BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV821553.f
         (364 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_563619.1|  expressed protein; protein id: At1g01160.1...    32   1.9  
ref|NP_220560.1|  ACRIFLAVIN RESISTANCE PROTEIN D (acrD) [Ri...    32   2.5  
ref|NP_779623.1|  conserved hypothetical protein [Xylella fa...    31   3.3  
ref|NP_359848.1|  acriflavin resistance protein D [Rickettsi...    31   4.3  
gb|EAA25724.1|  acriflavin resistance protein D [Rickettsia ...    31   4.3  
>ref|NP_563619.1| expressed protein; protein id: At1g01160.1, supported by cDNA:
           gi_15294231, supported by cDNA: gi_20857111 [Arabidopsis
           thaliana]|gi|25406716|pir||H86141 protein T25K16.15
           [imported] - Arabidopsis
           thaliana|gi|6715636|gb|AAF26463.1|AC007323_4 T25K16.15
           [Arabidopsis
           thaliana]|gi|15294232|gb|AAK95293.1|AF410307_1
           At1g01160/F6F3_1 [Arabidopsis
           thaliana]|gi|20857112|gb|AAM26700.1| At1g01160/F6F3_1
           [Arabidopsis thaliana]|gi|21539892|gb|AAM52882.1|
           putative transcription co-activator [Arabidopsis
           thaliana]
          Length = 195

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 251 SIPPANNXTTEQIQK 295
           SIPPANN TTEQIQK
Sbjct: 15  SIPPANNITTEQIQK 29
>ref|NP_220560.1| ACRIFLAVIN RESISTANCE PROTEIN D (acrD) [Rickettsia
           prowazekii]|gi|7448465|pir||F71727 acriflavin resistance
           protein D (acrD) RP170 - Rickettsia
           prowazekii|gi|3860736|emb|CAA14637.1| ACRIFLAVIN
           RESISTANCE PROTEIN D (acrD) [Rickettsia prowazekii]
          Length = 1008

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 10/24 (41%), Positives = 19/24 (78%)
 Frame = +1

Query: 109 ISCVWIGLGFVEGFLGKTKLGFSW 180
           ++ V++ +GF+EGF+GK  + F+W
Sbjct: 441 LAAVFVPIGFIEGFIGKLFIEFAW 464
>ref|NP_779623.1| conserved hypothetical protein [Xylella fastidiosa
           Temecula1]|gi|28057415|gb|AAO29272.1| conserved
           hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 90

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 165 FRLPQKTLDKTQTDPNAGNDCKLY 94
           F   Q TLD+  T  NAGNDC +Y
Sbjct: 7   FYFDQATLDRANTYRNAGNDCAMY 30
>ref|NP_359848.1| acriflavin resistance protein D [Rickettsia
           conorii]|gi|25318724|pir||C97726 acriflavin resistance
           protein D [imported] - Rickettsia conorii (strain Malish
           7)|gi|15619262|gb|AAL02749.1| acriflavin resistance
           protein D [Rickettsia conorii]
          Length = 1008

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 10/24 (41%), Positives = 19/24 (78%)
 Frame = +1

Query: 109 ISCVWIGLGFVEGFLGKTKLGFSW 180
           ++ V++ +GF+EGF+GK  + F+W
Sbjct: 441 LAAVFLPVGFIEGFIGKLFIEFAW 464
>gb|EAA25724.1| acriflavin resistance protein D [Rickettsia sibirica]
          Length = 990

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 10/24 (41%), Positives = 19/24 (78%)
 Frame = +1

Query: 109 ISCVWIGLGFVEGFLGKTKLGFSW 180
           ++ V++ +GF+EGF+GK  + F+W
Sbjct: 423 LAAVFLPVGFIEGFIGKLFIEFAW 446
  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 96
effective length of database: 300,640,125
effective search space used: 7215363000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results