BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU227148.r
(437 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171626.1| hypothetical protein; protein id: At1g0118... 120 2e-52
gb|AAF22682.1|AF098225_1 immunoglobulin heavy chain VDJ reg... 32 2.2
ref|NP_648627.1| CG11274-PA [Drosophila melanogaster]|gi|72... 31 2.9
ref|NP_102731.1| unknown protein [Mesorhizobium loti]|gi|14... 31 3.8
gb|ZP_00028603.1| hypothetical protein [Burkholderia fungorum] 30 5.0
>ref|NP_171626.1| hypothetical protein; protein id: At1g01180.1 [Arabidopsis
thaliana]|gi|25406717|pir||A86142 protein T25K16.17
[imported] - Arabidopsis
thaliana|gi|6715637|gb|AAF26464.1|AC007323_5 T25K16.17
[Arabidopsis thaliana]
Length = 478
Score = 120 bits (302), Expect(2) = 2e-52
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = -1
Query: 434 LCTRFMQNVVISDFSGSILPVPFSTGSALEKLCEWGVTADLVEIDPGHDFNSAWADINRA 255
L +FMQNVVISDFSGSILPVPFSTGSALEKLCEWGVTADLVEID GHDFNSAWADINRA
Sbjct: 194 LMYQFMQNVVISDFSGSILPVPFSTGSALEKLCEWGVTADLVEIDAGHDFNSAWADINRA 253
Query: 254 VRYSDP 237
VR P
Sbjct: 254 VRILRP 259
Score = 105 bits (262), Expect(2) = 2e-52
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = -3
Query: 249 ILRPGGVIFGHDYFTAPDNRGVRRAVNLFAEINRLKVKTDGQHWVIDSVKV 97
ILRPGGVIFGHDYFTA DNRGVRRAVNLFAEINRLKVKTDGQHWVIDSVKV
Sbjct: 256 ILRPGGVIFGHDYFTAADNRGVRRAVNLFAEINRLKVKTDGQHWVIDSVKV 306
>gb|AAF22682.1|AF098225_1 immunoglobulin heavy chain VDJ region [Oryctolagus cuniculus]
Length = 145
Score = 31.6 bits (70), Expect = 2.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 29 YYTFSYYLYIEFFHSLWEKGNQVTLT 106
YYT+SY Y F+ +LW G VT++
Sbjct: 120 YYTYSYATYAYFYFNLWGPGTLVTVS 145
>ref|NP_648627.1| CG11274-PA [Drosophila melanogaster]|gi|7294506|gb|AAF49848.1|
CG11274-PA [Drosophila melanogaster]
Length = 954
Score = 31.2 bits (69), Expect = 2.9
Identities = 24/73 (32%), Positives = 33/73 (44%), Gaps = 9/73 (12%)
Frame = +1
Query: 199 RRREIIVTKYNTAGSEYRTARFISAHAELK---------S*PGSISTRSAVTPHSHSFSK 351
R R + N GS AR +A+A K + PGS RS+ P S S S+
Sbjct: 169 RSRSRSMKPANNNGSVPSAAREAAANAAAKIRKRGSSSAARPGSRERRSSRRPRSRSRSR 228
Query: 352 AEPVEKGTGNIEP 390
+ K TG++EP
Sbjct: 229 SRTAGKKTGSVEP 241
>ref|NP_102731.1| unknown protein [Mesorhizobium loti]|gi|14021906|dbj|BAB48517.1|
unknown protein [Mesorhizobium loti]
Length = 233
Score = 30.8 bits (68), Expect = 3.8
Identities = 20/53 (37%), Positives = 25/53 (46%), Gaps = 5/53 (9%)
Frame = -1
Query: 380 LPVPFSTG-----SALEKLCEWGVTADLVEIDPGHDFNSAWADINRAVRYSDP 237
LPV FS+ + LE G T DLV +DP H + + DI A R P
Sbjct: 62 LPVDFSSADDDIAACLEDTRLKGQTFDLVFVDPHHTYECSARDIREAFRMVSP 114
>gb|ZP_00028603.1| hypothetical protein [Burkholderia fungorum]
Length = 328
Score = 30.4 bits (67), Expect = 5.0
Identities = 17/44 (38%), Positives = 23/44 (51%)
Frame = +3
Query: 282 IKIVTRVYLHQVRRHSPLTQLLQSRTGRERNRQYRTGKIRDNHV 413
+ IVTR L VR+ LT+LL+ GR R + G + HV
Sbjct: 223 VGIVTRADLGGVRQPGALTRLLRRLPGRRRANEPTVGTLMTTHV 266
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 121
effective length of database: 267,163,975
effective search space used: 6411935400
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)