BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.3.cl.362.Contig1
(3593 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO00851.1| Unknown protein [Arabidopsis thaliana] 1858 0.0
ref|NP_509934.1| FERM domain (Band 4.1 family) FRM-3 (frm-3... 440 e-122
ref|NP_649505.1| CG31536-PC [Drosophila melanogaster]|gi|16... 342 3e-92
gb|EAA01210.1| agCP12227 [Anopheles gambiae str. PEST] 339 2e-91
ref|NP_730882.1| CG31536-PA [Drosophila melanogaster]|gi|23... 266 2e-69
>gb|AAO00851.1| Unknown protein [Arabidopsis thaliana]
Length = 1157
Score = 1858 bits (4813), Expect = 0.0
Identities = 946/1157 (81%), Positives = 946/1157 (81%)
Frame = +2
Query: 53 MLGAVTSAAGPSNVHLHLRQHXXXXXXXXXXXXXXXXXXXXXSSGRLMCVKVRLLDDTVA 232
MLGAVTSAAGPSNVHLHLRQH SSGRLMCVKVRLLDDTVA
Sbjct: 1 MLGAVTSAAGPSNVHLHLRQHPPRGVGAPPPPGLEPTLLGQPSSGRLMCVKVRLLDDTVA 60
Query: 233 VFHLGNKALGQTLFDEVCRHLNLLECDYFGLEFIDQQGGHIWLDKDKPILRQVAAAHSDA 412
VFHLGNKALGQTLFDEVCRHLNLLECDYFGLEFIDQQGGHIWLDKDKPILRQVAAAHSDA
Sbjct: 61 VFHLGNKALGQTLFDEVCRHLNLLECDYFGLEFIDQQGGHIWLDKDKPILRQVAAAHSDA 120
Query: 413 KFYFVVKFYTPSPTELEEEYTRYLFSLQIRRDLANGDLLCAESTAALLAAYLVQAECGDW 592
KFYFVVKFYTPSPTELEEEYTRYLFSLQIRRDLANGDLLCAESTAALLAAYLVQAECGDW
Sbjct: 121 KFYFVVKFYTPSPTELEEEYTRYLFSLQIRRDLANGDLLCAESTAALLAAYLVQAECGDW 180
Query: 593 SAHDYPDASYLNGARFVPAQTSNFQQMVAHNHSKLVGMSPGESDLSLLEVARRCDFFGIK 772
SAHDYPDASYLNGARFVPAQTSNFQQMVAHNHSKLVGMSPGESDLSLLEVARRCDFFGIK
Sbjct: 181 SAHDYPDASYLNGARFVPAQTSNFQQMVAHNHSKLVGMSPGESDLSLLEVARRCDFFGIK 240
Query: 773 FHPARDVEGVRAHLAVVHLGIKVFHQLHCVATFSWAXXXXXXXXXXXXXXXXHADQSEFS 952
FHPARDVEGVRAHLAVVHLGIKVFHQLHCVATFSWA HADQSEFS
Sbjct: 241 FHPARDVEGVRAHLAVVHLGIKVFHQLHCVATFSWAKIRKLSFKRRKLLLKLHADQSEFS 300
Query: 953 TVEFTFESRNECKNFWKKCVEHHAFFRCAQVIETNXXXXXXXXXXXXXXXXXXXXXKLFG 1132
TVEFTFESRNECKNFWKKCVEHHAFFRCAQVIETN KLFG
Sbjct: 301 TVEFTFESRNECKNFWKKCVEHHAFFRCAQVIETNGSRSASSGPSARRLGGGGGDGKLFG 360
Query: 1133 NTRGSSFRYHGRTQKQLIEYIRDYHKKREPFARPLKPEYNTYQXXXXXXXXXXXXXXXXX 1312
NTRGSSFRYHGRTQKQLIEYIRDYHKKREPFARPLKPEYNTYQ
Sbjct: 361 NTRGSSFRYHGRTQKQLIEYIRDYHKKREPFARPLKPEYNTYQQHSARAAAPHHHHHHHH 420
Query: 1313 XXXXKELDATTSEADRQRVVAQQMLHHQARQSSHHHEHERCCQHSGGTRARQARSLPRRA 1492
KELDATTSEADRQRVVAQQMLHHQARQSSHHHEHERCCQHSGGTRARQARSLPRRA
Sbjct: 421 RQPAKELDATTSEADRQRVVAQQMLHHQARQSSHHHEHERCCQHSGGTRARQARSLPRRA 480
Query: 1493 PLNPLDDVAPACPPTWLDGDDCAVSCCENGHRQTSHRNNNGRTPALGVTGGGGTHTPRSS 1672
PLNPLDDVAPACPPTWLDGDDCAVSCCENGHRQTSHRNNNGRTPALGVTGGGGTHTPRSS
Sbjct: 481 PLNPLDDVAPACPPTWLDGDDCAVSCCENGHRQTSHRNNNGRTPALGVTGGGGTHTPRSS 540
Query: 1673 QPPAYSAYFSKXXXXXXXXKRNSPSPMGANRLSMTDTVVSKSLPDVAVVEPHRNNTDTET 1852
QPPAYSAYFSK KRNSPSPMGANRLSMTDTVVSKSLPDVAVVEPHRNNTDTET
Sbjct: 541 QPPAYSAYFSKQQQQQQQQKRNSPSPMGANRLSMTDTVVSKSLPDVAVVEPHRNNTDTET 600
Query: 1853 DEKRGALSAGPSGERLDEKQTTLTDDNISCDSYQLADHERCTRSEVGTAGSVPPGNGTAV 2032
DEKRGALSAGPSGERLDEKQTTLTDDNISCDSYQLADHERCTRSEVGTAGSVPPGNGTAV
Sbjct: 601 DEKRGALSAGPSGERLDEKQTTLTDDNISCDSYQLADHERCTRSEVGTAGSVPPGNGTAV 660
Query: 2033 QGLSAAQRRLRNRSXXXXXXXXXXXXXXVQIDGPRTIGTTVNSDYATLETIDSGRRPVVY 2212
QGLSAAQRRLRNRS VQIDGPRTIGTTVNSDYATLETIDSGRRPVVY
Sbjct: 661 QGLSAAQRRLRNRSAIAAKAVHEAAARAVQIDGPRTIGTTVNSDYATLETIDSGRRPVVY 720
Query: 2213 TPSGKLLIRPTVISSGDDDEQQRHQQGAKELVVVVEQEPADERGSMVKKEIIAAITTGGP 2392
TPSGKLLIRPTVISSGDDDEQQRHQQGAKELVVVVEQEPADERGSMVKKEIIAAITTGGP
Sbjct: 721 TPSGKLLIRPTVISSGDDDEQQRHQQGAKELVVVVEQEPADERGSMVKKEIIAAITTGGP 780
Query: 2393 LPGRILTTDELMITPDGIRAKSEPQKKTRPSSALLTEGPVVDXXXXXXXXXXXXXXXXXX 2572
LPGRILTTDELMITPDGIRAKSEPQKKTRPSSALLTEGPVVD
Sbjct: 781 LPGRILTTDELMITPDGIRAKSEPQKKTRPSSALLTEGPVVDLAERLANEAAQQALQEAR 840
Query: 2573 XXXXXPKRPQLISVQSVDQPDIEHQLLLDDPADEVPYTLTMRKXXXXXXXXXXXXXXXXX 2752
PKRPQLISVQSVDQPDIEHQLLLDDPADEVPYTLTMRK
Sbjct: 841 CEQERPKRPQLISVQSVDQPDIEHQLLLDDPADEVPYTLTMRKLDAAAPASTTSAPLAPP 900
Query: 2753 XXXXXXXXXXXXXXLFEDECRARVGVEEEPCKRLRRRVSLDLVARRRLPSPASFSSQDHS 2932
LFEDECRARVGVEEEPCKRLRRRVSLDLVARRRLPSPASFSSQDHS
Sbjct: 901 PPPPRSDRSSAPRRLFEDECRARVGVEEEPCKRLRRRVSLDLVARRRLPSPASFSSQDHS 960
Query: 2933 LSPCTPDAGDLFEYIAMMRRRSASNERVAAATGAIPXXXXXXXXXXXXTQPVRFELPDMM 3112
LSPCTPDAGDLFEYIAMMRRRSASNERVAAATGAIP TQPVRFELPDMM
Sbjct: 961 LSPCTPDAGDLFEYIAMMRRRSASNERVAAATGAIPSSSSRRNDARRRTQPVRFELPDMM 1020
Query: 3113 EESCTAPKLTAESTPQLSAPAEEKRSDEKKECREXXXXXXXXXXXXXXXXXXXXXXSKRG 3292
EESCTAPKLTAESTPQLSAPAEEKRSDEKKECRE SKRG
Sbjct: 1021 EESCTAPKLTAESTPQLSAPAEEKRSDEKKECRESADSDDVPLPPPPPPTTASAVTSKRG 1080
Query: 3293 PPPAVPSKPVGLMRILPGGTGLPPPRXXXXXXXGETMPNNAEDLPFVDEQTAPSXXXXXX 3472
PPPAVPSKPVGLMRILPGGTGLPPPR GETMPNNAEDLPFVDEQTAPS
Sbjct: 1081 PPPAVPSKPVGLMRILPGGTGLPPPRQQQSQQQGETMPNNAEDLPFVDEQTAPSPVKGGE 1140
Query: 3473 XXXXXXXXXSELMWTDF 3523
SELMWTDF
Sbjct: 1141 GKGDPKKPPSELMWTDF 1157
>ref|NP_509934.1| FERM domain (Band 4.1 family) FRM-3 (frm-3) [Caenorhabditis
elegans]|gi|7504861|pir||T23047 hypothetical protein
H05G16.1 - Caenorhabditis
elegans|gi|3878007|emb|CAB10024.1| C. elegans FRM-3
protein (corresponding sequence H05G16.1) [Caenorhabditis
elegans]
Length = 1111
Score = 440 bits (1132), Expect = e-122
Identities = 216/379 (56%), Positives = 267/379 (69%), Gaps = 22/379 (5%)
Frame = +2
Query: 185 GRLMCVKVRLLDDTVAVFHLG--------------------NKALGQTLFDEVCRHLNLL 304
GRL+C+KVR+LDDTVAVFHLG +KA+GQTL DEVCRHLNLL
Sbjct: 22 GRLVCIKVRMLDDTVAVFHLGVICFFFCVVSFHGTYVFLLQHKAIGQTLLDEVCRHLNLL 81
Query: 305 ECDYFGLEFIDQQGGHIWLDKDKPILRQVAAAHSDAKFYFVVKFYTPSPTELEEEYTRYL 484
ECDYFGL FID G H WLD++K ILRQ+ +DAKFYFVVKFYTP+P +LEEEYTRYL
Sbjct: 82 ECDYFGLSFIDINGNHCWLDREKTILRQITNGSTDAKFYFVVKFYTPNPIDLEEEYTRYL 141
Query: 485 FSLQIRRDLANGDLLCAESTAALLAAYLVQAECGDWSAHDYPDASYLNGARFVPAQTSNF 664
F++QI+RDLA G+L C+++TA+LL+AYLVQ+ECGD+S+ DYPDA+YL+ RFVP QT F
Sbjct: 142 FTMQIKRDLALGELHCSDNTASLLSAYLVQSECGDFSSEDYPDATYLSHTRFVPNQTLEF 201
Query: 665 QQMVAHNHSKLVGMSPGESDLSLLEVARRCDFFGIKFHPARDVEGVRAHLAVVHLGIKVF 844
Q+ V NH +GM+PGESDL++LEVARRCDF+G+K H A+D++G A L+V+HLGIKVF
Sbjct: 202 QKKVMDNHRNFIGMTPGESDLAMLEVARRCDFYGVKLHAAKDIDGNDAALSVMHLGIKVF 261
Query: 845 HQLHCVATFSWAXXXXXXXXXXXXXXXXHADQSEF--STVEFTFESRNECKNFWKKCVEH 1018
QL TFSWA H D ++ TVEF+FE+R+ECKNFWKKCVEH
Sbjct: 262 RQLQLDTTFSWARIRKLSFKRKKLLVKLHPDSYQYLKETVEFSFETRDECKNFWKKCVEH 321
Query: 1019 HAFFRCAQVIETNXXXXXXXXXXXXXXXXXXXXXKLFGNTRGSSFRYHGRTQKQLIEYIR 1198
HAFFRC Q E F ++GSSFRYHGRTQKQLI+Y+R
Sbjct: 322 HAFFRCVQAEEPKKETR-------------------FFISKGSSFRYHGRTQKQLIDYVR 362
Query: 1199 DYHKKREPFARPLKPEYNT 1255
++HK+REPF RPL+ +T
Sbjct: 363 EHHKRREPFTRPLRSAAST 381
Score = 136 bits (343), Expect = 2e-30
Identities = 136/500 (27%), Positives = 195/500 (38%), Gaps = 62/500 (12%)
Frame = +2
Query: 1790 SKSLPDVAVVEPHRNNTDT-----ETDEKRGALSAGPSGERLDEKQTTLTDDNISCDSYQ 1954
SK PD++V P+ + D E + ++ SG+ +++++ DN+S DSY+
Sbjct: 502 SKEQPDLSVSLPNVLSDDLQMVCKEIEIEQNDPPKSVSGDNFQQRRSSRDYDNVSEDSYR 561
Query: 1955 LADHERCTRSEVGTAG------------------------------SVPPGNGTAVQGLS 2044
L+DHER TRSEVG S P L
Sbjct: 562 LSDHERSTRSEVGVGSKFAAATIFNSTFVARKPGSNVVKRVVAHTKSTPNSTDDEEGALK 621
Query: 2045 AAQRRLRNRSXXXXXXXXXXXXXXVQIDGPRT---------IGTTVNSDYATLETIDSGR 2197
+A R ++IDGP TT YA T +
Sbjct: 622 SASEYQTFRHIKEYPFARNANIVPIEIDGPNVDLSARRSPAATTTTTRTYANTTTTVTTT 681
Query: 2198 RPVVYTPSGKLLIRPTVISSGDDDEQQRHQQGAKELVVVVEQEPADERGSMVKKEIIAAI 2377
V+ T SG +L++P VIS+ + H + E G+ A+
Sbjct: 682 SKVL-TSSGAVLMKPKVISNDHEPSSGTHSSRV-----------SPESGTY------GAL 723
Query: 2378 TTGGPLPGRILTTDELMITPDGIRAK----SEPQKKTRPSSALLTEG------------- 2506
GPLPGR++T + +MITP+G + K + P K + P A+ +E
Sbjct: 724 ---GPLPGRVITKENMMITPEGFKEKKAKPNPPPKPSFPVQAVHSETEVVREIKTERASS 780
Query: 2507 -PVVDXXXXXXXXXXXXXXXXXXXXXXXPKRPQLISVQSVDQPDIEHQLLLDDPADEVPY 2683
P+V RP LISVQS D PD++ L + ++PY
Sbjct: 781 HPLVHMQEEIPFSRAPLKFEDKKERKSSLSRPALISVQSEDNPDVQKCHLFN---SDIPY 837
Query: 2684 TLTMRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFEDECRARVGVEEEPCKRLRRR 2863
TLTMR +E RV E +RR
Sbjct: 838 TLTMRNVENTQSLPYSSFKDVSTAKKQG----------YESNSLKRVSKSPE----FKRR 883
Query: 2864 VSLDLVARRRLPSPASFSSQDHSLSPCTPDAGDLFEYIAMMRRRSASNERVAAATGAIPX 3043
SLDLV R+RLPSP +FS+QDH++SP TPD+ D+ EY ++RRRS ++ T
Sbjct: 884 KSLDLVPRKRLPSPGNFSAQDHTISPTTPDS-DVLEY--LLRRRSLLGDKSVIKT----- 935
Query: 3044 XXXXXXXXXXXTQPVRFELP 3103
TQPVRF+LP
Sbjct: 936 -KSKRTDPRRQTQPVRFDLP 954
>ref|NP_649505.1| CG31536-PC [Drosophila melanogaster]|gi|16648516|gb|AAL25523.1|
SD09116p [Drosophila
melanogaster]|gi|23170465|gb|AAF52081.2| CG31536-PC
[Drosophila melanogaster]
Length = 404
Score = 342 bits (876), Expect = 3e-92
Identities = 172/352 (48%), Positives = 225/352 (63%), Gaps = 3/352 (0%)
Frame = +2
Query: 185 GRLMCVKVRLLDDTVAVFHLGNKALGQTLFDEVCRHLNLLECDYFGLEFID-QQGGHIWL 361
G+ + V++++LDD++ +F + KALG+ LF++VCR LNLLE DYFGLE+ + WL
Sbjct: 66 GKKLTVRIQMLDDSITMFQVQAKALGRVLFEQVCRQLNLLEADYFGLEYQEVSTHTKYWL 125
Query: 362 DKDKPILRQVAAAHSDAKFYFVVKFYTPSPTELEEEYTRYLFSLQIRRDLANGDLLCAES 541
D +KP+ RQV + D F +KFYTP P +LEEEYTRYLF LQI+RDLA G L C ++
Sbjct: 126 DLEKPMNRQVGLSLIDPVLRFCIKFYTPDPAQLEEEYTRYLFCLQIKRDLATGSLQCNDN 185
Query: 542 TAALLAAYLVQAECGDWSAHDYPDASYLNGARFVPAQTSNFQQMVAHNHSKLVGMSPGES 721
TAAL+A+Y+VQA CGD+ DYPD +YL+ RFVP Q + Q+ + NH K VG SP E+
Sbjct: 186 TAALMASYIVQASCGDFVPEDYPDHTYLSSYRFVPNQDATMQRKIMENHKKHVGQSPAEA 245
Query: 722 DLSLLEVARRCDFFGIKFHPARDVEGVRAHLAVVHLGIKVFHQLHCVATFSWAXXXXXXX 901
DL+LLE ARRC+ +G+K HPA+DVEGV +LAV H+GI VF + + TFSWA
Sbjct: 246 DLNLLETARRCELYGMKMHPAKDVEGVPLNLAVAHMGITVFQNITRINTFSWAKIRKISF 305
Query: 902 XXXXXXXXXHADQSEF--STVEFTFESRNECKNFWKKCVEHHAFFRCAQVIETNXXXXXX 1075
H + + TVEF FE RNECKNFWKKCVE+H FFRC V T
Sbjct: 306 KRKRFLVKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFFRCTAVQNTPRRKTRV 365
Query: 1076 XXXXXXXXXXXXXXXKLFGNTRGSSFRYHGRTQKQLIEYIRDYHKKREPFAR 1231
+RGSSFRY G+TQKQ+IE++R+ + KR+ F R
Sbjct: 366 L-------------------SRGSSFRYSGKTQKQIIEFVRENYVKRQNFQR 398
>gb|EAA01210.1| agCP12227 [Anopheles gambiae str. PEST]
Length = 379
Score = 339 bits (870), Expect = 2e-91
Identities = 170/352 (48%), Positives = 223/352 (63%), Gaps = 3/352 (0%)
Frame = +2
Query: 185 GRLMCVKVRLLDDTVAVFHLGNKALGQTLFDEVCRHLNLLECDYFGLEFIDQQGG-HIWL 361
G+ + V++++LDD+V +F + KA G+ LF++VCR LNLLE DYFGLE+ + G WL
Sbjct: 47 GKKLAVRIQMLDDSVTMFQVQAKATGKVLFEQVCRQLNLLEADYFGLEYQEAPSGTKYWL 106
Query: 362 DKDKPILRQVAAAHSDAKFYFVVKFYTPSPTELEEEYTRYLFSLQIRRDLANGDLLCAES 541
D +K + RQV + + F VKFYTP P +LEEEYTRYLF LQ++RDLA G L C ++
Sbjct: 107 DLEKSLNRQVGLSLVEPVLRFCVKFYTPDPLQLEEEYTRYLFCLQVKRDLATGSLQCNDN 166
Query: 542 TAALLAAYLVQAECGDWSAHDYPDASYLNGARFVPAQTSNFQQMVAHNHSKLVGMSPGES 721
TAAL+A+Y+VQA CGD++A DYPD +YL+ RFVP Q Q+ + NH K VG SP E+
Sbjct: 167 TAALMASYIVQASCGDYAAEDYPDHTYLSSYRFVPQQDHTMQRRIMENHKKHVGQSPAEA 226
Query: 722 DLSLLEVARRCDFFGIKFHPARDVEGVRAHLAVVHLGIKVFHQLHCVATFSWAXXXXXXX 901
DL+LLE ARRC+ +G+K HPA+D +GV +LAV H+GI VF + + TFSWA
Sbjct: 227 DLNLLETARRCELYGMKMHPAKDHDGVPLNLAVAHMGIAVFQGITRINTFSWAKIRKISF 286
Query: 902 XXXXXXXXXHADQSEF--STVEFTFESRNECKNFWKKCVEHHAFFRCAQVIETNXXXXXX 1075
H + + TVEF FE RNECKNFWKKCVE+H FFRC V
Sbjct: 287 KRKRFLIKLHPENYVYHKDTVEFFFEGRNECKNFWKKCVENHGFFRCTAVQNVQRRKARV 346
Query: 1076 XXXXXXXXXXXXXXXKLFGNTRGSSFRYHGRTQKQLIEYIRDYHKKREPFAR 1231
+RGSSFRY G+TQKQ+IE++RD + KR+ F R
Sbjct: 347 L-------------------SRGSSFRYSGKTQKQIIEFVRDNYVKRQTFQR 379
>ref|NP_730882.1| CG31536-PA [Drosophila melanogaster]|gi|23170463|gb|AAF52080.2|
CG31536-PA [Drosophila melanogaster]
Length = 931
Score = 266 bits (679), Expect = 2e-69
Identities = 126/233 (54%), Positives = 168/233 (72%), Gaps = 1/233 (0%)
Frame = +2
Query: 185 GRLMCVKVRLLDDTVAVFHLGNKALGQTLFDEVCRHLNLLECDYFGLEFID-QQGGHIWL 361
G+ + V++++LDD++ +F + KALG+ LF++VCR LNLLE DYFGLE+ + WL
Sbjct: 66 GKKLTVRIQMLDDSITMFQVQAKALGRVLFEQVCRQLNLLEADYFGLEYQEVSTHTKYWL 125
Query: 362 DKDKPILRQVAAAHSDAKFYFVVKFYTPSPTELEEEYTRYLFSLQIRRDLANGDLLCAES 541
D +KP+ RQV + D F +KFYTP P +LEEEYTRYLF LQI+RDLA G L C ++
Sbjct: 126 DLEKPMNRQVGLSLIDPVLRFCIKFYTPDPAQLEEEYTRYLFCLQIKRDLATGSLQCNDN 185
Query: 542 TAALLAAYLVQAECGDWSAHDYPDASYLNGARFVPAQTSNFQQMVAHNHSKLVGMSPGES 721
TAAL+A+Y+VQA CGD+ DYPD +YL+ RFVP Q + Q+ + NH K VG SP E+
Sbjct: 186 TAALMASYIVQASCGDFVPEDYPDHTYLSSYRFVPNQDATMQRKIMENHKKHVGQSPAEA 245
Query: 722 DLSLLEVARRCDFFGIKFHPARDVEGVRAHLAVVHLGIKVFHQLHCVATFSWA 880
DL+LLE ARRC+ +G+K HPA+DVEGV +LAV H+GI VF + + TFSWA
Sbjct: 246 DLNLLETARRCELYGMKMHPAKDVEGVPLNLAVAHMGITVFQNITRINTFSWA 298
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 134
effective length of database: 249,756,377
effective search space used: 265491028751
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)