BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.3.cl.396.Contig1
(739 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL85971.1| unknown protein [Arabidopsis thaliana]|gi|20... 65 1e-09
gb|AAM91087.1| At5g26740 [Arabidopsis thaliana] 65 1e-09
pir||T51738 RNA helicase RH3 [imported] - Arabidopsis thali... 65 1e-09
gb|AAM26693.1| At5g26743 [Arabidopsis thaliana] 60 2e-08
gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa] 42 0.009
>gb|AAL85971.1| unknown protein [Arabidopsis thaliana]|gi|20259537|gb|AAM13888.1|
unknown protein [Arabidopsis
thaliana]|gi|20453225|gb|AAM19851.1| At5g26752
[Arabidopsis thaliana]|gi|21689779|gb|AAM67533.1|
unknown protein [Arabidopsis
thaliana]|gi|23397145|gb|AAN31856.1| unknown protein
[Arabidopsis thaliana]|gi|25090432|gb|AAN72300.1|
At5g26752/At5g26752 [Arabidopsis
thaliana]|gi|27311701|gb|AAO00816.1| Unknown protein
[Arabidopsis thaliana]
Length = 748
Score = 64.7 bits (156), Expect = 1e-09
Identities = 28/42 (66%), Positives = 28/42 (66%)
Frame = +3
Query: 108 LIGGXXXXXXXXXXXXXXFGGSCFICGKSGHRATDCPDKRGF 233
LIGG FGGSCFICGKSGHRATDCPDKRGF
Sbjct: 707 LIGGRSSSSSRAPSRERSFGGSCFICGKSGHRATDCPDKRGF 748
>gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
Length = 748
Score = 64.7 bits (156), Expect = 1e-09
Identities = 28/42 (66%), Positives = 28/42 (66%)
Frame = +3
Query: 108 LIGGXXXXXXXXXXXXXXFGGSCFICGKSGHRATDCPDKRGF 233
LIGG FGGSCFICGKSGHRATDCPDKRGF
Sbjct: 707 LIGGRSSSSSRAPSRERSFGGSCFICGKSGHRATDCPDKRGF 748
>pir||T51738 RNA helicase RH3 [imported] - Arabidopsis
thaliana|gi|3775987|emb|CAA09196.1| RNA helicase
[Arabidopsis thaliana]
Length = 748
Score = 64.7 bits (156), Expect = 1e-09
Identities = 28/42 (66%), Positives = 28/42 (66%)
Frame = +3
Query: 108 LIGGXXXXXXXXXXXXXXFGGSCFICGKSGHRATDCPDKRGF 233
LIGG FGGSCFICGKSGHRATDCPDKRGF
Sbjct: 707 LIGGRSSSSSRAPSRERSFGGSCFICGKSGHRATDCPDKRGF 748
>gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
Length = 747
Score = 60.5 bits (145), Expect = 2e-08
Identities = 28/42 (66%), Positives = 28/42 (66%)
Frame = +3
Query: 108 LIGGXXXXXXXXXXXXXXFGGSCFICGKSGHRATDCPDKRGF 233
LIGG FGGSCFICGKSGHRATDCPDKRGF
Sbjct: 707 LIGGRSSSSSRAPSRES-FGGSCFICGKSGHRATDCPDKRGF 747
>gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa]
Length = 758
Score = 42.0 bits (97), Expect = 0.009
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +3
Query: 162 FGGSCFICGKSGHRATDCPDK 224
F G+CF CG+SGHRA+DCP+K
Sbjct: 738 FSGACFNCGESGHRASDCPNK 758
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 120
effective length of database: 268,503,021
effective search space used: 33562877625
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)