BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.6.cl.698.Contig1
(884 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD58726.1| phosphoenolpyruvate carboxylase [Arabidopsi... 446 e-124
pir||T08138 phosphoenolpyruvate carboxylase (EC 4.1.1.31) P... 443 e-123
pir||T09846 phosphoenolpyruvate carboxylase (EC 4.1.1.31) 1... 398 e-110
pir||H84855 phosphoenolpyruvate carboxylase [imported] - Ar... 374 e-109
emb|CAC84957.1| phosphoenolpyruvate carboxylase, isoform 1 ... 391 e-108
>emb|CAD58726.1| phosphoenolpyruvate carboxylase [Arabidopsis thaliana]
Length = 963
Score = 446 bits (1146), Expect = e-124
Identities = 220/221 (99%), Positives = 220/221 (99%)
Frame = +2
Query: 2 EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGGAFKRVIQKDSKNL 181
EYGRMNIGSRPSKRKPSGGIESLRAIP IFAWTQTRFHLPVWLGFGGAFKRVIQKDSKNL
Sbjct: 743 EYGRMNIGSRPSKRKPSGGIESLRAIPRIFAWTQTRFHLPVWLGFGGAFKRVIQKDSKNL 802
Query: 182 NMLKEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEELQPFGEQLRVNYQETRR 361
NMLKEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEELQPFGEQLRVNYQETRR
Sbjct: 803 NMLKEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEELQPFGEQLRVNYQETRR 862
Query: 362 LLLQVAGHKDILEGDPYLRQRLQLRDPYITTLNVCQAYTLKQIRDPSFHVKVRPHLSKDY 541
LLLQVAGHKDILEGDPYLRQRLQLRDPYITTLNVCQAYTLKQIRDPSFHVKVRPHLSKDY
Sbjct: 863 LLLQVAGHKDILEGDPYLRQRLQLRDPYITTLNVCQAYTLKQIRDPSFHVKVRPHLSKDY 922
Query: 542 MESSPAAELVKLNPKSEYAPGLEDTVILTMKGIAAGMQNTG 664
MESSPAAELVKLNPKSEYAPGLEDTVILTMKGIAAGMQNTG
Sbjct: 923 MESSPAAELVKLNPKSEYAPGLEDTVILTMKGIAAGMQNTG 963
>pir||T08138 phosphoenolpyruvate carboxylase (EC 4.1.1.31) PE3-PEPCase -
rape|gi|507808|dbj|BAA03094.1| phosphoenolpyruvate
carboxylase [Brassica napus]|gi|743641|prf||2013218A
phosphoenolpyruvate carboxylase
Length = 964
Score = 443 bits (1139), Expect = e-123
Identities = 219/222 (98%), Positives = 220/222 (98%), Gaps = 1/222 (0%)
Frame = +2
Query: 2 EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGGAFKRVIQKDSKNL 181
EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFG AFKRVIQKD+KNL
Sbjct: 743 EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGSAFKRVIQKDAKNL 802
Query: 182 NMLKEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEELQPFGEQLRVNYQETRR 361
NMLKEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEELQPFGEQLRVNYQETRR
Sbjct: 803 NMLKEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEELQPFGEQLRVNYQETRR 862
Query: 362 LLLQVAGHKDILEGDPYLRQRLQLRDPYITTLNVCQAYTLKQIRDPSFHVKVRPHLSKDY 541
LLLQVAGHKDILEGDPYLRQRLQLRDPYITTLNVCQAYTLKQIRDPSFHVKVRPHLSKDY
Sbjct: 863 LLLQVAGHKDILEGDPYLRQRLQLRDPYITTLNVCQAYTLKQIRDPSFHVKVRPHLSKDY 922
Query: 542 MESS-PAAELVKLNPKSEYAPGLEDTVILTMKGIAAGMQNTG 664
MESS PAAELVKLNPKSEYAPGLEDTVILTMKGIAAGMQNTG
Sbjct: 923 MESSKPAAELVKLNPKSEYAPGLEDTVILTMKGIAAGMQNTG 964
>pir||T09846 phosphoenolpyruvate carboxylase (EC 4.1.1.31) 1 - upland
cotton|gi|2266947|gb|AAB80714.1| phosphoenolpyruvate
carboxylase 1 [Gossypium hirsutum]
Length = 965
Score = 398 bits (1023), Expect = e-110
Identities = 191/222 (86%), Positives = 211/222 (95%), Gaps = 1/222 (0%)
Frame = +2
Query: 2 EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGGAFKRVIQKDSKNL 181
EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFG AFK VIQKD KNL
Sbjct: 744 EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIKNL 803
Query: 182 NMLKEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEELQPFGEQLRVNYQETRR 361
+ML+EM+NQWPFFRVT+DL+EMVFAKGDPGIAALYD+LLVS+EL PFGE LR NY++T+R
Sbjct: 804 HMLQEMHNQWPFFRVTMDLIEMVFAKGDPGIAALYDKLLVSKELWPFGENLRANYEDTKR 863
Query: 362 LLLQVAGHKDILEGDPYLRQRLQLRDPYITTLNVCQAYTLKQIRDPSFHVKVRPHLSKDY 541
L+LQVAGH+D+LEGDPYL+QRL+LRD YITTLNVCQAYTLK+IRDP +HVKVRPHLS++Y
Sbjct: 864 LVLQVAGHRDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKRIRDPDYHVKVRPHLSREY 923
Query: 542 MESS-PAAELVKLNPKSEYAPGLEDTVILTMKGIAAGMQNTG 664
MESS AAELVKLNP SEYAPGLEDT+ILTMKGIAAGMQNTG
Sbjct: 924 MESSKAAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 965
>pir||H84855 phosphoenolpyruvate carboxylase [imported] - Arabidopsis
thaliana|gi|4559332|gb|AAD22994.1| phosphoenolpyruvate
carboxylase [Arabidopsis thaliana]
Length = 941
Score = 374 bits (959), Expect(2) = e-109
Identities = 184/184 (100%), Positives = 184/184 (100%)
Frame = +2
Query: 113 HLPVWLGFGGAFKRVIQKDSKNLNMLKEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDR 292
HLPVWLGFGGAFKRVIQKDSKNLNMLKEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDR
Sbjct: 758 HLPVWLGFGGAFKRVIQKDSKNLNMLKEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDR 817
Query: 293 LLVSEELQPFGEQLRVNYQETRRLLLQVAGHKDILEGDPYLRQRLQLRDPYITTLNVCQA 472
LLVSEELQPFGEQLRVNYQETRRLLLQVAGHKDILEGDPYLRQRLQLRDPYITTLNVCQA
Sbjct: 818 LLVSEELQPFGEQLRVNYQETRRLLLQVAGHKDILEGDPYLRQRLQLRDPYITTLNVCQA 877
Query: 473 YTLKQIRDPSFHVKVRPHLSKDYMESSPAAELVKLNPKSEYAPGLEDTVILTMKGIAAGM 652
YTLKQIRDPSFHVKVRPHLSKDYMESSPAAELVKLNPKSEYAPGLEDTVILTMKGIAAGM
Sbjct: 878 YTLKQIRDPSFHVKVRPHLSKDYMESSPAAELVKLNPKSEYAPGLEDTVILTMKGIAAGM 937
Query: 653 QNTG 664
QNTG
Sbjct: 938 QNTG 941
Score = 43.5 bits (101), Expect(2) = e-109
Identities = 21/26 (80%), Positives = 21/26 (80%)
Frame = +1
Query: 58 NRVAACNPVDLCVDSDEVSLTRVAWL 135
NRVAACNPVDLCVDSDEV L WL
Sbjct: 740 NRVAACNPVDLCVDSDEVHLP--VWL 763
>emb|CAC84957.1| phosphoenolpyruvate carboxylase, isoform 1 [Euphorbia tirucalli]
Length = 364
Score = 391 bits (1004), Expect = e-108
Identities = 188/216 (87%), Positives = 205/216 (94%), Gaps = 1/216 (0%)
Frame = +2
Query: 2 EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGGAFKRVIQKDSKNL 181
EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFG AFK +I+KD KNL
Sbjct: 149 EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHIIEKDVKNL 208
Query: 182 NMLKEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEELQPFGEQLRVNYQETRR 361
+ML++MYNQWPFFRVTIDLVEMVFAKGDPGIAALYD+LLV EEL+PFGEQLR NY+ET+
Sbjct: 209 HMLQDMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVPEELRPFGEQLRHNYEETKH 268
Query: 362 LLLQVAGHKDILEGDPYLRQRLQLRDPYITTLNVCQAYTLKQIRDPSFHVKVRPHLSKDY 541
LLLQ+AGHKD+LEGDPYL+QRL+LRD YITTLNVCQAYTLKQIRDP +HV VRPHLSK+Y
Sbjct: 269 LLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKQIRDPDYHVTVRPHLSKEY 328
Query: 542 MESS-PAAELVKLNPKSEYAPGLEDTVILTMKGIAA 646
+ESS PAAELVKLNP SEYAPGLEDT+ILTMKGIAA
Sbjct: 329 IESSKPAAELVKLNPTSEYAPGLEDTLILTMKGIAA 364
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 122
effective length of database: 265,824,929
effective search space used: 45721887788
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)