BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.4.cl.409.Contig2
         (459 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||E42951  long-chain-fatty-acid-luciferin-component ligas...    32   3.0  
gb|AAF63158.1|AF191309_1  zinc finger protein [Mus musculus]       32   3.9  
ref|XP_232173.1|  similar to vomeronasal 1 receptor, A7 [Mus...    31   5.1  
emb|CAD54118.1|  hypothetical protein [Plasmodium falciparum...    30   8.7  
ref|NP_775135.1|  putative pheromone receptor VN7 [Rattus no...    30   8.7  

>pir||E42951 long-chain-fatty-acid-luciferin-component ligase (EC 6.2.1.19) luxE
           - Xenorhabdus luminescens|gi|155416|gb|AAD05359.1| luxE
           [Photorhabdus luminescens]
          Length = 370

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 164 GSWRGNQKQNISNNDPHHFLF--FNVAHLPLVHHYLCVFVKSNC-FQDPFRSYHTP 322
           G W+  +K+++  ND +H LF  FN++++  +         + C F+D  +  H P
Sbjct: 233 GGWKSYEKESLKRNDFNHLLFDTFNLSNINQIRDIFNQVELNTCFFEDEMQRKHVP 288



>gb|AAF63158.1|AF191309_1 zinc finger protein [Mus musculus]
          Length = 1070

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 15/49 (30%), Positives = 30/49 (60%)
 Frame = +3

Query: 39  PTSHTLLGSSNSTKFPHYSSFLLKNEIKEGSKSKRRRSEPNKDRGVEIR 185
           PT+HT L +S+  K P   +  + +E K+  + +R+R +P++  G++ R
Sbjct: 458 PTTHTRLPASSIKKQPDSPAGSVASEEKKDLRRRRKRRKPHRQLGMQER 506



>ref|XP_232173.1| similar to vomeronasal 1 receptor, A7 [Mus musculus] [Rattus
           norvegicus]
          Length = 492

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 22/73 (30%), Positives = 30/73 (40%), Gaps = 4/73 (5%)
 Frame = +2

Query: 203 NDPHH----FLFFNVAHLPLVHHYLCVFVKSNCFQDPFRSYHTPLCSLLLLSEKMGFGNL 370
           N PHH    F+F ++ +  +  H L   + +         Y T  CS L +S  M     
Sbjct: 90  NSPHHLSCFFIFMSIFYTSISSHILIAAIATQNLTSVNLIYITKSCSFLPMSSSM----- 144

Query: 371 IVVHTFSILLFFR 409
               TFS LL FR
Sbjct: 145 --QRTFSTLLAFR 155



>emb|CAD54118.1| hypothetical protein [Plasmodium falciparum 3D7]
          Length = 1236

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +2

Query: 179 NQKQNISNNDPHHFLFFNVAHLPLVHHYLCVFVKSNCFQDPFRSYHTPLCSLLLLSEKMG 358
           NQ  NI+ ND H+    N  H    H+Y     K     DP+ +YH       L   K+ 
Sbjct: 96  NQFINININDKHNIYHKN--HTLYNHYYHGKQKKKKILIDPYHNYHIINIKKFLYYSKLY 153

Query: 359 FGNLIVVHTFSIL 397
           F +   ++  SIL
Sbjct: 154 FNSFFHMYFKSIL 166



>ref|NP_775135.1| putative pheromone receptor VN7 [Rattus
           norvegicus]|gi|27712538|ref|XP_216218.1| putative
           pheromone receptor VN7 [Rattus
           norvegicus]|gi|1039472|gb|AAA92008.1| pheromone receptor
           VN7
          Length = 273

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +2

Query: 200 NNDPHH----FLFFNVAHLPLVHH-YLCVFVKSNCFQDPFRSYHTPLCSLLLLSEKMGFG 364
           +  PHH    +LFF V ++    H ++ V   SN   D F  Y T  CSLL +S      
Sbjct: 89  HKSPHHISGAYLFFCVLYMSFSSHLFVLVIATSNLTSDHFM-YVTQSCSLLPMSYSR--- 144

Query: 365 NLIVVHTFSILLFFR 409
                 TFS+L+  R
Sbjct: 145 ----TSTFSLLMVTR 155



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 112
effective length of database: 279,215,389
effective search space used: 11168615560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)