BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.11.C1
(1004 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563619.1| expressed protein; protein id: At1g01160.1... 228 1e-58
pir||T01561 hypothetical protein A_TM018A10.22 - Arabidopsi... 162 6e-39
ref|NP_567194.1| coded for by A. thaliana cDNA T45454; prot... 162 6e-39
ref|NP_198216.1| putative protein; protein id: At5g28640.1 ... 69 8e-11
gb|AAM52881.1| putative transcription co-activator [Arabido... 69 8e-11
>ref|NP_563619.1| expressed protein; protein id: At1g01160.1, supported by cDNA:
gi_15294231, supported by cDNA: gi_20857111 [Arabidopsis
thaliana]|gi|25406716|pir||H86141 protein T25K16.15
[imported] - Arabidopsis
thaliana|gi|6715636|gb|AAF26463.1|AC007323_4 T25K16.15
[Arabidopsis
thaliana]|gi|15294232|gb|AAK95293.1|AF410307_1
At1g01160/F6F3_1 [Arabidopsis
thaliana]|gi|20857112|gb|AAM26700.1| At1g01160/F6F3_1
[Arabidopsis thaliana]|gi|21539892|gb|AAM52882.1|
putative transcription co-activator [Arabidopsis
thaliana]
Length = 195
Score = 228 bits (581), Expect = 1e-58
Identities = 116/156 (74%), Positives = 116/156 (74%)
Frame = +1
Query: 247 SIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLXXXXXXX 426
SIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYL
Sbjct: 15 SIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 74
Query: 427 XXXXXXXXXXXXXXXXQMATPHSGMQPPSYFMQHPQASPAGIFAPRGPLQFGSPLXXXXX 606
QMATPHSGMQPPSYFMQHPQASPAGIFAPRGPLQFGSPL
Sbjct: 75 PPPPTPGPSPSTAVAAQMATPHSGMQPPSYFMQHPQASPAGIFAPRGPLQFGSPLQFQDP 134
Query: 607 XXXXXXXXXXXXGHMGIRPMGMTNNGMQHAMQQPET 714
GHMGIRPMGMTNNGMQHAMQQPET
Sbjct: 135 QQQQQIHQQAMQGHMGIRPMGMTNNGMQHAMQQPET 170
>pir||T01561 hypothetical protein A_TM018A10.22 - Arabidopsis
thaliana|gi|2252866|gb|AAB62864.1| contains region of
similarity to SYT [Arabidopsis
thaliana]|gi|7267424|emb|CAB80894.1| contains region of
similarity to SYT, coded for by A. thaliana cDNA
T45454~similarity to~contains EST gb:AI993161.1, T45454,
AA394509 [Arabidopsis thaliana]
Length = 230
Score = 162 bits (411), Expect = 6e-39
Identities = 95/164 (57%), Positives = 98/164 (58%), Gaps = 8/164 (4%)
Frame = +1
Query: 247 SIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLXXXXXXX 426
S PP NNITTEQIQKYLDENKKLIMAI+ENQNLGKLAECAQYQALLQKNLMYL
Sbjct: 14 SFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 73
Query: 427 XXXXXXXXXXXXXXXXQMATPHSGMQ-PPSYFMQHPQA------SPAGIFAPRGPLQFGS 585
MA S MQ PPSYFMQ QA P GIF PRGPLQFGS
Sbjct: 74 PQPPAATLTSGAMTPQAMAPNPSSMQPPPSYFMQQHQAVGMAQQIPPGIFPPRGPLQFGS 133
Query: 586 PLXXXXXXXXXXXXXXXXXGHMGIRPMGM-TNNGMQHAMQQPET 714
P GHMGIRPMG+ NNG+QH M ET
Sbjct: 134 P--HQFLDPQQQLHQQAMQGHMGIRPMGLNNNNGLQHQMHHHET 175
>ref|NP_567194.1| coded for by A. thaliana cDNA T45454; protein id: At4g00850.1,
supported by cDNA: gi_14190376, supported by cDNA:
gi_15450536 [Arabidopsis
thaliana]|gi|14190377|gb|AAK55669.1|AF378866_1
AT4g00850/A_TM018A10_22 [Arabidopsis
thaliana]|gi|15450537|gb|AAK96446.1|
AT4g00850/A_TM018A10_22 [Arabidopsis
thaliana]|gi|21539894|gb|AAM52883.1| putative
transcription co-activator [Arabidopsis thaliana]
Length = 223
Score = 162 bits (411), Expect = 6e-39
Identities = 95/164 (57%), Positives = 98/164 (58%), Gaps = 8/164 (4%)
Frame = +1
Query: 247 SIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLXXXXXXX 426
S PP NNITTEQIQKYLDENKKLIMAI+ENQNLGKLAECAQYQALLQKNLMYL
Sbjct: 14 SFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 73
Query: 427 XXXXXXXXXXXXXXXXQMATPHSGMQ-PPSYFMQHPQA------SPAGIFAPRGPLQFGS 585
MA S MQ PPSYFMQ QA P GIF PRGPLQFGS
Sbjct: 74 PQPPAATLTSGAMTPQAMAPNPSSMQPPPSYFMQQHQAVGMAQQIPPGIFPPRGPLQFGS 133
Query: 586 PLXXXXXXXXXXXXXXXXXGHMGIRPMGM-TNNGMQHAMQQPET 714
P GHMGIRPMG+ NNG+QH M ET
Sbjct: 134 P--HQFLDPQQQLHQQAMQGHMGIRPMGLNNNNGLQHQMHHHET 175
>ref|NP_198216.1| putative protein; protein id: At5g28640.1 [Arabidopsis thaliana]
Length = 199
Score = 69.3 bits (168), Expect = 8e-11
Identities = 31/48 (64%), Positives = 42/48 (86%)
Frame = +1
Query: 262 NNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYL 405
+N+T++ IQ+YLDENK LI+ I+E+QN GKL+ECA+ QA LQ+NLMYL
Sbjct: 7 SNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYL 54
>gb|AAM52881.1| putative transcription co-activator [Arabidopsis
thaliana]|gi|27754436|gb|AAO22666.1| unknown protein
[Arabidopsis thaliana]|gi|28394097|gb|AAO42456.1|
unknown protein [Arabidopsis thaliana]
Length = 210
Score = 69.3 bits (168), Expect = 8e-11
Identities = 31/48 (64%), Positives = 42/48 (86%)
Frame = +1
Query: 262 NNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYL 405
+N+T++ IQ+YLDENK LI+ I+E+QN GKL+ECA+ QA LQ+NLMYL
Sbjct: 18 SNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYL 65
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 123
effective length of database: 264,485,883
effective search space used: 55806521313
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)