BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.30.cl.3011.Contig1
         (133 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_663240.1|  hypothetical protein [Phthorimaea opercule...    30   7.5  

>ref|NP_663240.1| hypothetical protein [Phthorimaea operculella
           granulovirus]|gi|21637056|gb|AAM70273.1| hypothetical
           protein [Phthorimaea operculella granulovirus]
          Length = 379

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = -1

Query: 127 TTNLTFIQ--KFIAATLKRIHRRRTDYNNDVRKIYR 26
           T  LTF Q  K++  T+KR + +RTD + +V+++++
Sbjct: 58  TDKLTFFQQYKYVIDTIKRDYEQRTDSDEEVKQLFK 93



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 19
effective length of database: 403,746,667
effective search space used: 9689920008
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)