BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.4.cl.403.Contig1
(563 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194967.1| cellulose synthase catalytic subunit (RSW1... 73 3e-12
ref|NP_180124.1| putative cellulose synthase catalytic subu... 38 0.094
gb|AAM83096.1|AF525360_1 cellulose synthase catalytic subun... 37 0.16
gb|AAD32031.1|AF088917_1 cellulose synthase catalytic subun... 36 0.27
gb|AAM26299.1| cellulose synthase [Populus tremuloides] 36 0.27
>ref|NP_194967.1| cellulose synthase catalytic subunit (RSW1); protein id: At4g32410.1
[Arabidopsis thaliana]|gi|7484861|pir||T05351 cellulose
synthase (EC 2.4.1.-) catalytic chain RSW1 - Arabidopsis
thaliana|gi|2827139|gb|AAC39334.1| cellulose synthase
catalytic subunit [Arabidopsis
thaliana]|gi|4049343|emb|CAA22568.1| cellulose synthase
catalytic subunit (RSW1) [Arabidopsis
thaliana]|gi|7270145|emb|CAB79958.1| cellulose synthase
catalytic subunit (RSW1) [Arabidopsis thaliana]
Length = 1081
Score = 72.8 bits (177), Expect = 3e-12
Identities = 39/55 (70%), Positives = 40/55 (71%), Gaps = 1/55 (1%)
Frame = +1
Query: 10 PLLEGLW-EAXPTXTNVHVXXVFXPSIFSLLWVRINPFVDANPNANNFNGKGGVF 171
P L+GL T T V V V SIFSLLWVRINPFVDANPNANNFNGKGGVF
Sbjct: 1027 PFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRINPFVDANPNANNFNGKGGVF 1081
>ref|NP_180124.1| putative cellulose synthase catalytic subunit; protein id:
At2g25540.1 [Arabidopsis
thaliana]|gi|25412330|pir||F84649 probable cellulose
synthase catalytic subunit [imported] - Arabidopsis
thaliana|gi|4432865|gb|AAD20713.1| putative cellulose
synthase catalytic subunit [Arabidopsis thaliana]
Length = 1065
Score = 37.7 bits (86), Expect = 0.094
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 10 PLLEGLW-EAXPTXTNVHVXXVFXPSIFSLLWVRINPFVD-ANPNANNFNGK 159
P L+GL T T V V SIFSLLWVRINPFV +N+F G+
Sbjct: 1014 PFLKGLLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVSTTGVMSNSFMGE 1065
>gb|AAM83096.1|AF525360_1 cellulose synthase catalytic subunit [Mesotaenium caldariorum]
Length = 1129
Score = 37.0 bits (84), Expect = 0.16
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 10 PLLEGLW-EAXPTXTNVHVXXVFXPSIFSLLWVRINPFVD 126
P L+GL ++ T T + V V SIFSLLWV+INPF +
Sbjct: 1076 PFLKGLMGKSNRTPTLIIVWSVLLASIFSLLWVKINPFTN 1115
>gb|AAD32031.1|AF088917_1 cellulose synthase catalytic subunit [Arabidopsis thaliana]
Length = 1026
Score = 36.2 bits (82), Expect = 0.27
Identities = 21/39 (53%), Positives = 24/39 (60%), Gaps = 1/39 (2%)
Frame = +1
Query: 10 PLLEGLW-EAXPTXTNVHVXXVFXPSIFSLLWVRINPFV 123
P L+GL T T V + V SIFSLLWVRI+PFV
Sbjct: 973 PFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFV 1011
>gb|AAM26299.1| cellulose synthase [Populus tremuloides]
Length = 1032
Score = 36.2 bits (82), Expect = 0.27
Identities = 21/39 (53%), Positives = 24/39 (60%), Gaps = 1/39 (2%)
Frame = +1
Query: 10 PLLEGLW-EAXPTXTNVHVXXVFXPSIFSLLWVRINPFV 123
P L+GL T T V + V SIFSLLWVRI+PFV
Sbjct: 979 PFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFV 1017
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 116
effective length of database: 273,859,205
effective search space used: 19444003555
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)