BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.28.C1
(1481 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171650.1| hypothetical protein; protein id: At1g0143... 885 0.0
gb|AAO42299.1| unknown protein [Arabidopsis thaliana] 876 0.0
ref|NP_192017.1| hypothetical protein; protein id: At4g0108... 560 e-158
gb|AAO42025.1| unknown protein [Arabidopsis thaliana] 558 e-157
ref|NP_192847.1| putative protein; protein id: At4g11090.1 ... 392 e-107
>ref|NP_171650.1| hypothetical protein; protein id: At1g01430.1 [Arabidopsis
thaliana]|gi|25518737|pir||H86144 hypothetical protein
F6F3.23 [imported] - Arabidopsis
thaliana|gi|9665154|gb|AAF97338.1|AC023628_19 Unknown
protein [Arabidopsis thaliana]
Length = 442
Score = 885 bits (2288), Expect = 0.0
Identities = 424/442 (95%), Positives = 424/442 (95%)
Frame = +1
Query: 1 MDSLRLISKSIKIEGTPFGSSHQRNQIFLKSVAFFLLIGLAYRFLIXXXXXXXXXXXXXX 180
MDSLRLISKSIKIEGTPFGSSHQRNQIFLKSVAFFLLIGLAYRFLI
Sbjct: 1 MDSLRLISKSIKIEGTPFGSSHQRNQIFLKSVAFFLLIGLAYRFLITNSTVSPVPTVRSS 60
Query: 181 XXXLPPDPSGLTAITQTSASVDSPANITTIASQNDPSGPIYTNVSCRHIQDYQNCLKNGR 360
LPPDPSGLTAITQTSASVDSPANITTIASQNDPSGPIYTNVSCRHIQDYQNCLKNGR
Sbjct: 61 PESLPPDPSGLTAITQTSASVDSPANITTIASQNDPSGPIYTNVSCRHIQDYQNCLKNGR 120
Query: 361 PDVNYLRWRWQPRDCDLPRFNPEQFLDNMRNKWLAFIGDSISRNHVQSLLCILSQVEEVE 540
PDVNYLRWRWQPRDCDLPRFNPEQFLDNMRNKWLAFIGDSISRNHVQSLLCILSQVEEVE
Sbjct: 121 PDVNYLRWRWQPRDCDLPRFNPEQFLDNMRNKWLAFIGDSISRNHVQSLLCILSQVEEVE 180
Query: 541 DIFHDKEYKSRIWRFPSYNFTLSVIWSPFLVKAETFENGVPFSDIRVHLDKLDQKWTDQY 720
DIFHDKEYKSRIWRFPSYNFTLSVIWSPFLVKAETFENGVPFSDIRVHLDKLDQKWTDQY
Sbjct: 181 DIFHDKEYKSRIWRFPSYNFTLSVIWSPFLVKAETFENGVPFSDIRVHLDKLDQKWTDQY 240
Query: 721 INFDYVVISGGKWFLKTTIFHENNTVTGCHYCQGKNNMTELGYLYSYRKVLRLVLDFVAE 900
INFDYVVISGGKWFLKTTIFHENNTVTGCHYCQGKNNMTELGYLYSYRKVL LVLDFVAE
Sbjct: 241 INFDYVVISGGKWFLKTTIFHENNTVTGCHYCQGKNNMTELGYLYSYRKVLHLVLDFVAE 300
Query: 901 PNHKAQVLFRTTTPDHFENGEWDSGGFCNRTMPFTEGSEGEMKSEDVSMRDIELEEFYKT 1080
PNHKAQVLFRTTTPDHFENGEWDSGGFCNRTMPFTEGSEGEMKSEDVSMRDIELEEFYKT
Sbjct: 301 PNHKAQVLFRTTTPDHFENGEWDSGGFCNRTMPFTEGSEGEMKSEDVSMRDIELEEFYKT 360
Query: 1081 TTTQQEGSNSNIVLLDTTSMSLLRPDGHPGPYRYPNPFAGLKNKELNQVQNDCLHWCLPG 1260
TTTQQEGSNSNIVLLDTTSMSLLRPDGHPGPYRYPNPFAGLKNKELNQVQNDCLHWCLPG
Sbjct: 361 TTTQQEGSNSNIVLLDTTSMSLLRPDGHPGPYRYPNPFAGLKNKELNQVQNDCLHWCLPG 420
Query: 1261 PIDSWNDLMVEVMLNRERQRRE 1326
PIDSWNDLMVEVMLNRERQRRE
Sbjct: 421 PIDSWNDLMVEVMLNRERQRRE 442
>gb|AAO42299.1| unknown protein [Arabidopsis thaliana]
Length = 456
Score = 876 bits (2263), Expect = 0.0
Identities = 424/456 (92%), Positives = 424/456 (92%), Gaps = 14/456 (3%)
Frame = +1
Query: 1 MDSLRLISKSIKIEGTPFGSSHQRNQIFLKSVAFFLLIGLAYRFLIXXXXXXXXXXXXXX 180
MDSLRLISKSIKIEGTPFGSSHQRNQIFLKSVAFFLLIGLAYRFLI
Sbjct: 1 MDSLRLISKSIKIEGTPFGSSHQRNQIFLKSVAFFLLIGLAYRFLITNSTVSPVPTVRSS 60
Query: 181 XXXLPPDPSGLTAITQTSASVDSPANITTIASQN--------------DPSGPIYTNVSC 318
LPPDPSGLTAITQTSASVDSPANITTIASQN DPSGPIYTNVSC
Sbjct: 61 PESLPPDPSGLTAITQTSASVDSPANITTIASQNVSTKCDIFIGNWVPDPSGPIYTNVSC 120
Query: 319 RHIQDYQNCLKNGRPDVNYLRWRWQPRDCDLPRFNPEQFLDNMRNKWLAFIGDSISRNHV 498
RHIQDYQNCLKNGRPDVNYLRWRWQPRDCDLPRFNPEQFLDNMRNKWLAFIGDSISRNHV
Sbjct: 121 RHIQDYQNCLKNGRPDVNYLRWRWQPRDCDLPRFNPEQFLDNMRNKWLAFIGDSISRNHV 180
Query: 499 QSLLCILSQVEEVEDIFHDKEYKSRIWRFPSYNFTLSVIWSPFLVKAETFENGVPFSDIR 678
QSLLCILSQVEEVEDIFHDKEYKSRIWRFPSYNFTLSVIWSPFLVKAETFENGVPFSDIR
Sbjct: 181 QSLLCILSQVEEVEDIFHDKEYKSRIWRFPSYNFTLSVIWSPFLVKAETFENGVPFSDIR 240
Query: 679 VHLDKLDQKWTDQYINFDYVVISGGKWFLKTTIFHENNTVTGCHYCQGKNNMTELGYLYS 858
VHLDKLDQKWTDQYINFDYVVISGGKWFLKTTIFHENNTVTGCHYCQGKNNMTELGYLYS
Sbjct: 241 VHLDKLDQKWTDQYINFDYVVISGGKWFLKTTIFHENNTVTGCHYCQGKNNMTELGYLYS 300
Query: 859 YRKVLRLVLDFVAEPNHKAQVLFRTTTPDHFENGEWDSGGFCNRTMPFTEGSEGEMKSED 1038
YRKVL LVLDFVAEPNHKAQVLFRTTTPDHFENGEWDSGGFCNRTMPFTEGSEGEMKSED
Sbjct: 301 YRKVLHLVLDFVAEPNHKAQVLFRTTTPDHFENGEWDSGGFCNRTMPFTEGSEGEMKSED 360
Query: 1039 VSMRDIELEEFYKTTTTQQEGSNSNIVLLDTTSMSLLRPDGHPGPYRYPNPFAGLKNKEL 1218
VSMRDIELEEFYKTTTTQQEGSNSNIVLLDTTSMSLLRPDGHPGPYRYPNPFAGLKNKEL
Sbjct: 361 VSMRDIELEEFYKTTTTQQEGSNSNIVLLDTTSMSLLRPDGHPGPYRYPNPFAGLKNKEL 420
Query: 1219 NQVQNDCLHWCLPGPIDSWNDLMVEVMLNRERQRRE 1326
NQVQNDCLHWCLPGPIDSWNDLMVEVMLNRERQRRE
Sbjct: 421 NQVQNDCLHWCLPGPIDSWNDLMVEVMLNRERQRRE 456
>ref|NP_192017.1| hypothetical protein; protein id: At4g01080.1 [Arabidopsis
thaliana]|gi|7485221|pir||T01731 hypothetical protein
A_IG002N01.14 - Arabidopsis
thaliana|gi|2191135|gb|AAB61022.1| A_IG002N01.14 gene
product [Arabidopsis thaliana]|gi|7267605|emb|CAB80917.1|
hypothetical protein [Arabidopsis thaliana]
Length = 442
Score = 560 bits (1443), Expect = e-158
Identities = 276/434 (63%), Positives = 325/434 (74%), Gaps = 2/434 (0%)
Frame = +1
Query: 22 SKSIKIEGTPFGSSHQRNQIFLKSVAFFLLIGLAYRFLIXXXXXXXXXXXXXXXXXLPPD 201
S S P + H R++ F+K +F L+ LAY F+I +PP
Sbjct: 29 SSSSSSSSVPSCTDH-RHRTFVKFFLYFSLVALAYYFIISSLAVSP----------IPP- 76
Query: 202 PSGLTAITQTSASVDSPANITTIASQ--NDPSGPIYTNVSCRHIQDYQNCLKNGRPDVNY 375
+ Q+S S A DP+GP+YTNV+CRHIQD+QNCL NGRPDVNY
Sbjct: 77 -----TLPQSSPGNVSSAKCDLFTGDWIPDPTGPLYTNVTCRHIQDFQNCLLNGRPDVNY 131
Query: 376 LRWRWQPRDCDLPRFNPEQFLDNMRNKWLAFIGDSISRNHVQSLLCILSQVEEVEDIFHD 555
L WRW+PRDCDLPRF+P QFL +++NKW AFIGDSI+RNHVQSL+CILSQVEEVE+I+HD
Sbjct: 132 LFWRWKPRDCDLPRFSPSQFLASVKNKWWAFIGDSIARNHVQSLICILSQVEEVEEIYHD 191
Query: 556 KEYKSRIWRFPSYNFTLSVIWSPFLVKAETFENGVPFSDIRVHLDKLDQKWTDQYINFDY 735
KE++S+IWRFPS+NFTLSVIWSPFL+K+ET N SDI+++LD+LD KWT QY FDY
Sbjct: 192 KEFRSKIWRFPSHNFTLSVIWSPFLLKSETSSN----SDIQLYLDQLDHKWTVQYPKFDY 247
Query: 736 VVISGGKWFLKTTIFHENNTVTGCHYCQGKNNMTELGYLYSYRKVLRLVLDFVAEPNHKA 915
VVISGGKWFLKTTIFHENN VTGCHYCQG+NN+T+LGY YSYRK L L+ DFV HK
Sbjct: 248 VVISGGKWFLKTTIFHENNVVTGCHYCQGRNNLTDLGYDYSYRKTLNLLRDFVLNSTHKP 307
Query: 916 QVLFRTTTPDHFENGEWDSGGFCNRTMPFTEGSEGEMKSEDVSMRDIELEEFYKTTTTQQ 1095
VLFRTTTPDHFENGEW++GG+CNRTMPF EG + MK+ D MRD+ELE F K +
Sbjct: 308 LVLFRTTTPDHFENGEWNTGGYCNRTMPFKEG-QANMKTVDDVMRDVELEVFQK--FGKG 364
Query: 1096 EGSNSNIVLLDTTSMSLLRPDGHPGPYRYPNPFAGLKNKELNQVQNDCLHWCLPGPIDSW 1275
G SNI LLDTT MSLLRPDGHPGPYR+PNPFAG+KNK + VQNDCLHWCLPGPIDSW
Sbjct: 365 FGLGSNIRLLDTTGMSLLRPDGHPGPYRHPNPFAGVKNK--SNVQNDCLHWCLPGPIDSW 422
Query: 1276 NDLMVEVMLNRERQ 1317
ND+MVE LNRER+
Sbjct: 423 NDVMVETTLNRERE 436
>gb|AAO42025.1| unknown protein [Arabidopsis thaliana]
Length = 442
Score = 558 bits (1437), Expect = e-157
Identities = 275/434 (63%), Positives = 324/434 (74%), Gaps = 2/434 (0%)
Frame = +1
Query: 22 SKSIKIEGTPFGSSHQRNQIFLKSVAFFLLIGLAYRFLIXXXXXXXXXXXXXXXXXLPPD 201
S S P + H R++ F+K +F L+ LAY +I +PP
Sbjct: 29 SSSSSSSSVPSCTDH-RHRTFVKFFLYFSLVALAYYLIISSLAVSP----------IPP- 76
Query: 202 PSGLTAITQTSASVDSPANITTIASQ--NDPSGPIYTNVSCRHIQDYQNCLKNGRPDVNY 375
+ Q+S S A DP+GP+YTNV+CRHIQD+QNCL NGRPDVNY
Sbjct: 77 -----TLPQSSPGNVSSAKCDLFTGDWIPDPTGPLYTNVTCRHIQDFQNCLLNGRPDVNY 131
Query: 376 LRWRWQPRDCDLPRFNPEQFLDNMRNKWLAFIGDSISRNHVQSLLCILSQVEEVEDIFHD 555
L WRW+PRDCDLPRF+P QFL +++NKW AFIGDSI+RNHVQSL+CILSQVEEVE+I+HD
Sbjct: 132 LFWRWKPRDCDLPRFSPSQFLASVKNKWWAFIGDSIARNHVQSLICILSQVEEVEEIYHD 191
Query: 556 KEYKSRIWRFPSYNFTLSVIWSPFLVKAETFENGVPFSDIRVHLDKLDQKWTDQYINFDY 735
KE++S+IWRFPS+NFTLSVIWSPFL+K+ET N SDI+++LD+LD KWT QY FDY
Sbjct: 192 KEFRSKIWRFPSHNFTLSVIWSPFLLKSETSSN----SDIQLYLDQLDHKWTVQYPKFDY 247
Query: 736 VVISGGKWFLKTTIFHENNTVTGCHYCQGKNNMTELGYLYSYRKVLRLVLDFVAEPNHKA 915
VVISGGKWFLKTTIFHENN VTGCHYCQG+NN+T+LGY YSYRK L L+ DFV HK
Sbjct: 248 VVISGGKWFLKTTIFHENNVVTGCHYCQGRNNLTDLGYDYSYRKTLNLLRDFVLNSTHKP 307
Query: 916 QVLFRTTTPDHFENGEWDSGGFCNRTMPFTEGSEGEMKSEDVSMRDIELEEFYKTTTTQQ 1095
VLFRTTTPDHFENGEW++GG+CNRTMPF EG + MK+ D MRD+ELE F K +
Sbjct: 308 LVLFRTTTPDHFENGEWNTGGYCNRTMPFKEG-QANMKTVDDVMRDVELEVFQK--FGKG 364
Query: 1096 EGSNSNIVLLDTTSMSLLRPDGHPGPYRYPNPFAGLKNKELNQVQNDCLHWCLPGPIDSW 1275
G SNI LLDTT MSLLRPDGHPGPYR+PNPFAG+KNK + VQNDCLHWCLPGPIDSW
Sbjct: 365 FGLGSNIRLLDTTGMSLLRPDGHPGPYRHPNPFAGVKNK--SNVQNDCLHWCLPGPIDSW 422
Query: 1276 NDLMVEVMLNRERQ 1317
ND+MVE LNRER+
Sbjct: 423 NDVMVETTLNRERE 436
>ref|NP_192847.1| putative protein; protein id: At4g11090.1 [Arabidopsis
thaliana]|gi|7486350|pir||T01925 hypothetical protein
F2P3.4 - Arabidopsis thaliana|gi|3600054|gb|AAC35541.1|
F2P3.4 gene product [Arabidopsis
thaliana]|gi|4850288|emb|CAB43044.1| putative protein
[Arabidopsis thaliana]|gi|7267808|emb|CAB81210.1|
putative protein [Arabidopsis thaliana]
Length = 432
Score = 392 bits (1006), Expect = e-107
Identities = 200/425 (47%), Positives = 270/425 (63%), Gaps = 9/425 (2%)
Frame = +1
Query: 58 SSHQRNQIFLKSVAFFLLIGLAYRFLIXXXXXXX---XXXXXXXXXXLPPDPSGLTAITQ 228
S+ Q+N +K VA L+ LA+RF + + P S + + +
Sbjct: 9 SNLQQNTYLIKLVAATLITCLAFRFFVFRFGQFSPVQVSVTGNSNSQISPT-SVILSDNE 67
Query: 229 TSASVD---SPANITTIASQNDPSGPIYTNVSCRHIQD-YQNCLKNGRPDVNYLRWRWQP 396
VD ++ T DP GPIYTN SC + D +QNC+ NGRPD +L W+W+P
Sbjct: 68 DQIPVDIEVEKCDLFTGKWIKDPLGPIYTNESCGIVVDAHQNCITNGRPDSGFLNWKWKP 127
Query: 397 RDCDLPRFNPEQFLDNMRNKWLAFIGDSISRNHVQSLLCILSQVEEVEDIFHDKEYKSRI 576
DC LPRF+ +FL MRNK A IGDSI+RNHV+SLLC+LS VE+ +++HD+ Y+S+
Sbjct: 128 NDCSLPRFDSLRFLQLMRNKSWAIIGDSIARNHVESLLCMLSTVEKPVEVYHDENYRSKR 187
Query: 577 WRFPSYNFTLSVIWSPFLVKAETFE--NGVPFSDIRVHLDKLDQKWTDQYINFDYVVISG 750
W FPSYNFT+S IWSPFLV+A+ FE NGV + +++HLDKLD WTD + + DY +IS
Sbjct: 188 WHFPSYNFTVSNIWSPFLVQADIFEDSNGVSSAAVQLHLDKLDNTWTDLFPSLDYAIISS 247
Query: 751 GKWFLKTTIFHENNTVTGCHYCQGKNNMTELGYLYSYRKVLRLVLDFVAEPNHKAQVLFR 930
G+WFLKT ++HEN GCH C +NMT+LG+ Y+Y LR V+DF+A+ K + FR
Sbjct: 248 GEWFLKTAVYHENANPVGCHGCPESSNMTDLGFDYAYNTSLRHVMDFIAKSKTKGMIFFR 307
Query: 931 TTTPDHFENGEWDSGGFCNRTMPFTEGSEGEMKSEDVSMRDIELEEFYKTTTTQQEGSNS 1110
T+ PDHFE+GEW +GG C +T P E + EMK + +RD+E+ +F + T + S
Sbjct: 308 TSIPDHFEDGEWHNGGTCKKTEPVGEEAV-EMKVLNKILRDVEINQFERVVTEMGQES-E 365
Query: 1111 NIVLLDTTSMSLLRPDGHPGPYRYPNPFAGLKNKELNQVQNDCLHWCLPGPIDSWNDLMV 1290
N+ LLD M L RPDGHPGPYR PF KN VQNDCLHWCLPGPID ND+++
Sbjct: 366 NLKLLDFAGMLLTRPDGHPGPYREFRPFDKDKNA---TVQNDCLHWCLPGPIDHLNDVIL 422
Query: 1291 EVMLN 1305
E+++N
Sbjct: 423 EIIVN 427
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 127
effective length of database: 259,129,699
effective search space used: 94841469834
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)