BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.sd.11.C1
         (1004 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_563619.1|  expressed protein; protein id: At1g01160.1...   228   1e-58
pir||T01561  hypothetical protein A_TM018A10.22 - Arabidopsi...   162   6e-39
ref|NP_567194.1|  coded for by A. thaliana cDNA T45454; prot...   162   6e-39
ref|NP_198216.1|  putative protein; protein id: At5g28640.1 ...    69   8e-11
gb|AAM52881.1|  putative transcription co-activator [Arabido...    69   8e-11
>ref|NP_563619.1| expressed protein; protein id: At1g01160.1, supported by cDNA:
           gi_15294231, supported by cDNA: gi_20857111 [Arabidopsis
           thaliana]|gi|25406716|pir||H86141 protein T25K16.15
           [imported] - Arabidopsis
           thaliana|gi|6715636|gb|AAF26463.1|AC007323_4 T25K16.15
           [Arabidopsis
           thaliana]|gi|15294232|gb|AAK95293.1|AF410307_1
           At1g01160/F6F3_1 [Arabidopsis
           thaliana]|gi|20857112|gb|AAM26700.1| At1g01160/F6F3_1
           [Arabidopsis thaliana]|gi|21539892|gb|AAM52882.1|
           putative transcription co-activator [Arabidopsis
           thaliana]
          Length = 195

 Score =  228 bits (581), Expect = 1e-58
 Identities = 116/156 (74%), Positives = 116/156 (74%)
 Frame = +1

Query: 247 SIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLXXXXXXX 426
           SIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYL       
Sbjct: 15  SIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 74

Query: 427 XXXXXXXXXXXXXXXXQMATPHSGMQPPSYFMQHPQASPAGIFAPRGPLQFGSPLXXXXX 606
                           QMATPHSGMQPPSYFMQHPQASPAGIFAPRGPLQFGSPL     
Sbjct: 75  PPPPTPGPSPSTAVAAQMATPHSGMQPPSYFMQHPQASPAGIFAPRGPLQFGSPLQFQDP 134

Query: 607 XXXXXXXXXXXXGHMGIRPMGMTNNGMQHAMQQPET 714
                       GHMGIRPMGMTNNGMQHAMQQPET
Sbjct: 135 QQQQQIHQQAMQGHMGIRPMGMTNNGMQHAMQQPET 170
>pir||T01561 hypothetical protein A_TM018A10.22 - Arabidopsis
           thaliana|gi|2252866|gb|AAB62864.1| contains region of
           similarity to SYT [Arabidopsis
           thaliana]|gi|7267424|emb|CAB80894.1| contains region of
           similarity to SYT, coded for by A. thaliana cDNA
           T45454~similarity to~contains EST gb:AI993161.1, T45454,
           AA394509 [Arabidopsis thaliana]
          Length = 230

 Score =  162 bits (411), Expect = 6e-39
 Identities = 95/164 (57%), Positives = 98/164 (58%), Gaps = 8/164 (4%)
 Frame = +1

Query: 247 SIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLXXXXXXX 426
           S PP NNITTEQIQKYLDENKKLIMAI+ENQNLGKLAECAQYQALLQKNLMYL       
Sbjct: 14  SFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 73

Query: 427 XXXXXXXXXXXXXXXXQMATPHSGMQ-PPSYFMQHPQA------SPAGIFAPRGPLQFGS 585
                            MA   S MQ PPSYFMQ  QA       P GIF PRGPLQFGS
Sbjct: 74  PQPPAATLTSGAMTPQAMAPNPSSMQPPPSYFMQQHQAVGMAQQIPPGIFPPRGPLQFGS 133

Query: 586 PLXXXXXXXXXXXXXXXXXGHMGIRPMGM-TNNGMQHAMQQPET 714
           P                  GHMGIRPMG+  NNG+QH M   ET
Sbjct: 134 P--HQFLDPQQQLHQQAMQGHMGIRPMGLNNNNGLQHQMHHHET 175
>ref|NP_567194.1| coded for by A. thaliana cDNA T45454; protein id: At4g00850.1,
           supported by cDNA: gi_14190376, supported by cDNA:
           gi_15450536 [Arabidopsis
           thaliana]|gi|14190377|gb|AAK55669.1|AF378866_1
           AT4g00850/A_TM018A10_22 [Arabidopsis
           thaliana]|gi|15450537|gb|AAK96446.1|
           AT4g00850/A_TM018A10_22 [Arabidopsis
           thaliana]|gi|21539894|gb|AAM52883.1| putative
           transcription co-activator [Arabidopsis thaliana]
          Length = 223

 Score =  162 bits (411), Expect = 6e-39
 Identities = 95/164 (57%), Positives = 98/164 (58%), Gaps = 8/164 (4%)
 Frame = +1

Query: 247 SIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLXXXXXXX 426
           S PP NNITTEQIQKYLDENKKLIMAI+ENQNLGKLAECAQYQALLQKNLMYL       
Sbjct: 14  SFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 73

Query: 427 XXXXXXXXXXXXXXXXQMATPHSGMQ-PPSYFMQHPQA------SPAGIFAPRGPLQFGS 585
                            MA   S MQ PPSYFMQ  QA       P GIF PRGPLQFGS
Sbjct: 74  PQPPAATLTSGAMTPQAMAPNPSSMQPPPSYFMQQHQAVGMAQQIPPGIFPPRGPLQFGS 133

Query: 586 PLXXXXXXXXXXXXXXXXXGHMGIRPMGM-TNNGMQHAMQQPET 714
           P                  GHMGIRPMG+  NNG+QH M   ET
Sbjct: 134 P--HQFLDPQQQLHQQAMQGHMGIRPMGLNNNNGLQHQMHHHET 175
>ref|NP_198216.1| putative protein; protein id: At5g28640.1 [Arabidopsis thaliana]
          Length = 199

 Score = 69.3 bits (168), Expect = 8e-11
 Identities = 31/48 (64%), Positives = 42/48 (86%)
 Frame = +1

Query: 262 NNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYL 405
           +N+T++ IQ+YLDENK LI+ I+E+QN GKL+ECA+ QA LQ+NLMYL
Sbjct: 7   SNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYL 54
>gb|AAM52881.1| putative transcription co-activator [Arabidopsis
           thaliana]|gi|27754436|gb|AAO22666.1| unknown protein
           [Arabidopsis thaliana]|gi|28394097|gb|AAO42456.1|
           unknown protein [Arabidopsis thaliana]
          Length = 210

 Score = 69.3 bits (168), Expect = 8e-11
 Identities = 31/48 (64%), Positives = 42/48 (86%)
 Frame = +1

Query: 262 NNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYL 405
           +N+T++ IQ+YLDENK LI+ I+E+QN GKL+ECA+ QA LQ+NLMYL
Sbjct: 18  SNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYL 65
  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 123
effective length of database: 264,485,883
effective search space used: 55806521313
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results