BLAST Search Results

BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.4.cl.414.Contig1
         (881 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_186896.1|  S-adenosylmethionine decarboxylase; protei...   186   3e-46
gb|AAL06846.1|  AT3g02470/F16B3_10 [Arabidopsis thaliana]         186   3e-46
gb|AAB17665.1|  S-adenosylmethionine decarboxylase [Arabidop...   186   3e-46
emb|CAA69073.1|  S-adenosylmethionine decarboxylase [Arabido...   186   3e-46
sp|Q9SDM8|DCA3_BRAJU  S-adenosylmethionine decarboxylase pro...   178   1e-43

>ref|NP_186896.1| S-adenosylmethionine decarboxylase; protein id: At3g02470.1,
           supported by cDNA: gi_14596072, supported by cDNA:
           gi_15809835, supported by cDNA: gi_16226704 [Arabidopsis
           thaliana]|gi|19864681|sp|Q96286|DCA1_ARATH
           S-adenosylmethionine decarboxylase proenzyme 1 (AdoMetDC
           1) (SamDC 1) [Contains: S-adenosylmethionine
           decarboxylase 1 alpha chain; S-adenosylmethionine
           decarboxylase 1 beta chain]|gi|6957710|gb|AAF32454.1|
           S-adenosylmethionine decarboxylase [Arabidopsis
           thaliana]|gi|14596073|gb|AAK68764.1|
           S-adenosylmethionine decarboxylase [Arabidopsis
           thaliana]|gi|16226705|gb|AAL16237.1|AF428468_1
           AT3g02470/F16B3_10 [Arabidopsis
           thaliana]|gi|20148235|gb|AAM10008.1|
           S-adenosylmethionine decarboxylase [Arabidopsis
           thaliana]
          Length = 366

 Score =  186 bits (473), Expect = 3e-46
 Identities = 98/113 (86%), Positives = 98/113 (86%)
 Frame = +3

Query: 543 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNHQ 722
           MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSN Q
Sbjct: 1   MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 60

Query: 723 LDSYVLSESSFFAYPYKVIIKTCGTTXXXXXXXXXXXXAGELSLSAKSVKYTR 881
           LDSYVLSESSFF YPYKVIIKTCGTT            AGELSLS KSVKYTR
Sbjct: 61  LDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTR 113



>gb|AAL06846.1| AT3g02470/F16B3_10 [Arabidopsis thaliana]
          Length = 366

 Score =  186 bits (473), Expect = 3e-46
 Identities = 98/113 (86%), Positives = 98/113 (86%)
 Frame = +3

Query: 543 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNHQ 722
           MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSN Q
Sbjct: 1   MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 60

Query: 723 LDSYVLSESSFFAYPYKVIIKTCGTTXXXXXXXXXXXXAGELSLSAKSVKYTR 881
           LDSYVLSESSFF YPYKVIIKTCGTT            AGELSLS KSVKYTR
Sbjct: 61  LDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTR 113



>gb|AAB17665.1| S-adenosylmethionine decarboxylase [Arabidopsis thaliana]
          Length = 366

 Score =  186 bits (473), Expect = 3e-46
 Identities = 98/113 (86%), Positives = 98/113 (86%)
 Frame = +3

Query: 543 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNHQ 722
           MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSN Q
Sbjct: 1   MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 60

Query: 723 LDSYVLSESSFFAYPYKVIIKTCGTTXXXXXXXXXXXXAGELSLSAKSVKYTR 881
           LDSYVLSESSFF YPYKVIIKTCGTT            AGELSLS KSVKYTR
Sbjct: 61  LDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTR 113



>emb|CAA69073.1| S-adenosylmethionine decarboxylase [Arabidopsis thaliana]
          Length = 366

 Score =  186 bits (473), Expect = 3e-46
 Identities = 98/113 (86%), Positives = 98/113 (86%)
 Frame = +3

Query: 543 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNHQ 722
           MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSN Q
Sbjct: 1   MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 60

Query: 723 LDSYVLSESSFFAYPYKVIIKTCGTTXXXXXXXXXXXXAGELSLSAKSVKYTR 881
           LDSYVLSESSFF YPYKVIIKTCGTT            AGELSLS KSVKYTR
Sbjct: 61  LDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTR 113



>sp|Q9SDM8|DCA3_BRAJU S-adenosylmethionine decarboxylase proenzyme 3 (AdoMetDC 3) (SamDC
           3) [Contains: S-adenosylmethionine decarboxylase 3 alpha
           chain; S-adenosylmethionine decarboxylase 3 beta
           chain]|gi|6636362|gb|AAF20160.1|AF215665_1
           S-adenosyl-L-methionine decarboxylase [Brassica juncea]
          Length = 367

 Score =  178 bits (451), Expect = 1e-43
 Identities = 93/113 (82%), Positives = 95/113 (83%)
 Frame = +3

Query: 543 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNHQ 722
           MALSAIGFEGYEKRLEV+FFEPS FQDSKGLGLRALT+SQLDEILTPAAC IVSSLSN  
Sbjct: 1   MALSAIGFEGYEKRLEVSFFEPSFFQDSKGLGLRALTRSQLDEILTPAACEIVSSLSNDH 60

Query: 723 LDSYVLSESSFFAYPYKVIIKTCGTTXXXXXXXXXXXXAGELSLSAKSVKYTR 881
           LDSYVLSESSFF YPYKVIIKTCGTT            AGELSLS KSVKYTR
Sbjct: 61  LDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTR 113



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 122
effective length of database: 265,824,929
effective search space used: 45456062859
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results