = +3
Query: 39 MEGKEEDVRVGANKXPERQPIGTSAXTDKDYKEP----------LSTXSFYRAGIAEFIA 188
MEGKEEDVRVGANK PERQPIGTSA TDKDYKEP LS+ SFYRAGIAEFIA
Sbjct: 1 MEGKEEDVRVGANKFPERQPIGTSAQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIA 60
Query: 189 TFLF 200
TFLF
Sbjct: 61 TFLF 64
>emb|CAA53475.1| plasma membrane intrinsic protein 1a [Arabidopsis thaliana]
Length = 286
Score = 90.9 bits (224), Expect = 4e-18
Identities = 48/64 (75%), Positives = 51/64 (79%), Gaps = 10/64 (15%)
Frame = +3
Query: 39 MEGKEEDVRVGANKXPERQPIGTSAXTDKDYKEP----------LSTXSFYRAGIAEFIA 188
MEGKEEDVRVGANK PERQPIGTSA +DKDYKEP LS+ SF+RAGIAEFIA
Sbjct: 1 MEGKEEDVRVGANKFPERQPIGTSAQSDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIA 60
Query: 189 TFLF 200
TFLF
Sbjct: 61 TFLF 64
>ref|NP_191702.1| plasma membrane intrinsic protein 1a; protein id: At3g61430.1,
supported by cDNA: 6690., supported by cDNA:
gi_16648674, supported by cDNA: gi_20453350 [Arabidopsis
thaliana]|gi|21431895|sp|P43285|WC1A_ARATH Plasma
membrane intrinsic protein 1A (Aquaporin 1) (Plasma
membrane aquaporin 1)|gi|11276917|pir||T47935 plasma
membrane intrinsic protein 1a - Arabidopsis
thaliana|gi|6850834|emb|CAB71073.1| plasma membrane
intrinsic protein 1a [Arabidopsis
thaliana]|gi|8347098|emb|CAB93959.1| aquaporin [Vicia
faba]|gi|8575712|gb|AAF78062.1| plasma membrane
aquaporin [Vicia faba]|gi|16648675|gb|AAL25530.1|
AT3g61430/F2A19_30 [Arabidopsis
thaliana]|gi|20453351|gb|AAM19914.1| AT3g61430/F2A19_30
[Arabidopsis thaliana]
Length = 286
Score = 90.9 bits (224), Expect = 4e-18
Identities = 48/64 (75%), Positives = 51/64 (79%), Gaps = 10/64 (15%)
Frame = +3
Query: 39 MEGKEEDVRVGANKXPERQPIGTSAXTDKDYKEP----------LSTXSFYRAGIAEFIA 188
MEGKEEDVRVGANK PERQPIGTSA +DKDYKEP LS+ SF+RAGIAEFIA
Sbjct: 1 MEGKEEDVRVGANKFPERQPIGTSAQSDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIA 60
Query: 189 TFLF 200
TFLF
Sbjct: 61 TFLF 64
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 42
effective length of database: 372,948,609
effective search space used: 8950766616
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)