BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.9.cl.993.Contig1
(940 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05478 peroxidase (EC 1.11.1.7) prxr1 - Arabidopsis th... 325 8e-88
ref|NP_567641.1| peroxidase, putative; protein id: At4g2196... 325 8e-88
emb|CAA66862.1| peroxidase ATP1a [Arabidopsis thaliana] 325 8e-88
pir||T10790 peroxidase (EC 1.11.1.7) - upland cotton|gi|167... 293 2e-78
pir||T06227 peroxidase (EC 1.11.1.7) 2, cationic - soybean|... 288 8e-77
>pir||T05478 peroxidase (EC 1.11.1.7) prxr1 - Arabidopsis
thaliana|gi|2894574|emb|CAA17163.1| peroxidase prxr1
[Arabidopsis thaliana]|gi|7269041|emb|CAB79151.1|
peroxidase prxr1 [Arabidopsis thaliana]
Length = 323
Score = 325 bits (832), Expect = 8e-88
Identities = 156/166 (93%), Positives = 159/166 (94%)
Frame = +1
Query: 1 YLPDHNESIYVVLDKYKSIGIDTPGLDALLGSHSVERTHCDQLAHR*YPEVDPYLNPDHV 180
YLPDHNESI VVL+K+KSIGIDTPGL ALLGSHSV RTHC +L HR YPEVDP LNPDHV
Sbjct: 158 YLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCVKLVHRLYPEVDPSLNPDHV 217
Query: 181 PHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPI 360
PHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPI
Sbjct: 218 PHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPI 277
Query: 361 VKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 498
VKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH
Sbjct: 278 VKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 323
>ref|NP_567641.1| peroxidase, putative; protein id: At4g21960.1, supported by cDNA:
20758., supported by cDNA: gi_13358206, supported by
cDNA: gi_15983806, supported by cDNA: gi_16226364,
supported by cDNA: gi_16604345, supported by cDNA:
gi_16648880 [Arabidopsis
thaliana]|gi|26397890|sp|Q9SB81|PE42_ARATH Peroxidase 42
precursor (Atperox P42) (PRXR1)
(ATP1a/ATP1b)|gi|1402904|emb|CAA66957.1| peroxidase
[Arabidopsis
thaliana]|gi|11762178|gb|AAG40367.1|AF325015_1 AT4g21960
[Arabidopsis thaliana]|gi|15983807|gb|AAL10500.1|
AT4g21960/T8O5_170 [Arabidopsis
thaliana]|gi|16226365|gb|AAL16147.1|AF428379_1
AT4g21960/T8O5_170 [Arabidopsis
thaliana]|gi|16604346|gb|AAL24179.1| AT4g21960/T8O5_170
[Arabidopsis thaliana]|gi|16648881|gb|AAL24292.1|
peroxidase prxr1 [Arabidopsis
thaliana]|gi|22135771|gb|AAM91042.1| AT4g21960/T8O5_170
[Arabidopsis thaliana]
Length = 330
Score = 325 bits (832), Expect = 8e-88
Identities = 156/166 (93%), Positives = 159/166 (94%)
Frame = +1
Query: 1 YLPDHNESIYVVLDKYKSIGIDTPGLDALLGSHSVERTHCDQLAHR*YPEVDPYLNPDHV 180
YLPDHNESI VVL+K+KSIGIDTPGL ALLGSHSV RTHC +L HR YPEVDP LNPDHV
Sbjct: 165 YLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCVKLVHRLYPEVDPSLNPDHV 224
Query: 181 PHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPI 360
PHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPI
Sbjct: 225 PHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPI 284
Query: 361 VKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 498
VKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH
Sbjct: 285 VKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330
>emb|CAA66862.1| peroxidase ATP1a [Arabidopsis thaliana]
Length = 330
Score = 325 bits (832), Expect = 8e-88
Identities = 156/166 (93%), Positives = 159/166 (94%)
Frame = +1
Query: 1 YLPDHNESIYVVLDKYKSIGIDTPGLDALLGSHSVERTHCDQLAHR*YPEVDPYLNPDHV 180
YLPDHNESI VVL+K+KSIGIDTPGL ALLGSHSV RTHC +L HR YPEVDP LNPDHV
Sbjct: 165 YLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCVKLVHRLYPEVDPSLNPDHV 224
Query: 181 PHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPI 360
PHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPI
Sbjct: 225 PHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPI 284
Query: 361 VKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 498
VKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH
Sbjct: 285 VKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330
>pir||T10790 peroxidase (EC 1.11.1.7) - upland cotton|gi|167367|gb|AAA99868.1|
peroxidase
Length = 332
Score = 293 bits (750), Expect = 2e-78
Identities = 138/166 (83%), Positives = 151/166 (90%)
Frame = +1
Query: 1 YLPDHNESIYVVLDKYKSIGIDTPGLDALLGSHSVERTHCDQLAHR*YPEVDPYLNPDHV 180
YLPDHNE+I VLD++ ++GIDTPG+ ALLG+HSV RTHC +L HR YPEVDP L+PDHV
Sbjct: 167 YLPDHNETISGVLDRFAAMGIDTPGVVALLGAHSVGRTHCVKLVHRLYPEVDPALSPDHV 226
Query: 181 PHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPI 360
PHMLHKCPD IPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLL+VDHQLA+DKRTRP
Sbjct: 227 PHMLHKCPDQIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLIVDHQLAYDKRTRPY 286
Query: 361 VKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 498
VKKMAK Q YFFKEF+RAI +LSENNPLTGSKGEIRKQCNLANK H
Sbjct: 287 VKKMAKSQDYFFKEFSRAITLLSENNPLTGSKGEIRKQCNLANKLH 332
>pir||T06227 peroxidase (EC 1.11.1.7) 2, cationic -
soybean|gi|3982596|gb|AAC83463.1| cationic peroxidase 2
[Glycine max]
Length = 331
Score = 288 bits (737), Expect = 8e-77
Identities = 133/166 (80%), Positives = 151/166 (90%)
Frame = +1
Query: 1 YLPDHNESIYVVLDKYKSIGIDTPGLDALLGSHSVERTHCDQLAHR*YPEVDPYLNPDHV 180
+LPDHNESI VLDK+ ++GIDTPG+ ALLG+HSV RTHC +L HR YPE+DP LNPDHV
Sbjct: 163 FLPDHNESISAVLDKFGAMGIDTPGVVALLGAHSVGRTHCVKLVHRLYPEIDPALNPDHV 222
Query: 181 PHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPI 360
PH+L KCPD+IPDPKAVQYVRNDRGTPM+LDNNYYRNILDNKGLL+VDHQLA+DKRT+P
Sbjct: 223 PHILKKCPDAIPDPKAVQYVRNDRGTPMILDNNYYRNILDNKGLLIVDHQLANDKRTKPY 282
Query: 361 VKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 498
VKKMAK Q YFFKEF+RAI +LSENNPLTG+KGEIRKQCN ANK+H
Sbjct: 283 VKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKQCNAANKHH 328
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 123
effective length of database: 264,485,883
effective search space used: 49987831887
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)