BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV536135.r
(461 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171654.1| hypothetical protein; protein id: At1g0147... 169 3e-42
gb|AAD25354.1|AF115314_1 seed maturation protein PM22; late... 128 2e-29
sp|P46518|LE14_GOSHI Late embryogenesis abundant protein Le... 128 3e-29
sp|P46519|LE14_SOYBN Desiccation protectant protein Lea14 h... 127 7e-29
gb|AAL66195.1|AF386513_1 putative desiccation protectant pr... 118 3e-26
>ref|NP_171654.1| hypothetical protein; protein id: At1g01470.1, supported by cDNA:
gi_18650613 [Arabidopsis
thaliana]|gi|25347099|pir||D86145 putative desication
related protein LEA14 - Arabidopsis
thaliana|gi|1922244|emb|CAA71174.1| putative desication
related protein LEA14 [Arabidopsis
thaliana]|gi|2505882|emb|CAA73311.1| LEA protein
[Arabidopsis
thaliana]|gi|8920585|gb|AAF81307.1|AC061957_3 Contains
similarity to a late embryogenesis abundant protein
LEA14-A from Gossypium hirsutum gi|1170745. ESTs
gb|T88650, gb|AI994095, gb|Z37258, gb|R30106, gb|H76171
come from this gene. [Arabidopsis
thaliana]|gi|18650614|gb|AAL75906.1| At1g01470/F22L4_2
[Arabidopsis thaliana]
Length = 151
Score = 169 bits (429), Expect(2) = 3e-42
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = -1
Query: 359 REIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTIDLPV 180
REIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTIDLPV
Sbjct: 69 REIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTIDLPV 128
Query: 179 VGEFTIPISSKGEIKLPTFKDFF 111
VGEFTIPISSKGEIKLPTFKDFF
Sbjct: 129 VGEFTIPISSKGEIKLPTFKDFF 151
Score = 23.1 bits (48), Expect(2) = 3e-42
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 459 SFTFHSAGR 433
SFTFHSAGR
Sbjct: 61 SFTFHSAGR 69
>gb|AAD25354.1|AF115314_1 seed maturation protein PM22; late embryogenesis abundant protein;
LEA protein [Glycine max]
Length = 152
Score = 128 bits (322), Expect = 2e-29
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = -1
Query: 362 NREIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTIDLP 183
+REI GKIPDPGSLKAKD T +D+PV VPYSIL +LA+D+G DWDIDY+L +GL ID+P
Sbjct: 68 SREIASGKIPDPGSLKAKDTTMVDVPVKVPYSILMSLAKDIGADWDIDYQLDLGLVIDVP 127
Query: 182 VVGEFTIPISSKGEIKLPTFKDFF 111
V+G FTIP+S KGEIKLPT F
Sbjct: 128 VIGIFTIPLSQKGEIKLPTLSTMF 151
>sp|P46518|LE14_GOSHI Late embryogenesis abundant protein Lea14-A|gi|7484727|pir||T09875
late embryogenesis-abundant protein Lea14-A - upland
cotton|gi|167326|gb|AAA18542.1| Group 4 late
embryogenesis-abundant protein|gi|167328|gb|AAA18543.1|
Group 4 late embryogenesis-abundant protein
Length = 151
Score = 128 bits (321), Expect = 3e-29
Identities = 58/83 (69%), Positives = 67/83 (79%)
Frame = -1
Query: 359 REIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTIDLPV 180
R I G IPDPGSLKA D T LD+PV VPY+IL +L +D+G DWDIDYEL++GLTIDLP+
Sbjct: 69 RGIASGTIPDPGSLKASDTTMLDVPVKVPYNILVSLVKDIGADWDIDYELELGLTIDLPI 128
Query: 179 VGEFTIPISSKGEIKLPTFKDFF 111
VG FTIP+S KGEIKLPT D F
Sbjct: 129 VGNFTIPLSQKGEIKLPTLSDIF 151
>sp|P46519|LE14_SOYBN Desiccation protectant protein Lea14 homolog|gi|7488659|pir||T06356
desiccation protectant protein homolog -
soybean|gi|472850|gb|AAA61564.1| putative desiccation
protectant protein, homolog of Lea14, GenBank Accession
Number M88321
Length = 152
Score = 127 bits (318), Expect = 7e-29
Identities = 57/83 (68%), Positives = 67/83 (80%)
Frame = -1
Query: 359 REIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTIDLPV 180
+EI G IPDPGSLKA D T LD+PV VP+SIL +LA+D+G DWDIDY+L +GL IDLPV
Sbjct: 69 KEIASGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQLDLGLVIDLPV 128
Query: 179 VGEFTIPISSKGEIKLPTFKDFF 111
+G FTIP+S KGEIKLPT D F
Sbjct: 129 IGNFTIPLSQKGEIKLPTLSDMF 151
>gb|AAL66195.1|AF386513_1 putative desiccation protectant protein [Pyrus communis]
Length = 150
Score = 118 bits (295), Expect = 3e-26
Identities = 54/80 (67%), Positives = 64/80 (79%)
Frame = -1
Query: 365 VNREIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQIGLTIDL 186
VNREI G IPDPGSLKA D+T L++ + VP+SIL LA+D+G DWD DYEL IGLTIDL
Sbjct: 69 VNREIASGTIPDPGSLKASDITVLEVLLKVPHSILVTLAKDLGADWDFDYELDIGLTIDL 128
Query: 185 PVVGEFTIPISSKGEIKLPT 126
PV+G FT P++ KGE KLPT
Sbjct: 129 PVIGNFTTPLNKKGEFKLPT 148
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 112
effective length of database: 279,215,389
effective search space used: 11447830949
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)