BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.3.C1
(2538 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171614.1| DNA-binding protein, putative; protein id:... 1044 0.0
emb|CAA07004.1| late elongated hypocotyl [Arabidopsis thali... 1041 0.0
gb|AAF26474.1|AC007323_15 T25K16.6 [Arabidopsis thaliana] 1028 0.0
emb|CAD12767.2| LHY protein [Phaseolus vulgaris] 391 e-107
ref|NP_566088.2| MYB-related transcription factor (CCA1); p... 283 1e-74
>ref|NP_171614.1| DNA-binding protein, putative; protein id: At1g01060.1 [Arabidopsis
thaliana]
Length = 645
Score = 1044 bits (2699), Expect = 0.0
Identities = 532/645 (82%), Positives = 533/645 (82%)
Frame = +1
Query: 274 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLKALRLYGRAWQRIEEHIGTKTAVQ 453
MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFL+ALRLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQ 60
Query: 454 IRSHAQKFFTKLEKEAEVKGIPVCQALDIEIXXXXXXXXXXXXXXXXXGNNGTSSSQVSS 633
IRSHAQKFFTKLEKEAEVKGIPVCQALDIEI GNNGTSSSQVSS
Sbjct: 61 IRSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSS 120
Query: 634 AKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKQVSG 813
AKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKQVSG
Sbjct: 121 AKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKQVSG 180
Query: 814 DIETSKTSTVDNAVQDVPXXXXXXXXXXXTTVHSMQNYPWHFHADIVNGNIAKCPQNHPS 993
DIETSKTSTVDNAVQDVP TTVHSMQNYPWHFHADIVNGNIAKCPQNHPS
Sbjct: 181 DIETSKTSTVDNAVQDVPKKNKDKDGNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPS 240
Query: 994 GMVSQDFMFHPMREETHGHANLQXXXXXXXXXXXHQAFPACHSQDDYRSFLQISSTFSNL 1173
GMVSQDFMFHPMREETHGHANLQ HQAFPACHSQDDYRSFLQISSTFSNL
Sbjct: 241 GMVSQDFMFHPMREETHGHANLQATTASATTTASHQAFPACHSQDDYRSFLQISSTFSNL 300
Query: 1174 IMSTLLQNPXXXXXXXXXXSVWPYASVGNSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1353
IMSTLLQNP SVWPYASVGNSGD
Sbjct: 301 IMSTLLQNPAAHAAATFAASVWPYASVGNSGDSSTPMSSSPPSITAIAAATVAAATAWWA 360
Query: 1354 XHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQNLXXXXXXXX 1533
HGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQNL
Sbjct: 361 SHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQNLASKSPASS 420
Query: 1534 XXXXXETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAE 1713
ETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAE
Sbjct: 421 SDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAE 480
Query: 1714 TDALXXXXXXXXXXXXXXXNQPDVIELNNRKIKMRDXXXXXXATTDSWKEVSEEGRIAFQ 1893
TDAL NQPDVIELNNRKIKMRD ATTDSWKEVSEEGRIAFQ
Sbjct: 481 TDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNATTDSWKEVSEEGRIAFQ 540
Query: 1894 ALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSL 2073
ALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSL
Sbjct: 541 ALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSL 600
Query: 2074 KTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST 2208
KTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST
Sbjct: 601 KTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST 645
>emb|CAA07004.1| late elongated hypocotyl [Arabidopsis thaliana]
Length = 645
Score = 1041 bits (2693), Expect = 0.0
Identities = 531/645 (82%), Positives = 532/645 (82%)
Frame = +1
Query: 274 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLKALRLYGRAWQRIEEHIGTKTAVQ 453
MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFL+ALRLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQ 60
Query: 454 IRSHAQKFFTKLEKEAEVKGIPVCQALDIEIXXXXXXXXXXXXXXXXXGNNGTSSSQVSS 633
IRSHAQKFFTKLEKEAEVKGIPVCQALDIEI GNNGTSSSQVSS
Sbjct: 61 IRSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSS 120
Query: 634 AKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKQVSG 813
AKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKQVSG
Sbjct: 121 AKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKQVSG 180
Query: 814 DIETSKTSTVDNAVQDVPXXXXXXXXXXXTTVHSMQNYPWHFHADIVNGNIAKCPQNHPS 993
DIETSKTSTVDNAVQDVP TTVHSMQNYPWHFHADIVNGNIAKCPQNHPS
Sbjct: 181 DIETSKTSTVDNAVQDVPKKNKDKDGNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPS 240
Query: 994 GMVSQDFMFHPMREETHGHANLQXXXXXXXXXXXHQAFPACHSQDDYRSFLQISSTFSNL 1173
GMVSQDFMFHPMREETHGHANLQ HQAFPACHSQDDYRSFLQISSTFSNL
Sbjct: 241 GMVSQDFMFHPMREETHGHANLQATTASATTTASHQAFPACHSQDDYRSFLQISSTFSNL 300
Query: 1174 IMSTLLQNPXXXXXXXXXXSVWPYASVGNSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1353
IMSTLLQNP SVWPYASVGNSGD
Sbjct: 301 IMSTLLQNPAAHAAATFAASVWPYASVGNSGDSSTPMSSSPPSITAIAAATVAAATAWWA 360
Query: 1354 XHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQNLXXXXXXXX 1533
HGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQ L
Sbjct: 361 SHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQTLASKSPASS 420
Query: 1534 XXXXXETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAE 1713
ETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAE
Sbjct: 421 SDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAE 480
Query: 1714 TDALXXXXXXXXXXXXXXXNQPDVIELNNRKIKMRDXXXXXXATTDSWKEVSEEGRIAFQ 1893
TDAL NQPDVIELNNRKIKMRD ATTDSWKEVSEEGRIAFQ
Sbjct: 481 TDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNATTDSWKEVSEEGRIAFQ 540
Query: 1894 ALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSL 2073
ALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSL
Sbjct: 541 ALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSL 600
Query: 2074 KTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST 2208
KTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST
Sbjct: 601 KTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST 645
>gb|AAF26474.1|AC007323_15 T25K16.6 [Arabidopsis thaliana]
Length = 656
Score = 1028 bits (2659), Expect = 0.0
Identities = 531/657 (80%), Positives = 532/657 (80%), Gaps = 12/657 (1%)
Frame = +1
Query: 274 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLKALRLYGRAWQRIEEHIGTKTAVQ 453
MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFL+ALRLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQ 60
Query: 454 IRSHAQKFFTK------------LEKEAEVKGIPVCQALDIEIXXXXXXXXXXXXXXXXX 597
IRSHAQKFFTK LEKEAEVKGIPVCQALDIEI
Sbjct: 61 IRSHAQKFFTKFGKAHSFWFTFQLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKP 120
Query: 598 GNNGTSSSQVSSAKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTV 777
GNNGTSSSQVSSAKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTV
Sbjct: 121 GNNGTSSSQVSSAKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTV 180
Query: 778 NKYPLPTKQVSGDIETSKTSTVDNAVQDVPXXXXXXXXXXXTTVHSMQNYPWHFHADIVN 957
NKYPLPTK VSGDIETSKTSTVDNAVQDVP TTVHSMQNYPWHFHADIVN
Sbjct: 181 NKYPLPTK-VSGDIETSKTSTVDNAVQDVPKKNKDKDGNDGTTVHSMQNYPWHFHADIVN 239
Query: 958 GNIAKCPQNHPSGMVSQDFMFHPMREETHGHANLQXXXXXXXXXXXHQAFPACHSQDDYR 1137
GNIAKCPQNHPSGMVSQDFMFHPMREETHGHANLQ HQAFPACHSQDDYR
Sbjct: 240 GNIAKCPQNHPSGMVSQDFMFHPMREETHGHANLQATTASATTTASHQAFPACHSQDDYR 299
Query: 1138 SFLQISSTFSNLIMSTLLQNPXXXXXXXXXXSVWPYASVGNSGDXXXXXXXXXXXXXXXX 1317
SFLQISSTFSNLIMSTLLQNP SVWPYASVGNSGD
Sbjct: 300 SFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVGNSGDSSTPMSSSPPSITAIA 359
Query: 1318 XXXXXXXXXXXXXHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQ 1497
HGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQ
Sbjct: 360 AATVAAATAWWASHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQ 419
Query: 1498 DQNLXXXXXXXXXXXXXETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSS 1677
DQNL ETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSS
Sbjct: 420 DQNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSS 479
Query: 1678 CGSNTPSGSDAETDALXXXXXXXXXXXXXXXNQPDVIELNNRKIKMRDXXXXXXATTDSW 1857
CGSNTPSGSDAETDAL NQPDVIELNNRKIKMRD ATTDSW
Sbjct: 480 CGSNTPSGSDAETDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNATTDSW 539
Query: 1858 KEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEG 2037
KEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEG
Sbjct: 540 KEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEG 599
Query: 2038 VVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST 2208
VVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST
Sbjct: 600 VVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST 656
>emb|CAD12767.2| LHY protein [Phaseolus vulgaris]
Length = 723
Score = 391 bits (1004), Expect = e-107
Identities = 283/751 (37%), Positives = 367/751 (48%), Gaps = 106/751 (14%)
Frame = +1
Query: 274 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLKALRLYGRAWQRIEEHIGTKTAVQ 453
MD +SGEE++ K RKPYTITKQRERWTE+EH RFL+AL+L+GRAWQRIEEHIGTKTAVQ
Sbjct: 1 MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQ 60
Query: 454 IRSHAQKFFTKLEKEAEVKGIPVCQALDIEIXXXXXXXXXXXXXXXXXGNNGTSSSQVSS 633
IRSHAQKFFTKLEKEA VKG+P+ QALDI+I GT++ S
Sbjct: 61 IRSHAQKFFTKLEKEALVKGVPIGQALDIDIPPPRPKRKPSNPYPRKT-TIGTATLH-SG 118
Query: 634 AKDAKLVSSASSSQLNQAFLDLEKMPFSEK------TSTGKENQDENCS----------- 762
AKD LV S+ ++Q LDLEK P EK +T KEN+DENCS
Sbjct: 119 AKDGNLVESSHNNQA----LDLEKEPLPEKYDLDEGLTTVKENKDENCSKVFKVIQEVPC 174
Query: 763 -GVSTVNKYPLPT----------KQVSGDIE----------------------------- 822
+S+ N+ + K+++ ++
Sbjct: 175 SSISSANRSSISMSVPLGNSCVLKEITSSVKEVITRDENTESFLTVELGNRNLEINDGKQ 234
Query: 823 ---TSKTSTVDN--AVQD-VPXXXXXXXXXXXTTVHSMQ---NYPWHFHADIVNGNIAKC 975
TSK ST++N A+Q + T+ MQ NYP H +V+G +
Sbjct: 235 ANGTSKNSTLENSDALQTKLVQNEKTDGLDSALTIDGMQGNQNYPRHVTVHVVDGKLGTS 294
Query: 976 PQNHPSGMVSQDFMFHPMREETHGHANL---------QXXXXXXXXXXXHQAFPAC---- 1116
QN M+ +D MF P+ + +G NL HQ+F
Sbjct: 295 TQNPSQDMLFRDSMFQPIGGD-NGQPNLFTNSAPTNTSESQNNTARSSVHQSFLPYPPFT 353
Query: 1117 -HSQDDYRSFLQISSTFSNLIMSTLLQNPXXXXXXXXXXSVWPYASVGNSGDX------- 1272
H+QDDY+SFL +SSTFSNL++STLLQNP + WPYA+ S D
Sbjct: 354 QHNQDDYQSFLHMSSTFSNLVVSTLLQNPAAHVAASFAATFWPYANPETSADSPRCSQGG 413
Query: 1273 -XXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLPVCAP--APITCVPFSTVAVPTPAMTE 1443
HGLLP+C P A C P S AVP+
Sbjct: 414 FTSRQIGSPPSVAAIAAATVAAATAWWAAHGLLPLCLPLHAAFACPPASVTAVPS----- 468
Query: 1444 MDTVENTQPFEKQNTALQDQNLXXXXXXXXXXXXXETGVTKLNADSKTNDDKIEEVVVTA 1623
M+ Q + + A Q Q+ ETG KLN K D E T
Sbjct: 469 MNPPVQDQKHPEYSEAPQAQH-SDSKSLAVISSDSETGNAKLNTSPKATDHVTNE---TI 524
Query: 1624 AVH-DSNTAQKKNLVDRSSCGSNTPSGSDAETDALXXXXXXXXXXXXXXXNQPDVIELNN 1800
+ H DS+ + + VDRSSCGSNT S SD ETDAL +P+ + NN
Sbjct: 525 SEHLDSDKTKGRKQVDRSSCGSNTASSSDVETDALGKDEKGK--------EEPETPDANN 576
Query: 1801 RKIKMRDXXXXXXATTDSWKEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQ--SD 1974
I+ + TDSWKEVS EGR+AFQALF+RE LPQSFSPP +N ++ +D
Sbjct: 577 LAIEFSNRRRSIYNLTDSWKEVSSEGRLAFQALFSREVLPQSFSPPHALKNKDQMDITND 636
Query: 1975 TSMPLAPNFKSQDS--CAA-----------DQEGVVMIGVGTCKSLKTRQTGFKPYKRCS 2115
+A + DS C++ + G++ IG+G K LKTR+TGFKPYKRCS
Sbjct: 637 YKQNIADRNEDLDSKKCSSNALHKIPSFVENNVGLLTIGLGQGK-LKTRRTGFKPYKRCS 695
Query: 2116 MEVKESQVGNINNQSDEKVCKRLRLEGEAST 2208
+E +E++VG +EK CKR+RLEG+ ST
Sbjct: 696 VEARENRVG---ANCEEKGCKRIRLEGDTST 723
>ref|NP_566088.2| MYB-related transcription factor (CCA1); protein id: At2g46830.1,
supported by cDNA: gi_1777442 [Arabidopsis
thaliana]|gi|7484928|pir||T02684 MYB-related
transcription factor (CCA1) [imported] - Arabidopsis
thaliana|gi|1777443|gb|AAB40525.1| CCA1 [Arabidopsis
thaliana]|gi|3510263|gb|AAC33507.1| MYB-related
transcription factor (CCA1); supported by cDNA:
gi:1777442 [Arabidopsis
thaliana]|gi|4090569|gb|AAC98813.1| CCA1 [Arabidopsis
thaliana]
Length = 608
Score = 283 bits (723), Expect = 1e-74
Identities = 226/677 (33%), Positives = 300/677 (43%), Gaps = 32/677 (4%)
Frame = +1
Query: 274 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLKALRLYGRAWQRIEEHIGTKTAVQ 453
M+TN+SGE+L+ K RKPYTITKQRERWTE+EH RF++ALRLYGRAWQ+IEEH+ TKTAVQ
Sbjct: 1 METNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQ 60
Query: 454 IRSHAQKFFTKLEKEAEVKGIPVCQALDIEIXXXXXXXXXXXXXXXXXGNNGTSSSQVSS 633
IRSHAQKFF+K+EKEAE KG+ + QALDI I G+ S+
Sbjct: 61 IRSHAQKFFSKVEKEAEAKGVAMGQALDIAIPPPRPKRKPNNPYPRKTGSGTILMSKTGV 120
Query: 634 AKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKQVSG 813
+ + S S A D ++ EKT Q++NCS T +
Sbjct: 121 NDGKESLGSEKVSHPEMANEDRQQSKPEEKTL-----QEDNCSDCFTHQYLSAASSMNKS 175
Query: 814 DIETSKTSTV------------DNAVQDVPXXXXXXXXXXXTTVHSMQNYPWHFHADIVN 957
IETS ST +N V+ Q YP H +
Sbjct: 176 CIETSNASTFREFLPSREEGSQNNRVRKESNSDLNAKSLENGNEQGPQTYPMHIPVLVPL 235
Query: 958 GNIAKCPQNHPSGMVSQDFMFHPMREETHGHANLQXXXXXXXXXXXHQAFPACHSQDDYR 1137
G+ +HP P ++H H DY+
Sbjct: 236 GSSITSSLSHP-----------PSEPDSHPHT----------------------VAGDYQ 262
Query: 1138 SFLQISSTFSNLIMSTLLQNPXXXXXXXXXXSVWPYASVGNSGDXXXXXXXXXXXXXXXX 1317
S F N IMSTLLQ P S WP S G S
Sbjct: 263 S-------FPNHIMSTLLQTPALYTAATFASSFWPPDSSGGS----PVPGNSPPNLAAMA 311
Query: 1318 XXXXXXXXXXXXXHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQ 1497
+GLLP+C AP++ F+ + P VE T+ Q+ ++Q
Sbjct: 312 AATVAAASAWWAANGLLPLC--APLSSGGFT--SHPPSTFGPSCDVEYTKASTLQHGSVQ 367
Query: 1498 DQNLXXXXXXXXXXXXXETGVTKLNADSKTNDDKIEEV-------VVTAAVHDSNTAQKK 1656
+ E + + DS+ ++K + V + S+ A +
Sbjct: 368 SRE----------QEHSEASKARSSLDSEDVENKSKPVCHEQPSATPESDAKGSDGAGDR 417
Query: 1657 NLVDRSSCGSNTPSGS-DAETDA---LXXXXXXXXXXXXXXXNQPDVIELNNRKIKMRDX 1824
VDRSSCGSNTPS S D E DA N+P E N R+ ++
Sbjct: 418 KQVDRSSCGSNTPSSSDDVEADASERQEDGTNGEVKETNEDTNKPQTSESNARRSRI--- 474
Query: 1825 XXXXXATTDSWKEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLA--PN 1998
TD WK VS+EGRIAFQALF+RE LPQSF+ + ++Q + P+A N
Sbjct: 475 ---SSNITDPWKSVSDEGRIAFQALFSREVLPQSFTYREEHREEEQQQQEQRYPMALDLN 531
Query: 1999 FKSQDSCAADQE-----GVVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNINN--Q 2157
F +Q + DQE G + IG+ K + +TGFKPYKRCSME KES++ N N
Sbjct: 532 FTAQLTPVDDQEEKRNTGFLGIGLDASKLMSRGRTGFKPYKRCSMEAKESRILNNNPIIH 591
Query: 2158 SDEKVCKRLRLEGEAST 2208
++K KR+RLE +AST
Sbjct: 592 VEQKDPKRMRLETQAST 608
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 132
effective length of database: 252,434,469
effective search space used: 179985776397
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)