BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.5.cl.520.Contig1
(1470 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194930.1| putative protein; protein id: At4g32020.1,... 274 2e-72
gb|AAK60298.1|AF385706_1 AT4g32020/F10N7_170 [Arabidopsis t... 272 1e-71
ref|NP_180097.1| unknown protein; protein id: At2g25250.1, ... 90 1e-16
gb|AAO24534.1| At2g25250 [Arabidopsis thaliana] 50 9e-05
ref|NP_192113.1| hypothetical protein; protein id: At4g0204... 45 0.003
>ref|NP_194930.1| putative protein; protein id: At4g32020.1, supported by cDNA:
gi_19548034 [Arabidopsis
thaliana]|gi|7485365|pir||T04643 hypothetical protein
F10N7.170 - Arabidopsis
thaliana|gi|2827634|emb|CAA16587.1| putative protein
[Arabidopsis thaliana]|gi|7270106|emb|CAB79920.1|
putative protein [Arabidopsis
thaliana]|gi|16974548|gb|AAL31190.1| AT4g32020/F10N7_170
[Arabidopsis thaliana]|gi|21928043|gb|AAM78050.1|
AT4g32020/F10N7_170 [Arabidopsis thaliana]
Length = 181
Score = 274 bits (701), Expect = 2e-72
Identities = 140/170 (82%), Positives = 140/170 (82%)
Frame = +3
Query: 96 MGVAVLNPQDCLKDPFSHMKQHRNPSACPNRQKKTVSNNRTXXXXXXXXXXXXXXXXXXX 275
MGVAVLNPQDCLKDPFSHMKQHRNPSACPNRQKKTVSNNRT
Sbjct: 1 MGVAVLNPQDCLKDPFSHMKQHRNPSACPNRQKKTVSNNRTRRSPPRSQSSRSSSPPVAP 60
Query: 276 XXXXXXXXXXXFVPKGTLKKSLSNTVAVSQVRILKRGEEIPKETSDLVVEMSDLGSTRRI 455
FVPKGTLKKSLSNTVAVSQVRILKRGEEIPKETSDLVVEMSDLGSTRRI
Sbjct: 61 PLPPPRAAVSAFVPKGTLKKSLSNTVAVSQVRILKRGEEIPKETSDLVVEMSDLGSTRRI 120
Query: 456 GPDPGLIPGQIRLSGRKSKSAPFYAGPVTMTSPPPSDVPLPAFFTKKATN 605
GPDPGLIPGQIRLSGRKSKSAPFYAGPVTMTSPPPSDVPLPAFFTKKATN
Sbjct: 121 GPDPGLIPGQIRLSGRKSKSAPFYAGPVTMTSPPPSDVPLPAFFTKKATN 170
>gb|AAK60298.1|AF385706_1 AT4g32020/F10N7_170 [Arabidopsis
thaliana]|gi|19548035|gb|AAL87381.1| AT4g32020/F10N7_170
[Arabidopsis thaliana]
Length = 181
Score = 272 bits (695), Expect = 1e-71
Identities = 139/170 (81%), Positives = 139/170 (81%)
Frame = +3
Query: 96 MGVAVLNPQDCLKDPFSHMKQHRNPSACPNRQKKTVSNNRTXXXXXXXXXXXXXXXXXXX 275
MGVAVLNPQDCLKDPFSHMKQHRNPSACPNRQKKTVSNNRT
Sbjct: 1 MGVAVLNPQDCLKDPFSHMKQHRNPSACPNRQKKTVSNNRTRRSPPRSQSSRSSSPPVAP 60
Query: 276 XXXXXXXXXXXFVPKGTLKKSLSNTVAVSQVRILKRGEEIPKETSDLVVEMSDLGSTRRI 455
FVPKGTLKKSLSNTVAVSQVRILKRGEEIPKETSDLVVEMSDLGSTRRI
Sbjct: 61 PLPPPRAAVSAFVPKGTLKKSLSNTVAVSQVRILKRGEEIPKETSDLVVEMSDLGSTRRI 120
Query: 456 GPDPGLIPGQIRLSGRKSKSAPFYAGPVTMTSPPPSDVPLPAFFTKKATN 605
GPDPGLIPGQI LSGRKSKSAPFYAGPVTMTSPPPSDVPLPAFFTKKATN
Sbjct: 121 GPDPGLIPGQISLSGRKSKSAPFYAGPVTMTSPPPSDVPLPAFFTKKATN 170
>ref|NP_180097.1| unknown protein; protein id: At2g25250.1, supported by cDNA:
gi_13272400 [Arabidopsis
thaliana]|gi|25370625|pir||B84646 hypothetical protein
At2g25250 [imported] - Arabidopsis
thaliana|gi|4567252|gb|AAD23666.1| unknown protein
[Arabidopsis
thaliana]|gi|13272401|gb|AAK17139.1|AF325071_1 unknown
protein [Arabidopsis thaliana]
Length = 155
Score = 89.7 bits (221), Expect = 1e-16
Identities = 64/167 (38%), Positives = 79/167 (46%)
Frame = +3
Query: 96 MGVAVLNPQDCLKDPFSHMKQHRNPSACPNRQKKTVSNNRTXXXXXXXXXXXXXXXXXXX 275
MGVAVL+P D + +H + +P P R KK ++N R
Sbjct: 1 MGVAVLHPHDSI---INHFSTNTSP---PLRHKKPITNRRRRSPSSHQSQISH------- 47
Query: 276 XXXXXXXXXXXFVPKGTLKKSLSNTVAVSQVRILKRGEEIPKETSDLVVEMSDLGSTRRI 455
S + VRILKRGE+I + + +E DL S R+I
Sbjct: 48 -------------------PPPSPHNHTNHVRILKRGEDINVK---IPIEKPDLKSNRQI 85
Query: 456 GPDPGLIPGQIRLSGRKSKSAPFYAGPVTMTSPPPSDVPLPAFFTKK 596
G DP I IR+S RKS A FYAGPVT TSPPPS+VPLPAFF K
Sbjct: 86 GSDPMKISTPIRISNRKSMPALFYAGPVTSTSPPPSEVPLPAFFANK 132
>gb|AAO24534.1| At2g25250 [Arabidopsis thaliana]
Length = 121
Score = 50.1 bits (118), Expect = 9e-05
Identities = 22/27 (81%), Positives = 23/27 (84%)
Frame = +3
Query: 516 APFYAGPVTMTSPPPSDVPLPAFFTKK 596
A FYAGPVT TSPPPS+VPLPAFF K
Sbjct: 72 ALFYAGPVTSTSPPPSEVPLPAFFANK 98
>ref|NP_192113.1| hypothetical protein; protein id: At4g02040.1 [Arabidopsis
thaliana]|gi|7486847|pir||T01505 hypothetical protein
T10M13.5 - Arabidopsis
thaliana|gi|3912920|gb|AAC78696.1| hypothetical protein
[Arabidopsis thaliana]|gi|7268588|emb|CAB80697.1|
hypothetical protein [Arabidopsis thaliana]
Length = 152
Score = 45.1 bits (105), Expect = 0.003
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 16/98 (16%)
Frame = +3
Query: 351 VAVSQVRILKRGEEIPK-----------ETSDLVVEMSD-----LGSTRRIGPDPGLIPG 482
+ + QV+ILKRGE + +T V++M + +T RIGP+P ++
Sbjct: 55 LVMEQVKILKRGETLSAFNKNKENISSDDTRRPVLKMIKDVDLIVSATNRIGPEPEILMK 114
Query: 483 QIRLSGRKSKSAPFYAGPVTMTSPPPSDVPLPAFFTKK 596
QI G +S +AG SPPPS VP+P F K
Sbjct: 115 QIGALGLQS-----FAGANCSLSPPPSCVPIPCFLGTK 147
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 127
effective length of database: 259,129,699
effective search space used: 93804951038
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)