BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.24.C1
(1995 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM97072.1| putative protein [Arabidopsis thaliana]|gi|2... 674 0.0
ref|NP_196260.1| putative protein; protein id: At5g06420.1,... 670 0.0
ref|NP_171642.1| hypothetical protein; protein id: At1g0135... 570 e-161
dbj|BAC42988.1| unknown protein [Arabidopsis thaliana] 564 e-159
pir||G86143 probable zinc finger protein [imported] - Arabi... 487 e-136
>gb|AAM97072.1| putative protein [Arabidopsis thaliana]|gi|23198042|gb|AAN15548.1|
putative protein [Arabidopsis thaliana]
Length = 378
Score = 674 bits (1739), Expect = 0.0
Identities = 330/378 (87%), Positives = 330/378 (87%)
Frame = +2
Query: 689 MEPFVVKENIVASASSPMKKRRIDHTEXXXXXXXXXXXXXXXXXXXTVMNMAEFGNDNSN 868
MEPFVVKENIVASASSPMKKRRIDHTE TVMNMAEFGNDNSN
Sbjct: 1 MEPFVVKENIVASASSPMKKRRIDHTESADGSAINASNSSSIGGNDTVMNMAEFGNDNSN 60
Query: 869 NQESQQVCTFFKKPTKSKNIRKRTIXXXXXXXXXXXXXXILQNLKKVAKPDSNLYFSSGP 1048
NQESQQVCTFFKKPTKSKNIRKRTI ILQNLKKVAKPDSNLYFSSGP
Sbjct: 61 NQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYFSSGP 120
Query: 1049 STRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADHALKG 1228
STRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADHALKG
Sbjct: 121 STRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADHALKG 180
Query: 1229 NKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAEGSHGPLRASAHIRVSARFDYQPDI 1408
NKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAEGSHGPLRASAHIRVSARFDYQPDI
Sbjct: 181 NKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAEGSHGPLRASAHIRVSARFDYQPDI 240
Query: 1409 CKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVXXXXXXXXXX 1588
CKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGV
Sbjct: 241 CKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDDDDEADKD 300
Query: 1589 XXXXXNALPFACFICRDPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAA 1768
NALPFACFICRDPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAA
Sbjct: 301 SDEDENALPFACFICRDPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAA 360
Query: 1769 HEIKKRMAEERSKAEQGL 1822
HEIKKRMAEERSKAEQGL
Sbjct: 361 HEIKKRMAEERSKAEQGL 378
>ref|NP_196260.1| putative protein; protein id: At5g06420.1, supported by cDNA: 3542.
[Arabidopsis thaliana]|gi|9758422|dbj|BAB08964.1|
contains similarity to zinc finger
protein~gene_id:MHF15.6 [Arabidopsis
thaliana]|gi|21618279|gb|AAM67329.1| unknown [Arabidopsis
thaliana]
Length = 378
Score = 670 bits (1728), Expect = 0.0
Identities = 328/378 (86%), Positives = 329/378 (86%)
Frame = +2
Query: 689 MEPFVVKENIVASASSPMKKRRIDHTEXXXXXXXXXXXXXXXXXXXTVMNMAEFGNDNSN 868
MEPFVVKENIVASASSPMKKRRIDHTE TVMNMAEFGNDNSN
Sbjct: 1 MEPFVVKENIVASASSPMKKRRIDHTESADGSAINASNSSSIGGNDTVMNMAEFGNDNSN 60
Query: 869 NQESQQVCTFFKKPTKSKNIRKRTIXXXXXXXXXXXXXXILQNLKKVAKPDSNLYFSSGP 1048
NQESQQVCTFFKKPTKSKNIRKRTI ILQNLKKVAKPDSNLYFSSGP
Sbjct: 61 NQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYFSSGP 120
Query: 1049 STRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADHALKG 1228
STRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADHALKG
Sbjct: 121 STRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADHALKG 180
Query: 1229 NKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAEGSHGPLRASAHIRVSARFDYQPDI 1408
NKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKA GSHGPLRASAHIRVSARFDYQPDI
Sbjct: 181 NKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARFDYQPDI 240
Query: 1409 CKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVXXXXXXXXXX 1588
CKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGV
Sbjct: 241 CKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDDDDEADKD 300
Query: 1589 XXXXXNALPFACFICRDPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAA 1768
NALPFACFICR+PFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAA
Sbjct: 301 SDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAA 360
Query: 1769 HEIKKRMAEERSKAEQGL 1822
HEIKKRMAEERSKAEQGL
Sbjct: 361 HEIKKRMAEERSKAEQGL 378
>ref|NP_171642.1| hypothetical protein; protein id: At1g01350.1 [Arabidopsis thaliana]
Length = 586
Score = 570 bits (1470), Expect = e-161
Identities = 279/319 (87%), Positives = 282/319 (87%), Gaps = 3/319 (0%)
Frame = +2
Query: 875 ESQQVCTFFKKPTKSKNIRKRTIXXXXXXXXXXXXXXILQNLKKVAKPDSNLYFSSGPS- 1051
+SQQVCTFFKKPTKSKNIRKRTI ILQNLKKVAKPDS LYFSSGPS
Sbjct: 25 QSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSGPSK 84
Query: 1052 --TRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADHALK 1225
T TSGAPER VFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKAD ALK
Sbjct: 85 SSTTTSGAPERSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADEALK 144
Query: 1226 GNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAEGSHGPLRASAHIRVSARFDYQPD 1405
GNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKA GSHGPLRASAHIRVSARFDYQPD
Sbjct: 145 GNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARFDYQPD 204
Query: 1406 ICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVXXXXXXXXX 1585
ICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGV
Sbjct: 205 ICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDEDDEADK 264
Query: 1586 XXXXXXNALPFACFICRDPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNA 1765
NALPFACFICR+PF+DPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNA
Sbjct: 265 DSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNA 324
Query: 1766 AHEIKKRMAEERSKAEQGL 1822
AHEIKKRMAEERSKAEQGL
Sbjct: 325 AHEIKKRMAEERSKAEQGL 343
>dbj|BAC42988.1| unknown protein [Arabidopsis thaliana]
Length = 343
Score = 564 bits (1454), Expect = e-159
Identities = 277/319 (86%), Positives = 280/319 (86%), Gaps = 3/319 (0%)
Frame = +2
Query: 875 ESQQVCTFFKKPTKSKNIRKRTIXXXXXXXXXXXXXXILQNLKKVAKPDSNLYFSSGPS- 1051
+SQQVCTFFKKPTKSKNIRKRTI ILQNLKKVAKPDS LYFSSGPS
Sbjct: 25 QSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSGPSK 84
Query: 1052 --TRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADHALK 1225
T TSGAPER VFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKAD ALK
Sbjct: 85 SSTTTSGAPERSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADEALK 144
Query: 1226 GNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAEGSHGPLRASAHIRVSARFDYQPD 1405
GNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKA GSHGPLRASAHIRVSARFDYQPD
Sbjct: 145 GNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARFDYQPD 204
Query: 1406 ICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVXXXXXXXXX 1585
ICKDYKETGYCGYGDSCKFLHDRGDYK GWQIEKEWEEAEKVRKRNKAMGV
Sbjct: 205 ICKDYKETGYCGYGDSCKFLHDRGDYKSGWQIEKEWEEAEKVRKRNKAMGVEDEDDEADK 264
Query: 1586 XXXXXXNALPFACFICRDPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNA 1765
NALPFACFICR+PF+DPVVTKCKHYFCEHCALK HTKNKKCFVCNQPTMGIFNA
Sbjct: 265 DSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALKRHTKNKKCFVCNQPTMGIFNA 324
Query: 1766 AHEIKKRMAEERSKAEQGL 1822
AHEIKKRMAEERSKAEQGL
Sbjct: 325 AHEIKKRMAEERSKAEQGL 343
>pir||G86143 probable zinc finger protein [imported] - Arabidopsis
thaliana|gi|9665151|gb|AAF97335.1|AC023628_16 Putative
zinc finger protein [Arabidopsis thaliana]
Length = 304
Score = 487 bits (1253), Expect = e-136
Identities = 239/279 (85%), Positives = 242/279 (86%), Gaps = 3/279 (1%)
Frame = +2
Query: 875 ESQQVCTFFKKPTKSKNIRKRTIXXXXXXXXXXXXXXILQNLKKVAKPDSNLYFSSGPS- 1051
+SQQVCTFFKKPTKSKNIRKRTI ILQNLKKVAKPDS LYFSSGPS
Sbjct: 25 QSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSGPSK 84
Query: 1052 --TRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADHALK 1225
T TSGAPER VFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKAD ALK
Sbjct: 85 SSTTTSGAPERSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADEALK 144
Query: 1226 GNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAEGSHGPLRASAHIRVSARFDYQPD 1405
GNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKA GSHGPLRASAHIRVSARFDYQPD
Sbjct: 145 GNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARFDYQPD 204
Query: 1406 ICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVXXXXXXXXX 1585
ICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGV
Sbjct: 205 ICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDEDDEADK 264
Query: 1586 XXXXXXNALPFACFICRDPFLDPVVTKCKHYFCEHCALK 1702
NALPFACFICR+PF+DPVVTKCKHYFCEHCALK
Sbjct: 265 DSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALK 303
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 130
effective length of database: 255,112,561
effective search space used: 136230107574
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)