BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.5.cl.573.Contig6
(844 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176880.1| ribulose-bisphosphate carboxylase small un... 353 1e-96
pir||RKMUA1 ribulose-bisphosphate carboxylase (EC 4.1.1.39)... 353 2e-96
gb|AAG40356.1|AF325004_1 At1g67090 [Arabidopsis thaliana] 350 1e-95
emb|CAA31948.1| ribulose bisphosphate carboxylase [Arabidop... 348 5e-95
ref|NP_198659.1| ribulose bisphosphate carboxylase small ch... 336 2e-91
>ref|NP_176880.1| ribulose-bisphosphate carboxylase small unit, putative; protein id:
At1g67090.1, supported by cDNA: gi_11762169, supported
by cDNA: gi_13358196, supported by cDNA: gi_15294199,
supported by cDNA: gi_15451001, supported by cDNA:
gi_15809841, supported by cDNA: gi_16604425, supported
by cDNA: gi_16649140, supported by cDNA: gi_17065071,
supported by cDNA: gi_17065269, supported by cDNA:
gi_17473627, supported by cDNA: gi_20260063, supported
by cDNA: gi_20260079, supported by cDNA: gi_20453286
[Arabidopsis t>|gi|27735223|sp|P10795|RBS1_ARATH
Ribulose bisphosphate carboxylase small chain 1A,
chloroplast precursor (RuBisCO small subunit
1A)|gi|25291028|pir||G96694 hypothetical protein F5A8.1
[imported] - Arabidopsis
thaliana|gi|4204274|gb|AAD10655.1| ribulose bisphosphate
carboxylase, small subunit [Arabidopsis
thaliana]|gi|11762170|gb|AAG40363.1|AF325011_1 000C10C11
[Arabidopsis
thaliana]|gi|15294200|gb|AAK95277.1|AF410291_1
F1O19.10/F1O19.10 [Arabidopsis
thaliana]|gi|15451002|gb|AAK96772.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|15809842|gb|AAL06849.1| At1g67090/F1O19.10
[Arabidopsis thaliana]|gi|16604426|gb|AAL24219.1|
At1g67090/F1O19.10 [Arabidopsis
thaliana]|gi|16649141|gb|AAL24422.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|17065072|gb|AAL32690.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|17065270|gb|AAL32789.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|17473628|gb|AAL38277.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|20260064|gb|AAM13379.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|20260080|gb|AAM13387.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|20453287|gb|AAM19882.1| At1g67090/F1O19.10
[Arabidopsis thaliana]|gi|23198308|gb|AAN15681.1|
ribulose bisphosphate carboxylase, small subunit
[Arabidopsis thaliana]|gi|25083492|gb|AAN72087.1|
ribulose bisphosphate carboxylase, small subunit
[Arabidopsis thaliana]
Length = 180
Score = 353 bits (907), Expect = 1e-96
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +3
Query: 48 PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLP 227
PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLP
Sbjct: 15 PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLP 74
Query: 228 DLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTD 407
DLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTD
Sbjct: 75 DLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTD 134
Query: 408 SAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSFTG 545
SAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSFTG
Sbjct: 135 SAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSFTG 180
>pir||RKMUA1 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain A1
precursor - Arabidopsis thaliana
Length = 180
Score = 353 bits (906), Expect = 2e-96
Identities = 165/166 (99%), Positives = 166/166 (99%)
Frame = +3
Query: 48 PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLP 227
PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLP
Sbjct: 15 PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLP 74
Query: 228 DLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTD 407
DLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTD
Sbjct: 75 DLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTD 134
Query: 408 SAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSFTG 545
SAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISF+AYKPPSFTG
Sbjct: 135 SAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFVAYKPPSFTG 180
>gb|AAG40356.1|AF325004_1 At1g67090 [Arabidopsis thaliana]
Length = 180
Score = 350 bits (899), Expect = 1e-95
Identities = 165/166 (99%), Positives = 165/166 (99%)
Frame = +3
Query: 48 PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLP 227
PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLP
Sbjct: 15 PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLP 74
Query: 228 DLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTD 407
DLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSP YYDGRYWTMWKLPLFGCTD
Sbjct: 75 DLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPRYYDGRYWTMWKLPLFGCTD 134
Query: 408 SAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSFTG 545
SAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSFTG
Sbjct: 135 SAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSFTG 180
>emb|CAA31948.1| ribulose bisphosphate carboxylase [Arabidopsis thaliana]
Length = 182
Score = 348 bits (893), Expect = 5e-95
Identities = 165/168 (98%), Positives = 166/168 (98%), Gaps = 2/168 (1%)
Frame = +3
Query: 48 PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQ--VWPPIGKKKFETLSY 221
PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQ VWPPIGKKKFETLSY
Sbjct: 15 PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQMQVWPPIGKKKFETLSY 74
Query: 222 LPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGC 401
LPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGC
Sbjct: 75 LPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGC 134
Query: 402 TDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSFTG 545
TDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISF+AYKPPSFTG
Sbjct: 135 TDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFVAYKPPSFTG 182
>ref|NP_198659.1| ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO
small subunit 1b) (sp|P10796); protein id: At5g38430.1,
supported by cDNA: gi_15294183 [Arabidopsis
thaliana]|gi|132090|sp|P10796|RBS2_ARATH Ribulose
bisphosphate carboxylase small chain 1B, chloroplast
precursor (RuBisCO small subunit
1B)|gi|68062|pir||RKMUB1 ribulose-bisphosphate
carboxylase (EC 4.1.1.39) small chain B1 precursor -
Arabidopsis thaliana|gi|16193|emb|CAA32700.1| ribulose
bisphosphate carboxylase [Arabidopsis
thaliana]|gi|9758821|dbj|BAB09355.1| ribulose
bisphosphate carboxylase small chain 1b precursor
(RuBisCO small subunit 1b) [Arabidopsis
thaliana]|gi|15294184|gb|AAK95269.1|AF410283_1
F1O19.10/F1O19.10 [Arabidopsis
thaliana]|gi|23505787|gb|AAN28753.1| At5g38430/F1O19.10
[Arabidopsis thaliana]
Length = 181
Score = 336 bits (862), Expect = 2e-91
Identities = 156/165 (94%), Positives = 161/165 (97%)
Frame = +3
Query: 48 PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLP 227
PAQATMVAPF GLKSSA+FP TRKANNDITSITSNGGRV+CM+VWPPIGKKKFETLSYLP
Sbjct: 15 PAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLP 74
Query: 228 DLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTD 407
DLTD ELAKEVDYL+RNKWIPCVEFELEHGFVYREHGN+PGYYDGRYWTMWKLPLFGCTD
Sbjct: 75 DLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTD 134
Query: 408 SAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSFT 542
SAQVLKEVEECKKEYP AFIRIIGFDNTRQVQCISFIAYKPPSFT
Sbjct: 135 SAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 121
effective length of database: 267,163,975
effective search space used: 42479072025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)