BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01180.f
(1437 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171626.1| hypothetical protein; protein id: At1g0118... 946 0.0
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana] 123 6e-27
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thalia... 123 8e-27
pir||A86359 hypothetical protein F12K8.9 - Arabidopsis thal... 114 4e-24
ref|NP_179259.1| putative non-LTR retroelement reverse tran... 103 9e-21
>ref|NP_171626.1| hypothetical protein; protein id: At1g01180.1 [Arabidopsis
thaliana]|gi|25406717|pir||A86142 protein T25K16.17
[imported] - Arabidopsis
thaliana|gi|6715637|gb|AAF26464.1|AC007323_5 T25K16.17
[Arabidopsis thaliana]
Length = 478
Score = 946 bits (2444), Expect = 0.0
Identities = 469/478 (98%), Positives = 469/478 (98%)
Frame = +1
Query: 1 MKEDRRLPHKRDAFQFLKTKAAYVIVIVLTYAFGYFSAYHYHXXXXXXXXXSTTAVETTK 180
MKEDRRLPHKRDAFQFLKTKAAYVIVIVLTYAFGYFSAYHYH STTAVETTK
Sbjct: 1 MKEDRRLPHKRDAFQFLKTKAAYVIVIVLTYAFGYFSAYHYHQPLQQQLPPSTTAVETTK 60
Query: 181 PQVCSIDNFRVTTPCGNLVPPELIRQTVIDRIFNGTSPYIDFPPPHAKKFLRPKRIKGWG 360
PQVCSIDNFRVTTPCGNLVPPELIRQTVIDRIFNGTSPYIDFPPPHAKKFLRPKRIKGWG
Sbjct: 61 PQVCSIDNFRVTTPCGNLVPPELIRQTVIDRIFNGTSPYIDFPPPHAKKFLRPKRIKGWG 120
Query: 361 SYGAVFENLIRRVKPKTIVEVGSFLGASAIHMANLTRRLGLEETQILCVDDFRGWPGFRD 540
SYGAVFENLIRRVKPKTIVEVGSFLGASAIHMANLTRRLGLEETQILCVDDFRGWPGFRD
Sbjct: 121 SYGAVFENLIRRVKPKTIVEVGSFLGASAIHMANLTRRLGLEETQILCVDDFRGWPGFRD 180
Query: 541 RFKDMALVNGDVLLMYQFMQNVVISDFSGSILPVPFSTGSALEKLCEWGVTADLVEIDAG 720
RFKDMALVNGDVLLMYQFMQNVVISDFSGSILPVPFSTGSALEKLCEWGVTADLVEIDAG
Sbjct: 181 RFKDMALVNGDVLLMYQFMQNVVISDFSGSILPVPFSTGSALEKLCEWGVTADLVEIDAG 240
Query: 721 HDFNSAWADINRAVRILRPGGVIFGHDYFTAADNRGVRRAVNLFAEINRLKVKTDGQHWV 900
HDFNSAWADINRAVRILRPGGVIFGHDYFTAADNRGVRRAVNLFAEINRLKVKTDGQHWV
Sbjct: 241 HDFNSAWADINRAVRILRPGGVIFGHDYFTAADNRGVRRAVNLFAEINRLKVKTDGQHWV 300
Query: 901 IDSVKVINKGTRFAISKTVAKIKEDANQWFFAQVLENQDLVNEQAVHISVKVLRGFLRDE 1080
IDSVKVINKGTRFAISKTVAKIKEDANQWFFAQVLENQDLVNEQAVHISVKVLRGFLRDE
Sbjct: 301 IDSVKVINKGTRFAISKTVAKIKEDANQWFFAQVLENQDLVNEQAVHISVKVLRGFLRDE 360
Query: 1081 HGKVLIHARRSFASVHSKLDATFLCWQWAMESMKSLRVDKIIFASEDNDLIGAVTRLPSW 1260
HGKVLIHARRSFASVHSKLDATFLCWQWAMESMKSLRVDKIIFASEDNDLIGAVTRLPSW
Sbjct: 361 HGKVLIHARRSFASVHSKLDATFLCWQWAMESMKSLRVDKIIFASEDNDLIGAVTRLPSW 420
Query: 1261 PSYKFQIHFLLGELIRSSNLGAHLIAKSVTMEDRRQSYVATGFPFWLKHLFEKERSIA 1434
PSYKFQIHFLLGELIRSSNLGAHLIAKSVTMEDRRQSYVATGFPFWLKHLFEKERSIA
Sbjct: 421 PSYKFQIHFLLGELIRSSNLGAHLIAKSVTMEDRRQSYVATGFPFWLKHLFEKERSIA 478
>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 123 bits (309), Expect = 6e-27
Identities = 80/219 (36%), Positives = 112/219 (50%), Gaps = 23/219 (10%)
Frame = +1
Query: 844 NLFAEINRLKVKTDGQHWVIDSVKV---------------INKGTRFAISKTVAKIKEDA 978
++++ IN L D + W I+ K+ I +G + + TV KI++D
Sbjct: 1063 SIYSNINHLLENKDNKEWPINLRKIFPWILWRIWKNRNSFIFEGISYPATDTVIKIRDDV 1122
Query: 979 NQWFFAQVLENQ-DLVN---EQAVHISVKVLRGFL----RDEHGKVLIHARRSFASVHSK 1134
+WF AQ L+ + +N VH V + G VL+H+RRSFA + SK
Sbjct: 1123 VEWFEAQCLDGEGSALNPPLSNGVHFVGSVSENLWIKPPANWDGIVLLHSRRSFAPISSK 1182
Query: 1135 LDATFLCWQWAMESMKSLRVDKIIFASEDNDLIGAVTRLPSWPSYKFQIHFLLGELIRSS 1314
DA C WAMESM S ++D IIFA +D LIGAV R +WPS+K Q
Sbjct: 1183 ADALLRCLLWAMESMASHKIDNIIFAFQDKSLIGAVLRPRAWPSFKAQ------------ 1230
Query: 1315 NLGAHLIAKSVTMEDRRQSYVATGFPFWLKHLFEKERSI 1431
A+LIA+SVT R QSYVA G P+W+ +F +ER +
Sbjct: 1231 --RANLIAQSVTEASRSQSYVAVGHPYWMNGVFVEERGL 1267
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis
thaliana|gi|9945082|gb|AAG03119.1|AC004133_13 F5A9.24
[Arabidopsis thaliana]
Length = 1254
Score = 123 bits (308), Expect = 8e-27
Identities = 75/174 (43%), Positives = 100/174 (57%), Gaps = 8/174 (4%)
Frame = +1
Query: 928 GTRFAISKTVAKIKEDANQWFFAQVLENQ-DLVN---EQAVHISVKVLRGFL----RDEH 1083
G + + TV KI++D +WF AQ L+ + +N VH V +
Sbjct: 1054 GISYPATDTVIKIRDDVVEWFEAQCLDGEGSALNPPLSNGVHFVGSVSENLWIKPPANWD 1113
Query: 1084 GKVLIHARRSFASVHSKLDATFLCWQWAMESMKSLRVDKIIFASEDNDLIGAVTRLPSWP 1263
G VL+H+RRSFA + SK DA C WAMESM S ++D IIFA +D LIGAV R +WP
Sbjct: 1114 GIVLLHSRRSFAPISSKADALLRCLLWAMESMASHKIDNIIFAFQDKSLIGAVLRPRAWP 1173
Query: 1264 SYKFQIHFLLGELIRSSNLGAHLIAKSVTMEDRRQSYVATGFPFWLKHLFEKER 1425
S+K Q L ++N GA+LIA+SVT R QSYVA G P+W+ +F +ER
Sbjct: 1174 SFKAQSVEL---EFSAANRGANLIAQSVTEASRSQSYVAVGHPYWMNGVFVEER 1224
>pir||A86359 hypothetical protein F12K8.9 - Arabidopsis
thaliana|gi|6587849|gb|AAF18538.1|AC006551_24 Very
similar to retrotransposon reverse transcriptase
[Arabidopsis thaliana]
Length = 1231
Score = 114 bits (285), Expect = 4e-24
Identities = 74/212 (34%), Positives = 110/212 (50%), Gaps = 45/212 (21%)
Frame = +1
Query: 925 KGTRFAISKTVAKIKEDANQWFFAQVLE----------NQDLVNEQAVHISVKVL----- 1059
+G RF + +T+ K+++D WF AQV+E +Q + + + V V+ L
Sbjct: 1014 EGKRFTVLETILKVRKDVEDWFAAQVVEKERRAEVGQSDQQVFSPRNVSPVVRWLPPPTD 1073
Query: 1060 -------------------RGFLRDEHGKVLIHARRSFASVHSKLDATFLCWQWAMESMK 1182
LR++ G VL+H+RR+F+++ S L+A FL WA+ESM
Sbjct: 1074 WVKCNVGLSWSRRNRLAGVAWVLRNDRGNVLMHSRRAFSNISSFLEAQFLSIVWAVESMV 1133
Query: 1183 SLRVDKIIFASEDNDLIGAVTRLPSWPSYKFQIHFLLGEL-----------IRSSNLGAH 1329
S V++++F E L+G + R +WPS++FQ +L L SSN GA+
Sbjct: 1134 SHHVNRVVFGVEAAVLVGVINRPQAWPSFRFQSSEILLALNGIAVWKVVLESVSSNRGAN 1193
Query: 1330 LIAKSVTMEDRRQSYVATGFPFWLKHLFEKER 1425
LIA+SVT E R QSYVA FP WL +F ER
Sbjct: 1194 LIAQSVTKECRLQSYVAVSFPAWLLGVFRDER 1225
>ref|NP_179259.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g16680.1 [Arabidopsis
thaliana]|gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis
thaliana|gi|4581111|gb|AAD24601.1| putative non-LTR
retroelement reverse transcriptase [Arabidopsis thaliana]
Length = 1319
Score = 103 bits (256), Expect = 9e-21
Identities = 75/202 (37%), Positives = 100/202 (49%), Gaps = 31/202 (15%)
Frame = +1
Query: 913 KVINKGTRFAISKTVAKIKEDANQWFFAQVLE-----------NQDLVNEQAVHISV--- 1050
K + +GT S+ VAK E+ N W AQ N E +I V
Sbjct: 1113 KTLFQGTGLTSSEIVAKAYEECNLWINAQEKSSGGVSPSEHKWNPPPAGELKCNIGVAWS 1172
Query: 1051 --KVLRGF---LRDEHGKVLIHARRSFASVHSKLDATFLCWQWAMESMKSLRVDKIIFAS 1215
K L G LRD G+VL+H+RRS++ V+S DA W WA+ESM DK+ FA+
Sbjct: 1173 RQKQLAGVSWVLRDSMGQVLLHSRRSYSQVYSLFDAKIKSWDWALESMDHFHFDKVTFAA 1232
Query: 1216 EDNDLIGAVTRLPSWP----------SYKFQIH--FLLGELIRSSNLGAHLIAKSVTMED 1359
+D+I A+ + WP S+ I F++ E + +N GA IAKSV
Sbjct: 1233 TSHDIIKALHKPNEWPMLIGHIAEFLSFTKDISDWFMMMESTQCNN-GAAEIAKSVITGM 1291
Query: 1360 RRQSYVATGFPFWLKHLFEKER 1425
R QSYVA FP WL+ LFE+ER
Sbjct: 1292 RWQSYVACSFPHWLRSLFEEER 1313
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 127
effective length of database: 259,129,699
effective search space used: 90954524349
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)