BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.3.cl.383.Contig1
         (627 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_187988.1|  glycosyl hydrolase family 35 (beta-galacto...    57   1e-07
gb|AAM13196.1|  galactosidase, putative [Arabidopsis thaliana]     57   1e-07
emb|CAA07236.1|  beta-galactosidase [Cicer arietinum]              52   8e-06
emb|CAC44500.1|  beta-galactosidase [Fragaria x ananassa]          51   1e-05
sp|P45582|BGAL_ASPOF  Beta-galactosidase precursor (Lactase)...    48   9e-05

>ref|NP_187988.1| glycosyl hydrolase family 35 (beta-galactosidase); protein id:
           At3g13750.1, supported by cDNA: gi_20260595 [Arabidopsis
           thaliana]|gi|6686874|emb|CAB64737.1| putative
           beta-galactosidase [Arabidopsis
           thaliana]|gi|9294020|dbj|BAB01923.1| beta-galactosidase
           [Arabidopsis thaliana]
          Length = 847

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 25/26 (96%), Positives = 26/26 (99%)
 Frame = +2

Query: 5   TLAPEMFGGDPCPNVMKKLAVEAVCA 82
           T+APEMFGGDPCPNVMKKLAVEAVCA
Sbjct: 822 TVAPEMFGGDPCPNVMKKLAVEAVCA 847



>gb|AAM13196.1| galactosidase, putative [Arabidopsis thaliana]
          Length = 847

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 25/26 (96%), Positives = 26/26 (99%)
 Frame = +2

Query: 5   TLAPEMFGGDPCPNVMKKLAVEAVCA 82
           T+APEMFGGDPCPNVMKKLAVEAVCA
Sbjct: 822 TVAPEMFGGDPCPNVMKKLAVEAVCA 847



>emb|CAA07236.1| beta-galactosidase [Cicer arietinum]
          Length = 707

 Score = 51.6 bits (122), Expect = 8e-06
 Identities = 20/25 (80%), Positives = 25/25 (100%)
 Frame = +2

Query: 5   TLAPEMFGGDPCPNVMKKLAVEAVC 79
           T++PE+FGGDPCPNVMKKL+VEA+C
Sbjct: 682 TVSPEIFGGDPCPNVMKKLSVEAIC 706



>emb|CAC44500.1| beta-galactosidase [Fragaria x ananassa]
          Length = 843

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 20/26 (76%), Positives = 25/26 (95%)
 Frame = +2

Query: 5   TLAPEMFGGDPCPNVMKKLAVEAVCA 82
           T++PE FGGDPCPNVMKKL+VEA+C+
Sbjct: 818 TVSPENFGGDPCPNVMKKLSVEAICS 843



>sp|P45582|BGAL_ASPOF Beta-galactosidase precursor (Lactase)|gi|542198|pir||S41889
           beta-galactosidase (EC 3.2.1.23) - garden
           asparagus|gi|452712|emb|CAA54525.1| beta-galactosidase
           [Asparagus officinalis]
          Length = 832

 Score = 48.1 bits (113), Expect = 9e-05
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +2

Query: 8   LAPEMFGGDPCPNVMKKLAVEAVC 79
           +APE+FGGDPCP  MKKLAVEA+C
Sbjct: 808 VAPEVFGGDPCPGTMKKLAVEAIC 831



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 117
effective length of database: 272,520,159
effective search space used: 24799334469
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)