BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.22.C1
(1847 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171637.1| chloroplast nucleoid DNA binding protein, ... 812 0.0
gb|AAM66061.1| chloroplast nucleoid DNA binding protein, pu... 803 0.0
ref|NP_191741.1| putative protein; protein id: At3g61820.1,... 545 e-154
dbj|BAB63755.1| nucleoid DNA-binding protein cnd41-like pro... 456 e-127
dbj|BAB21205.1| nucleoid DNA-binding protein cnd41-like pro... 363 5e-99
>ref|NP_171637.1| chloroplast nucleoid DNA binding protein, putative; protein id:
At1g01300.1, supported by cDNA: 7567. [Arabidopsis
thaliana]|gi|25518405|pir||C86143 hypothetical protein
F6F3.10 - Arabidopsis
thaliana|gi|9665144|gb|AAF97328.1|AC023628_9 Unknown
protein [Arabidopsis thaliana]|gi|22135930|gb|AAM91547.1|
chloroplast nucleoid DNA binding protein, putative
[Arabidopsis thaliana]
Length = 485
Score = 812 bits (2097), Expect = 0.0
Identities = 405/457 (88%), Positives = 405/457 (88%)
Frame = +3
Query: 231 QTLFPNSHSLPCASPVSFQPXXXXXXXXXXXXXXXXXXXXXXXITLNLDHIDALSSNKTP 410
QTLFPNSHSLPCASPVSFQP ITLNLDHIDALSSNKTP
Sbjct: 29 QTLFPNSHSLPCASPVSFQPDSDSESLLESEFESGSDSESSSSITLNLDHIDALSSNKTP 88
Query: 411 DELFSSRLQRDSRRVKSIATLAAQIPGRNVTHAPRPXXXXXXXXXXXXXXXXEYFTRLGV 590
DELFSSRLQRDSRRVKSIATLAAQIPGRNVTHAPRP EYFTRLGV
Sbjct: 89 DELFSSRLQRDSRRVKSIATLAAQIPGRNVTHAPRPGGFSSSVVSGLSQGSGEYFTRLGV 148
Query: 591 GTPARYVYMVLDTGSDIVWLQCAPCRRCYSQSDPIFDPRKSKTYATIPCSSPHCRRLDSA 770
GTPARYVYMVLDTGSDIVWLQCAPCRRCYSQSDPIFDPRKSKTYATIPCSSPHCRRLDSA
Sbjct: 149 GTPARYVYMVLDTGSDIVWLQCAPCRRCYSQSDPIFDPRKSKTYATIPCSSPHCRRLDSA 208
Query: 771 GCNTRRKTCLYQVSYGDGSFTVGDFSTETLTFRRNRVKGVALGCGHDNEGLFVXXXXXXX 950
GCNTRRKTCLYQVSYGDGSFTVGDFSTETLTFRRNRVKGVALGCGHDNEGLFV
Sbjct: 209 GCNTRRKTCLYQVSYGDGSFTVGDFSTETLTFRRNRVKGVALGCGHDNEGLFVGAAGLLG 268
Query: 951 XXXXXXSFPGQTGHRFNQKFSYCLVDRSASSKPSSVVFGNAAVSRIARFTPLLSNPKLDT 1130
SFPGQTGHRFNQKFSYCLVDRSASSKPSSVVFGNAAVSRIARFTPLLSNPKLDT
Sbjct: 269 LGKGKLSFPGQTGHRFNQKFSYCLVDRSASSKPSSVVFGNAAVSRIARFTPLLSNPKLDT 328
Query: 1131 FYYVGLLGISVGGTRVPGVTASLFKLDQIGNGGVIIDSGTSVTRLIRPAYIAMRDAFRVG 1310
FYYVGLLGISVGGTRVPGVTASLFKLDQIGNGGVIIDSGTSVTRLIRPAYIAMRDAFRVG
Sbjct: 329 FYYVGLLGISVGGTRVPGVTASLFKLDQIGNGGVIIDSGTSVTRLIRPAYIAMRDAFRVG 388
Query: 1311 AKTLKRAPDFSLFDTCFDLSNMNEVKVPTVVLHFRGADVSLPATNYLIPVDTNGKFCFAF 1490
AKTLKRAPDFSLFDTCFDLSNMNEVKVPTVVLHFRGADVSLPATNYLIPVDTNGKFCFAF
Sbjct: 389 AKTLKRAPDFSLFDTCFDLSNMNEVKVPTVVLHFRGADVSLPATNYLIPVDTNGKFCFAF 448
Query: 1491 AGTMGGLSIIGNIQQQGFRVVYDLASSRVGFAPGGCA 1601
AGTMGGLSIIGNIQQQGFRVVYDLASSRVGFAPGGCA
Sbjct: 449 AGTMGGLSIIGNIQQQGFRVVYDLASSRVGFAPGGCA 485
>gb|AAM66061.1| chloroplast nucleoid DNA binding protein, putative [Arabidopsis
thaliana]
Length = 485
Score = 803 bits (2075), Expect = 0.0
Identities = 401/457 (87%), Positives = 403/457 (87%)
Frame = +3
Query: 231 QTLFPNSHSLPCASPVSFQPXXXXXXXXXXXXXXXXXXXXXXXITLNLDHIDALSSNKTP 410
QTLFPNSHSLPCASPVSFQP ITLNLDHIDALSSNKTP
Sbjct: 29 QTLFPNSHSLPCASPVSFQPDSDSESLLESEFESGSDSESSSSITLNLDHIDALSSNKTP 88
Query: 411 DELFSSRLQRDSRRVKSIATLAAQIPGRNVTHAPRPXXXXXXXXXXXXXXXXEYFTRLGV 590
ELFSSRLQRDSRRV+SIATLAAQIPGRNVTHAPRP EYFTRLGV
Sbjct: 89 QELFSSRLQRDSRRVRSIATLAAQIPGRNVTHAPRPGGFSSSVVSGLSQGSGEYFTRLGV 148
Query: 591 GTPARYVYMVLDTGSDIVWLQCAPCRRCYSQSDPIFDPRKSKTYATIPCSSPHCRRLDSA 770
GTPARYVYMVLDTGSDIVWLQCAPCRRCYSQSDPIFDPRKSKTYATIPCSSPHCRRLDSA
Sbjct: 149 GTPARYVYMVLDTGSDIVWLQCAPCRRCYSQSDPIFDPRKSKTYATIPCSSPHCRRLDSA 208
Query: 771 GCNTRRKTCLYQVSYGDGSFTVGDFSTETLTFRRNRVKGVALGCGHDNEGLFVXXXXXXX 950
GCNTRRKTCLYQVSYGDGSFTVGDFSTETLTFRRNRVKGVALGCGHDNEGLFV
Sbjct: 209 GCNTRRKTCLYQVSYGDGSFTVGDFSTETLTFRRNRVKGVALGCGHDNEGLFVGAAGLLG 268
Query: 951 XXXXXXSFPGQTGHRFNQKFSYCLVDRSASSKPSSVVFGNAAVSRIARFTPLLSNPKLDT 1130
SFPGQTGHRFNQKFSYCLVDRSASSKPSSVVFGNAAVSRIARFTPLLSNPKLDT
Sbjct: 269 LGKGKLSFPGQTGHRFNQKFSYCLVDRSASSKPSSVVFGNAAVSRIARFTPLLSNPKLDT 328
Query: 1131 FYYVGLLGISVGGTRVPGVTASLFKLDQIGNGGVIIDSGTSVTRLIRPAYIAMRDAFRVG 1310
FYYVGLLGISVGGTRVPGVTASLFKLDQIGNGGVIIDSGTSVTRLIRPAYIAMRDAFRVG
Sbjct: 329 FYYVGLLGISVGGTRVPGVTASLFKLDQIGNGGVIIDSGTSVTRLIRPAYIAMRDAFRVG 388
Query: 1311 AKTLKRAPDFSLFDTCFDLSNMNEVKVPTVVLHFRGADVSLPATNYLIPVDTNGKFCFAF 1490
AKTLKRAP+FSLFDTCFDLSNMNEVKVPTVVLHFR ADVSLPATNYLIPVDTNGKFCFAF
Sbjct: 389 AKTLKRAPNFSLFDTCFDLSNMNEVKVPTVVLHFRRADVSLPATNYLIPVDTNGKFCFAF 448
Query: 1491 AGTMGGLSIIGNIQQQGFRVVYDLASSRVGFAPGGCA 1601
AGTMGGLSIIGNIQQQGFRVVYDLASSRVGFAPGGCA
Sbjct: 449 AGTMGGLSIIGNIQQQGFRVVYDLASSRVGFAPGGCA 485
>ref|NP_191741.1| putative protein; protein id: At3g61820.1, supported by cDNA:
gi_14532549 [Arabidopsis
thaliana]|gi|11357465|pir||T47974 hypothetical protein
F15G16.210 - Arabidopsis
thaliana|gi|6850873|emb|CAB71112.1| putative protein
[Arabidopsis thaliana]
Length = 483
Score = 545 bits (1405), Expect = e-154
Identities = 283/423 (66%), Positives = 322/423 (75%), Gaps = 10/423 (2%)
Frame = +3
Query: 360 ITLNLDHIDALSS--NKTPDELFSSRLQRDSRRVKSIATLAAQIPGRNVT-HAPRPXXXX 530
++++L H+DALSS + +P +LF+ RLQRDS RVKSI +LAA GRN T PR
Sbjct: 61 LSVHLSHVDALSSFSDASPADLFNLRLQRDSLRVKSITSLAAVSTGRNATKRTPRTAGGF 120
Query: 531 XXXXXXXXXXXX-EYFTRLGVGTPARYVYMVLDTGSDIVWLQCAPCRRCYSQSDPIFDPR 707
EYF RLGVGTPA VYMVLDTGSD+VWLQC+PC+ CY+Q+D IFDP+
Sbjct: 121 SGAVISGLSQGSGEYFMRLGVGTPATNVYMVLDTGSDVVWLQCSPCKACYNQTDAIFDPK 180
Query: 708 KSKTYATIPCSSPHCRRLD-SAGCNTRR-KTCLYQVSYGDGSFTVGDFSTETLTFRRNRV 881
KSKT+AT+PC S CRRLD S+ C TRR KTCLYQVSYGDGSFT GDFSTETLTF RV
Sbjct: 181 KSKTFATVPCGSRLCRRLDDSSECVTRRSKTCLYQVSYGDGSFTEGDFSTETLTFHGARV 240
Query: 882 KGVALGCGHDNEGLFVXXXXXXXXXXXXXSFPGQTGHRFNQKFSYCLVDR----SASSKP 1049
V LGCGHDNEGLFV SFP QT +R+N KFSYCLVDR S+S P
Sbjct: 241 DHVPLGCGHDNEGLFVGAAGLLGLGRGGLSFPSQTKNRYNGKFSYCLVDRTSSGSSSKPP 300
Query: 1050 SSVVFGNAAVSRIARFTPLLSNPKLDTFYYVGLLGISVGGTRVPGVTASLFKLDQIGNGG 1229
S++VFGNAAV + + FTPLL+NPKLDTFYY+ LLGISVGG+RVPGV+ S FKLD GNGG
Sbjct: 301 STIVFGNAAVPKTSVFTPLLTNPKLDTFYYLQLLGISVGGSRVPGVSESQFKLDATGNGG 360
Query: 1230 VIIDSGTSVTRLIRPAYIAMRDAFRVGAKTLKRAPDFSLFDTCFDLSNMNEVKVPTVVLH 1409
VIIDSGTSVTRL +PAY+A+RDAFR+GA LKRAP +SLFDTCFDLS M VKVPTVV H
Sbjct: 361 VIIDSGTSVTRLTQPAYVALRDAFRLGATKLKRAPSYSLFDTCFDLSGMTTVKVPTVVFH 420
Query: 1410 FRGADVSLPATNYLIPVDTNGKFCFAFAGTMGGLSIIGNIQQQGFRVVYDLASSRVGFAP 1589
F G +VSLPA+NYLIPV+T G+FCFAFAGTMG LSIIGNIQQQGFRV YDL SRVGF
Sbjct: 421 FGGGEVSLPASNYLIPVNTEGRFCFAFAGTMGSLSIIGNIQQQGFRVAYDLVGSRVGFLS 480
Query: 1590 GGC 1598
C
Sbjct: 481 RAC 483
>dbj|BAB63755.1| nucleoid DNA-binding protein cnd41-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 500
Score = 456 bits (1174), Expect = e-127
Identities = 242/427 (56%), Positives = 284/427 (65%), Gaps = 14/427 (3%)
Frame = +3
Query: 360 ITLNLDHIDALSSNKTPDELFSSRLQRDSRRVKSIATLA---AQIPGRNVTHAPRPXXXX 530
+ L + H D + N T EL + RL+RD RR I+ A A G V
Sbjct: 74 VGLRVVHRDDFAVNATAAELLAHRLRRDKRRASRISAAAGGAAAANGTRVGGGGGGSGFV 133
Query: 531 XXXXXXXXXXXXEYFTRLGVGTPARYVYMVLDTGSDIVWLQCAPCRRCYSQSDPIFDPRK 710
EYFT++GVGTP MVLDTGSD+VWLQCAPCRRCY QS +FDPR
Sbjct: 134 APVVSGLAQGSGEYFTKIGVGTPVTPALMVLDTGSDVVWLQCAPCRRCYDQSGQMFDPRA 193
Query: 711 SKTYATIPCSSPHCRRLDSAGCNTRRKTCLYQVSYGDGSFTVGDFSTETLTFRRN-RVKG 887
S +Y + C++P CRRLDS GC+ RRK CLYQV+YGDGS T GDF+TETLTF RV
Sbjct: 194 SHSYGAVDCAAPLCRRLDSGGCDLRRKACLYQVAYGDGSVTAGDFATETLTFASGARVPR 253
Query: 888 VALGCGHDNEGLFVXXXXXXXXXXXXXSFPGQTGHRFNQKFSYCLVDR-----SASSKPS 1052
VALGCGHDNEGLFV SFP Q RF + FSYCLVDR SA+S+ S
Sbjct: 254 VALGCGHDNEGLFVAAAGLLGLGRGSLSFPSQISRRFGRSFSYCLVDRTSSSASATSRSS 313
Query: 1053 SVVFGNAAV--SRIARFTPLLSNPKLDTFYYVGLLGISVGGTRVPGVTASLFKLD-QIGN 1223
+V FG+ AV S A FTP++ NP+++TFYYV L+GISVGG RVPGV S +LD G
Sbjct: 314 TVTFGSGAVGPSAAASFTPMVKNPRMETFYYVQLMGISVGGARVPGVAVSDLRLDPSTGR 373
Query: 1224 GGVIIDSGTSVTRLIRPAYIAMRDAFRVGAKTLKRAP-DFSLFDTCFDLSNMNEVKVPTV 1400
GGVI+DSGTSVTRL RPAY A+RDAFR A L+ +P FSLFDTC+DLS + VKVPTV
Sbjct: 374 GGVIVDSGTSVTRLARPAYAALRDAFRAAAAGLRLSPGGFSLFDTCYDLSGLKVVKVPTV 433
Query: 1401 VLHFR-GADVSLPATNYLIPVDTNGKFCFAFAGTMGGLSIIGNIQQQGFRVVYDLASSRV 1577
+HF GA+ +LP NYLIPVD+ G FCFAFAGT GG+SIIGNIQQQGFRVV+D R+
Sbjct: 434 SMHFAGGAEAALPPENYLIPVDSRGTFCFAFAGTDGGVSIIGNIQQQGFRVVFDGDGQRL 493
Query: 1578 GFAPGGC 1598
GF P GC
Sbjct: 494 GFVPKGC 500
>dbj|BAB21205.1| nucleoid DNA-binding protein cnd41-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 504
Score = 363 bits (932), Expect = 5e-99
Identities = 195/406 (48%), Positives = 247/406 (60%), Gaps = 12/406 (2%)
Frame = +3
Query: 417 LFSSRLQRDSRRVKSIATLAAQ----------IPGRNVTHAPRPXXXXXXXXXXXXXXXX 566
L +RL+RDS R +++ AA +P
Sbjct: 106 LVLARLRRDSARAAAVSARAAMAADGVSRFDLVPANVTAFEASAAEIQGPVVSGVGLGSG 165
Query: 567 EYFTRLGVGTPARYVYMVLDTGSDIVWLQCAPCRRCYSQSDPIFDPRKSKTYATIPCSSP 746
EYF+R+GVG+PAR +YMVLDTGSD+ W+QC PC CY QSDP+FDP S +YA++ C +P
Sbjct: 166 EYFSRVGVGSPARQLYMVLDTGSDVTWVQCQPCADCYQQSDPVFDPSLSTSYASVACDNP 225
Query: 747 HCRRLDSAGCNTRRKTCLYQVSYGDGSFTVGDFSTETLTFRRNR-VKGVALGCGHDNEGL 923
C LD+A C CLY+V+YGDGS+TVGDF+TETLT + V VA+GCGHDNEGL
Sbjct: 226 RCHDLDAAACRNSTGACLYEVAYGDGSYTVGDFATETLTLGDSAPVSSVAIGCGHDNEGL 285
Query: 924 FVXXXXXXXXXXXXXSFPGQTGHRFNQKFSYCLVDRSASSKPSSVVFGNAAVSRIARFTP 1103
FV SFP Q FSYCLVDR + S S++ FG+AA + + P
Sbjct: 286 FVGAAGLLALGGGPLSFPSQIS---ATTFSYCLVDRDSPSS-STLQFGDAADAEVT--AP 339
Query: 1104 LLSNPKLDTFYYVGLLGISVGGTRVPGVTASLFKLDQIGNGGVIIDSGTSVTRLIRPAYI 1283
L+ +P+ TFYYVGL G+SVGG ++ + S F +D G GGVI+DSGT+VTRL AY
Sbjct: 340 LIRSPRTSTFYYVGLSGLSVGG-QILSIPPSAFAMDSTGAGGVIVDSGTAVTRLQSSAYA 398
Query: 1284 AMRDAFRVGAKTLKRAPDFSLFDTCFDLSNMNEVKVPTVVLHFR-GADVSLPATNYLIPV 1460
A+RDAF G ++L R SLFDTC+DLS+ V+VP V L F G ++ LPA NYLIPV
Sbjct: 399 ALRDAFVRGTQSLPRTSGVSLFDTCYDLSDRTSVEVPAVSLRFAGGGELRLPAKNYLIPV 458
Query: 1461 DTNGKFCFAFAGTMGGLSIIGNIQQQGFRVVYDLASSRVGFAPGGC 1598
D G +C AFA T +SIIGN+QQQG RV +D A S VGF C
Sbjct: 459 DGAGTYCLAFAPTNAAVSIIGNVQQQGTRVSFDTAKSTVGFTTNKC 504
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 129
effective length of database: 256,451,607
effective search space used: 124635481002
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)