BLAST Search Results

BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= N65332.x
         (516 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL32688.1|  plasma membrane intrinsic protein 1C (transm...   162   5e-41
ref|NP_171668.1|  plasma membrane intrinsic protein 1c, puta...   162   5e-41
emb|CAA53476.1|  plasma membrane intrinsic protein 1c [Arabi...   160   1e-40
pir||T01528  probable plasma membrane intrinsic protein 1c -...   160   6e-40
dbj|BAA22097.1|  transmembrane protein [Arabidopsis thaliana]     160   6e-40

>gb|AAL32688.1| plasma membrane intrinsic protein 1C (transmembrane protein B)
           [Arabidopsis thaliana]|gi|25083740|gb|AAN72112.1| plasma
           membrane intrinsic protein 1C (transmembrane protein B)
           [Arabidopsis thaliana]
          Length = 286

 Score =  162 bits (409), Expect(2) = 5e-41
 Identities = 83/94 (88%), Positives = 85/94 (90%)
 Frame = -3

Query: 397 IATFLFPIHNRY*Q*WGVKRAPNMCTSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV 218
           IATFLF ++       GVKRAPNMC SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV
Sbjct: 59  IATFLF-LYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV 117

Query: 217 TFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVK 116
           TFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVK
Sbjct: 118 TFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVK 151




 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 33/48 (68%), Positives = 35/48 (72%)
 Frame = +3

Query: 3   VAHGYTKGSGLGAEIIGTFVLVYTVFSAESLVRIWLEALTTPAPQMAP 146
           VAHGYTKGSGLGAEIIGTFVLVYTVFSA    R    A  +  P +AP
Sbjct: 168 VAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKR---SARDSHVPILAP 212




 Score = 27.3 bits (59), Expect(2) = 5e-41
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 119 QSFQPNPYQTLG 84
           + FQPNPYQTLG
Sbjct: 151 KGFQPNPYQTLG 162



>ref|NP_171668.1| plasma membrane intrinsic protein 1c, putative; protein id:
           At1g01620.1, supported by cDNA: gi_13194765, supported
           by cDNA: gi_17065067 [Arabidopsis
           thaliana]|gi|1175012|sp|Q08733|WC1C_ARATH Plasma
           membrane intrinsic protein 1C (Transmembrane protein B)
           (TMP-B)|gi|25295700|pir||A86147 hypothetical protein
           F22L4.16 - Arabidopsis
           thaliana|gi|396218|emb|CAA49155.1| transmembrane protein
           TMP-B [Arabidopsis
           thaliana]|gi|8920598|gb|AAF81320.1|AC061957_16 Identical
           to a plasma membrane intrinsic protein 1C (transmembrane
           protein B) from Arabidopsis thaliana gi|1175012 and
           contains a major intrinsic protein PF|00230 domain.
           ESTs gb|AI993641, gb|AA597672, gb|H36675, gb|N65332,
           gb|N96473, gb|T43232, gb|H37074, gb|H36992, gb|N65343,
           gb|T44267, gb|T45734, gb|N97036, gb|H36897, gb|Z17730,
           gb|T22715, gb|T13917, gb|T14921 come from this
           gene|gi|13194766|gb|AAK15545.1|AF348574_1 putative
           plasma membrane intrinsic protein 1c [Arabidopsis
           thaliana]
          Length = 286

 Score =  162 bits (409), Expect(2) = 5e-41
 Identities = 83/94 (88%), Positives = 85/94 (90%)
 Frame = -3

Query: 397 IATFLFPIHNRY*Q*WGVKRAPNMCTSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV 218
           IATFLF ++       GVKRAPNMC SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV
Sbjct: 59  IATFLF-LYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV 117

Query: 217 TFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVK 116
           TFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVK
Sbjct: 118 TFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVK 151




 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 33/48 (68%), Positives = 35/48 (72%)
 Frame = +3

Query: 3   VAHGYTKGSGLGAEIIGTFVLVYTVFSAESLVRIWLEALTTPAPQMAP 146
           VAHGYTKGSGLGAEIIGTFVLVYTVFSA    R    A  +  P +AP
Sbjct: 168 VAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKR---SARDSHVPILAP 212




 Score = 27.3 bits (59), Expect(2) = 5e-41
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 119 QSFQPNPYQTLG 84
           + FQPNPYQTLG
Sbjct: 151 KGFQPNPYQTLG 162



>emb|CAA53476.1| plasma membrane intrinsic protein 1c [Arabidopsis thaliana]
          Length = 286

 Score =  160 bits (405), Expect(2) = 1e-40
 Identities = 82/94 (87%), Positives = 84/94 (89%)
 Frame = -3

Query: 397 IATFLFPIHNRY*Q*WGVKRAPNMCTSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV 218
           IATFLF ++       GVKRAPNMC SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV
Sbjct: 59  IATFLF-LYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV 117

Query: 217 TFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVK 116
           TFGLFLARKLSLTRAVFYIVMQC GAICGAGVVK
Sbjct: 118 TFGLFLARKLSLTRAVFYIVMQCFGAICGAGVVK 151




 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 32/48 (66%), Positives = 35/48 (72%)
 Frame = +3

Query: 3   VAHGYTKGSGLGAEIIGTFVLVYTVFSAESLVRIWLEALTTPAPQMAP 146
           VAHGYTKGSGLGAEIIGTFVL+YTVFSA    R    A  +  P +AP
Sbjct: 168 VAHGYTKGSGLGAEIIGTFVLIYTVFSATDAKR---SARDSHVPILAP 212




 Score = 27.3 bits (59), Expect(2) = 1e-40
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 119 QSFQPNPYQTLG 84
           + FQPNPYQTLG
Sbjct: 151 KGFQPNPYQTLG 162



>pir||T01528 probable plasma membrane intrinsic protein 1c - Arabidopsis
           thaliana|gi|2252825|gb|AAB62824.1| Similar to
           transmembrane protein; coded for by A. thaliana cDNA
           H37637; coded for by A. thaliana cDNA T41850; coded for
           by A. thaliana cDNA T13717; coded for by A. thaliana
           cDNA T04371; coded for by A. thaliana cDNA T43789; coded
           for by A. thaliana cDNA N37205; coded for by A. thaliana
           cDNA R84071; coded for by A. thaliana cDNA H36862; coded
           for by A. thaliana cDNA T43049 [Arabidopsis
           thaliana]|gi|6049867|gb|AAF02782.1|AF195115_2 Similar to
           transmembrane protein; coded for by A. thaliana cDNA
           H36862; coded for by A. thaliana cDNA H37637; coded for
           by A. thaliana cDNA T04371; coded for by A. thaliana
           cDNA T41850; coded for by A. thaliana cDNA R84071; coded
           for by A. thaliana cDNA T13717; coded for by A. thaliana
           cDNA T43049; coded for by A. thaliana cDNA T43789; coded
           for by A. thaliana cDNA N37205 [Arabidopsis
           thaliana]|gi|7267130|emb|CAB80801.1| probable plasma
           membrane intrinsic protein 1c [Arabidopsis thaliana]
          Length = 295

 Score =  160 bits (405), Expect(2) = 6e-40
 Identities = 81/94 (86%), Positives = 85/94 (90%)
 Frame = -3

Query: 397 IATFLFPIHNRY*Q*WGVKRAPNMCTSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV 218
           IATFLF ++       GVKRAPNMC SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV
Sbjct: 60  IATFLF-LYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV 118

Query: 217 TFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVK 116
           TFGLFLARKLSLTRAVFY++MQCLGAICGAGVVK
Sbjct: 119 TFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVK 152




 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 35/56 (62%), Positives = 38/56 (67%), Gaps = 8/56 (14%)
 Frame = +3

Query: 3   VAHGYTKGSGLGAEIIGTFVLVYTVFSA--------ESLVRIWLEALTTPAPQMAP 146
           VAHGYTKGSGLGAEIIGTFVLVYTVFSA        +S V +W   L    P +AP
Sbjct: 169 VAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPVWTPLL---VPILAP 221




 Score = 25.0 bits (53), Expect(2) = 6e-40
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 119 QSFQPNPYQTLG 84
           + FQP PYQTLG
Sbjct: 152 KGFQPTPYQTLG 163



>dbj|BAA22097.1| transmembrane protein [Arabidopsis thaliana]
          Length = 287

 Score =  160 bits (405), Expect(2) = 6e-40
 Identities = 81/94 (86%), Positives = 85/94 (90%)
 Frame = -3

Query: 397 IATFLFPIHNRY*Q*WGVKRAPNMCTSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV 218
           IATFLF ++       GVKRAPNMC SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV
Sbjct: 60  IATFLF-LYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAV 118

Query: 217 TFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVK 116
           TFGLFLARKLSLTRAVFY++MQCLGAICGAGVVK
Sbjct: 119 TFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVK 152




 Score = 57.4 bits (137), Expect = 9e-08
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 6   AHGYTKGSGLGAEIIGTFVLVYTVFSA 86
           AHGYTKGSGLGAEIIGTFVLVYTVFSA
Sbjct: 170 AHGYTKGSGLGAEIIGTFVLVYTVFSA 196




 Score = 25.0 bits (53), Expect(2) = 6e-40
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 119 QSFQPNPYQTLG 84
           + FQP PYQTLG
Sbjct: 152 KGFQPTPYQTLG 163



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 114
effective length of database: 276,537,297
effective search space used: 15762625929
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results