BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.41.cl.4109.Contig1
         (130 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_186799.1|  carbonic anhydrase, chloroplast precursor;...    37   0.11 
gb|AAL16116.1|AF428284_1  AT3g01500/F4P13_5 [Arabidopsis tha...    37   0.11 

>ref|NP_186799.1| carbonic anhydrase, chloroplast precursor; protein id: At3g01500.1,
           supported by cDNA: gi_15810272, supported by cDNA:
           gi_17065417, supported by cDNA: gi_20148658 [Arabidopsis
           thaliana]|gi|115470|sp|P27140|CAHC_ARATH Carbonic
           anhydrase, chloroplast precursor (Carbonate
           dehydratase)|gi|320554|pir||S28412 carbonate dehydratase
           (EC 4.2.1.1) precursor, chloroplast - Arabidopsis
           thaliana|gi|14343|emb|CAA46508.1| carbonic anhydrase
           [Arabidopsis
           thaliana]|gi|6016709|gb|AAF01535.1|AC009325_5 carbonic
           anhydrase, chloroplast precursor [Arabidopsis
           thaliana]|gi|15810273|gb|AAL07024.1| putative carbonic
           anhydrase, chloroplast precursor [Arabidopsis
           thaliana]|gi|17065418|gb|AAL32863.1| carbonic anhydrase,
           chloroplast precursor [Arabidopsis
           thaliana]|gi|20148659|gb|AAM10220.1| carbonic anhydrase,
           chloroplast precursor [Arabidopsis thaliana]
          Length = 336

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +2

Query: 80  MSTAPLSGFFLTSLSPS 130
           MSTAPLSGFFLTSLSPS
Sbjct: 1   MSTAPLSGFFLTSLSPS 17



>gb|AAL16116.1|AF428284_1 AT3g01500/F4P13_5 [Arabidopsis
           thaliana]|gi|16226669|gb|AAL16228.1|AF428459_1
           AT3g01500/F4P13_5 [Arabidopsis thaliana]
          Length = 347

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +2

Query: 80  MSTAPLSGFFLTSLSPS 130
           MSTAPLSGFFLTSLSPS
Sbjct: 1   MSTAPLSGFFLTSLSPS 17



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 18
effective length of database: 405,085,713
effective search space used: 9722057112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)