BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.38.cl.3822.Contig1
         (142 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_683675.1|  similar to putative non-LTR retroelement r...    71   5e-12
ref|NP_178888.1|  putative non-LTR retroelement reverse tran...    69   1e-11
ref|NP_192309.1|  putative reverse transcriptase; protein id...    69   2e-11
ref|NP_190141.1|  putative protein; protein id: At3g45550.1 ...    62   3e-09
gb|AAF79677.1|AC022314_18  F9C16.26 [Arabidopsis thaliana]         61   5e-09

>ref|NP_683675.1| similar to putative non-LTR retroelement reverse transcriptase;
           protein id: At3g44035.1 [Arabidopsis thaliana]
          Length = 673

 Score = 70.9 bits (172), Expect = 5e-12
 Identities = 33/40 (82%), Positives = 36/40 (89%)
 Frame = -2

Query: 120 PELFGRKKKDMFNFIIDRIRQRAKSWSSRFLSTAGKATML 1
           PE+FGRKK+D+FN IIDRIRQRA SWSSRFLST GK TML
Sbjct: 69  PEMFGRKKRDLFNNIIDRIRQRALSWSSRFLSTVGKTTML 108



>ref|NP_178888.1| putative non-LTR retroelement reverse transcriptase; protein id:
           At2g11240.1 [Arabidopsis
           thaliana]|gi|25411392|pir||B84497 hypothetical protein
           At2g11240 [imported] - Arabidopsis
           thaliana|gi|4263655|gb|AAD15377.1| putative non-LTR
           retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1044

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -2

Query: 120 PELFGRKKKDMFNFIIDRIRQRAKSWSSRFLSTAGKATML 1
           P++FGRKK+D+FN I+DRIRQR+ SWSSRFLSTAGK TML
Sbjct: 580 PKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTML 619



>ref|NP_192309.1| putative reverse transcriptase; protein id: At4g04000.1
           [Arabidopsis thaliana]|gi|7487391|pir||T01474
           hypothetical protein T24H24.17 - Arabidopsis
           thaliana|gi|3377824|gb|AAC28197.1| contains similarity
           to reverse transcriptases [Arabidopsis
           thaliana]|gi|7267156|emb|CAB77868.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 1077

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = -2

Query: 120 PELFGRKKKDMFNFIIDRIRQRAKSWSSRFLSTAGKATML 1
           PELFGRKKKD+F  I+DRI+QRA SWSSRFLS+AGK TML
Sbjct: 689 PELFGRKKKDLFTAIVDRIKQRALSWSSRFLSSAGKLTML 728



>ref|NP_190141.1| putative protein; protein id: At3g45550.1 [Arabidopsis
           thaliana]|gi|11357921|pir||T47495 hypothetical protein
           F9K21.130 - Arabidopsis
           thaliana|gi|6996258|emb|CAB75484.1| putative protein
           [Arabidopsis thaliana]
          Length = 851

 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 26/40 (65%), Positives = 34/40 (85%)
 Frame = -2

Query: 120 PELFGRKKKDMFNFIIDRIRQRAKSWSSRFLSTAGKATML 1
           PE FGRKKK+MFN+IIDR+++R  SWS++FLS AGK  +L
Sbjct: 375 PEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILL 414



>gb|AAF79677.1|AC022314_18 F9C16.26 [Arabidopsis thaliana]
          Length = 1902

 Score = 60.8 bits (146), Expect = 5e-09
 Identities = 26/40 (65%), Positives = 34/40 (85%)
 Frame = -2

Query: 120 PELFGRKKKDMFNFIIDRIRQRAKSWSSRFLSTAGKATML 1
           PE FGRKKK+MF++IIDR+R+R  SW+++FLS AGK  ML
Sbjct: 674 PEQFGRKKKEMFDYIIDRVRKRTSSWNAKFLSPAGKEIML 713



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 22
effective length of database: 399,729,529
effective search space used: 9593508696
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)