BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.3.cl.358.Contig1
(2269 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_683362.1| similar to growth regulator, putative; pro... 1071 0.0
ref|NP_174909.1| axi 1 protein, putative [Arabidopsis thali... 890 0.0
gb|AAK93632.1| putative growth regulator protein [Arabidops... 525 e-147
ref|NP_564461.1| growth regulator, putative; protein id: At... 525 e-147
dbj|BAB93227.1| axi 1-like protein [Oryza sativa (japonica ... 518 e-145
>ref|NP_683362.1| similar to growth regulator, putative; protein id: At1g38131.1
[Arabidopsis thaliana]|gi|27311577|gb|AAO00754.1| Unknown
protein [Arabidopsis thaliana]
Length = 589
Score = 1071 bits (2769), Expect = 0.0
Identities = 536/589 (91%), Positives = 536/589 (91%)
Frame = +1
Query: 172 MKSKIHHQPXXXXXXXXXXXXXXCRSESPSPPLSPNXXXXXXXXXXXXXXASSFSXXXXX 351
MKSKIHHQP CRSESPSPPLSPN ASSFS
Sbjct: 1 MKSKIHHQPNGSNNGVVSSNDNGCRSESPSPPLSPNRRVLRRQRRQTLLRASSFSLRRNL 60
Query: 352 XXXXXXPMIYASGLLMCVGPFSGLVGWVYVPGSVYRSPEIYRKLKDDIFSDNSTALELSS 531
PMIYASGLLMCVGPFSGLVGWVYVPGSVYRSPEIYRKLKDDIFSDNSTALELSS
Sbjct: 61 RYLLLLPMIYASGLLMCVGPFSGLVGWVYVPGSVYRSPEIYRKLKDDIFSDNSTALELSS 120
Query: 532 VWKFKRRPKMPKPCPNSTVSSHFGLNRESSALAPSSGYLIVEANGGLNQQRSAICXXXXX 711
VWKFKRRPKMPKPCPNSTVSSHFGLNRESSALAPSSGYLIVEANGGLNQQRSAIC
Sbjct: 121 VWKFKRRPKMPKPCPNSTVSSHFGLNRESSALAPSSGYLIVEANGGLNQQRSAICNAVAV 180
Query: 712 XXXXXXXXXIPRFEFHAIWKDSSNFGDIYDEDHFISSLEGYVKIVRDVPDEIMTRFSYNV 891
IPRFEFHAIWKDSSNFGDIYDEDHFISSLEGYVKIVRDVPDEIMTRFSYNV
Sbjct: 181 AGLLNAVLVIPRFEFHAIWKDSSNFGDIYDEDHFISSLEGYVKIVRDVPDEIMTRFSYNV 240
Query: 892 SSIPTIRVQAWATVNYYNGEVYPVLKEHGVIRITPFANRLAMSVPPYIQLLRCIANYKAL 1071
SSIPTIRVQAWATVNYYNGEVYPVLKEHGVIRITPFANRLAMSVPPYIQLLRCIANYKAL
Sbjct: 241 SSIPTIRVQAWATVNYYNGEVYPVLKEHGVIRITPFANRLAMSVPPYIQLLRCIANYKAL 300
Query: 1072 KFSSPISTLAEKLVDRMVEKSSATGGKYVSVHLRFEEDMVAFSCCLYEGGRAEKSEMDVI 1251
KFSSPISTLAEKLVDRMVEKSSATGGKYVSVHLRFEEDMVAFSCCLYEGGRAEKSEMDVI
Sbjct: 301 KFSSPISTLAEKLVDRMVEKSSATGGKYVSVHLRFEEDMVAFSCCLYEGGRAEKSEMDVI 360
Query: 1252 RQKSWKGKFKRRDRVIRPDLNRVNGKCPLTPLEVGMMLRGMGFDNNTSIYLASGRIYQPE 1431
RQKSWKGKFKRRDRVIRPDLNRVNGKCPLTPLEVGMMLRGMGFDNNTSIYLASGRIYQPE
Sbjct: 361 RQKSWKGKFKRRDRVIRPDLNRVNGKCPLTPLEVGMMLRGMGFDNNTSIYLASGRIYQPE 420
Query: 1432 KHLAPLQEMFPRLYTKESLATPEELAPFQGYSSRMAALDYTVSLLSEVFVTTQGGNFPHF 1611
KHLAPLQEMFPRLYTKESLATPEELAPFQGYSSRMAALDYTVSLLSEVFVTTQGGNFPHF
Sbjct: 421 KHLAPLQEMFPRLYTKESLATPEELAPFQGYSSRMAALDYTVSLLSEVFVTTQGGNFPHF 480
Query: 1612 LMGHRRFLFGGHAKTVIPDKPKLVLLLQDMEMRWEVFKKEMKLMLGESDRKGVMVPRVRK 1791
LMGHRRFLFGGHAKTVIPDKPKLVLLLQDMEMRWEVFKKEMKLMLGESDRKGVMVPRVRK
Sbjct: 481 LMGHRRFLFGGHAKTVIPDKPKLVLLLQDMEMRWEVFKKEMKLMLGESDRKGVMVPRVRK 540
Query: 1792 INRKTSIYTYPLPECECIFHLSSNFSNTGNILSLGALHPSSNLISSARL 1938
INRKTSIYTYPLPECECIFHLSSNFSNTGNILSLGALHPSSNLISSARL
Sbjct: 541 INRKTSIYTYPLPECECIFHLSSNFSNTGNILSLGALHPSSNLISSARL 589
>ref|NP_174909.1| axi 1 protein, putative [Arabidopsis
thaliana]|gi|22267609|gb|AAM94943.1| growth
regulator-related protein [Arabidopsis thaliana]
Length = 470
Score = 890 bits (2301), Expect = 0.0
Identities = 446/470 (94%), Positives = 446/470 (94%), Gaps = 10/470 (2%)
Frame = +1
Query: 559 MPKPCPNSTVSSHFGLNR----------ESSALAPSSGYLIVEANGGLNQQRSAICXXXX 708
MPKPCPNSTVSSHFGLNR ESSALAPSSGYLIVEANGGLNQQRSAIC
Sbjct: 1 MPKPCPNSTVSSHFGLNRGINVFDEIFSESSALAPSSGYLIVEANGGLNQQRSAICNAVA 60
Query: 709 XXXXXXXXXXIPRFEFHAIWKDSSNFGDIYDEDHFISSLEGYVKIVRDVPDEIMTRFSYN 888
IPRFEFHAIWKDSSNFGDIYDEDHFISSLEGYVKIVRDVPDEIMTRFSYN
Sbjct: 61 VAGLLNAVLVIPRFEFHAIWKDSSNFGDIYDEDHFISSLEGYVKIVRDVPDEIMTRFSYN 120
Query: 889 VSSIPTIRVQAWATVNYYNGEVYPVLKEHGVIRITPFANRLAMSVPPYIQLLRCIANYKA 1068
VSSIPTIRVQAWATVNYYNGEVYPVLKEHGVIRITPFANRLAMSVPPYIQLLRCIANYKA
Sbjct: 121 VSSIPTIRVQAWATVNYYNGEVYPVLKEHGVIRITPFANRLAMSVPPYIQLLRCIANYKA 180
Query: 1069 LKFSSPISTLAEKLVDRMVEKSSATGGKYVSVHLRFEEDMVAFSCCLYEGGRAEKSEMDV 1248
LKFSSPISTLAEKLVDRMVEKSSATGGKYVSVHLRFEEDMVAFSCCLYEGGRAEKSEMDV
Sbjct: 181 LKFSSPISTLAEKLVDRMVEKSSATGGKYVSVHLRFEEDMVAFSCCLYEGGRAEKSEMDV 240
Query: 1249 IRQKSWKGKFKRRDRVIRPDLNRVNGKCPLTPLEVGMMLRGMGFDNNTSIYLASGRIYQP 1428
IRQKSWKGKFKRRDRVIRPDLNRVNGKCPLTPLEVGMMLRGMGFDNNTSIYLASGRIYQP
Sbjct: 241 IRQKSWKGKFKRRDRVIRPDLNRVNGKCPLTPLEVGMMLRGMGFDNNTSIYLASGRIYQP 300
Query: 1429 EKHLAPLQEMFPRLYTKESLATPEELAPFQGYSSRMAALDYTVSLLSEVFVTTQGGNFPH 1608
EKHLAPLQEMFPRLYTKESLATPEELAPFQGYSSRMAALDYTVSLLSEVFVTTQGGNFPH
Sbjct: 301 EKHLAPLQEMFPRLYTKESLATPEELAPFQGYSSRMAALDYTVSLLSEVFVTTQGGNFPH 360
Query: 1609 FLMGHRRFLFGGHAKTVIPDKPKLVLLLQDMEMRWEVFKKEMKLMLGESDRKGVMVPRVR 1788
FLMGHRRFLFGGHAKTVIPDKPKLVLLLQDMEMRWEVFKKEMKLMLGESDRKGVMVPRVR
Sbjct: 361 FLMGHRRFLFGGHAKTVIPDKPKLVLLLQDMEMRWEVFKKEMKLMLGESDRKGVMVPRVR 420
Query: 1789 KINRKTSIYTYPLPECECIFHLSSNFSNTGNILSLGALHPSSNLISSARL 1938
KINRKTSIYTYPLPECECIFHLSSNFSNTGNILSLGALHPSSNLISSARL
Sbjct: 421 KINRKTSIYTYPLPECECIFHLSSNFSNTGNILSLGALHPSSNLISSARL 470
>gb|AAK93632.1| putative growth regulator protein [Arabidopsis thaliana]
Length = 568
Score = 525 bits (1352), Expect = e-147
Identities = 267/503 (53%), Positives = 363/503 (72%), Gaps = 12/503 (2%)
Frame = +1
Query: 370 PMIYASGLLMCVGPFSGLV-------GWVY---VPGSVYRSPEIYRKLKDDIFSD--NST 513
P++Y +G+L+ +G F V VY PGSVYRSP+++++L + +D S+
Sbjct: 69 PLLYIAGMLLFMGSFGFTVLDLGHGVEIVYRRGSPGSVYRSPKVFKRLWPVMEADVNGSS 128
Query: 514 ALELSSVWKFKRRPKMPKPCPNSTVSSHFGLNRESSALAPSSGYLIVEANGGLNQQRSAI 693
L WK R + KPC ++ VS+ A + S+GY I+EANGGLNQQR +I
Sbjct: 129 HNVLMEAWK-PRVKSVWKPCISTNVSA---------AGSNSNGYFIIEANGGLNQQRLSI 178
Query: 694 CXXXXXXXXXXXXXXIPRFEFHAIWKDSSNFGDIYDEDHFISSLEGYVKIVRDVPDEIMT 873
C IP F +++W+DSS FGDI+DED FI +L V +V+++P +++
Sbjct: 179 CDAVAVAGLLNATLVIPIFHLNSVWRDSSKFGDIFDEDFFIYALSKNVNVVKELPKDVLE 238
Query: 874 RFSYNVSSIPTIRVQAWATVNYYNGEVYPVLKEHGVIRITPFANRLAMSVPPYIQLLRCI 1053
R++YN+SSI +R++AW++ YY +V P L G +R+ PF+NRLA +VP +IQ LRC+
Sbjct: 239 RYNYNISSIVNLRLKAWSSPAYYLQKVLPQLLRLGAVRVAPFSNRLAHAVPAHIQGLRCL 298
Query: 1054 ANYKALKFSSPISTLAEKLVDRMVEKSSATGGKYVSVHLRFEEDMVAFSCCLYEGGRAEK 1233
AN++AL+F+ PI LAEK+VDRMV KS +GGKYVSVHLRFE DMVAFSCC Y+ G+AEK
Sbjct: 299 ANFEALRFAEPIRLLAEKMVDRMVTKSVESGGKYVSVHLRFEMDMVAFSCCEYDFGQAEK 358
Query: 1234 SEMDVIRQKSWKGKFKRRDRVIRPDLNRVNGKCPLTPLEVGMMLRGMGFDNNTSIYLASG 1413
EMD+ R++ WKGKF+RR RVIRP NR++GKCPLTPLEVGMMLRGMGF+N+T +Y+A+G
Sbjct: 359 LEMDMARERGWKGKFRRRGRVIRPGANRIDGKCPLTPLEVGMMLRGMGFNNSTLVYVAAG 418
Query: 1414 RIYQPEKHLAPLQEMFPRLYTKESLATPEELAPFQGYSSRMAALDYTVSLLSEVFVTTQG 1593
IY+ +K++APL++MFP L TK++LATPEELAPF+G+SSR+AALDYTV L SEVFV+TQG
Sbjct: 419 NIYKADKYMAPLRQMFPLLQTKDTLATPEELAPFKGHSSRLAALDYTVCLHSEVFVSTQG 478
Query: 1594 GNFPHFLMGHRRFLFGGHAKTVIPDKPKLVLLLQDMEMRWEVFKKEMKLMLGESDRKGVM 1773
GNFPHFL+GHRR+L+ GHA+T+ PDK KLV LL +RW+ FKK+M+ ML +D KGV
Sbjct: 479 GNFPHFLIGHRRYLYKGHAETIKPDKRKLVQLLDKPSIRWDYFKKQMQDMLRHNDAKGV- 537
Query: 1774 VPRVRKINRKTSIYTYPLPECEC 1842
+RK S+YT+P+P+C C
Sbjct: 538 --ELRK--PAASLYTFPMPDCMC 556
>ref|NP_564461.1| growth regulator, putative; protein id: At1g35510.1, supported by
cDNA: gi_15293042 [Arabidopsis
thaliana]|gi|23297509|gb|AAN12984.1| putative growth
regulator [Arabidopsis thaliana]
Length = 568
Score = 525 bits (1352), Expect = e-147
Identities = 267/503 (53%), Positives = 363/503 (72%), Gaps = 12/503 (2%)
Frame = +1
Query: 370 PMIYASGLLMCVGPFSGLV-------GWVY---VPGSVYRSPEIYRKLKDDIFSD--NST 513
P++Y +G+L+ +G F V VY PGSVYRSP+++++L + +D S+
Sbjct: 69 PLLYIAGMLLFMGSFGFTVLDLGHGVEIVYRRGSPGSVYRSPKVFKRLWPVMEADVNGSS 128
Query: 514 ALELSSVWKFKRRPKMPKPCPNSTVSSHFGLNRESSALAPSSGYLIVEANGGLNQQRSAI 693
L WK R + KPC ++ VS+ A + S+GY I+EANGGLNQQR +I
Sbjct: 129 HNVLMEAWK-PRVKSVWKPCISTNVSA---------AGSNSNGYFIIEANGGLNQQRLSI 178
Query: 694 CXXXXXXXXXXXXXXIPRFEFHAIWKDSSNFGDIYDEDHFISSLEGYVKIVRDVPDEIMT 873
C IP F +++W+DSS FGDI+DED FI +L V +V+++P +++
Sbjct: 179 CDAVAVAGLLNATLVIPIFHLNSVWRDSSKFGDIFDEDFFIYALSKNVNVVKELPKDVLE 238
Query: 874 RFSYNVSSIPTIRVQAWATVNYYNGEVYPVLKEHGVIRITPFANRLAMSVPPYIQLLRCI 1053
R++YN+SSI +R++AW++ YY +V P L G +R+ PF+NRLA +VP +IQ LRC+
Sbjct: 239 RYNYNISSIVNLRLKAWSSPAYYLQKVLPQLLRLGAVRVAPFSNRLAHAVPAHIQGLRCL 298
Query: 1054 ANYKALKFSSPISTLAEKLVDRMVEKSSATGGKYVSVHLRFEEDMVAFSCCLYEGGRAEK 1233
AN++AL+F+ PI LAEK+VDRMV KS +GGKYVSVHLRFE DMVAFSCC Y+ G+AEK
Sbjct: 299 ANFEALRFAEPIRLLAEKMVDRMVTKSVESGGKYVSVHLRFEMDMVAFSCCEYDFGQAEK 358
Query: 1234 SEMDVIRQKSWKGKFKRRDRVIRPDLNRVNGKCPLTPLEVGMMLRGMGFDNNTSIYLASG 1413
EMD+ R++ WKGKF+RR RVIRP NR++GKCPLTPLEVGMMLRGMGF+N+T +Y+A+G
Sbjct: 359 LEMDMARERGWKGKFRRRGRVIRPGANRIDGKCPLTPLEVGMMLRGMGFNNSTLVYVAAG 418
Query: 1414 RIYQPEKHLAPLQEMFPRLYTKESLATPEELAPFQGYSSRMAALDYTVSLLSEVFVTTQG 1593
IY+ +K++APL++MFP L TK++LATPEELAPF+G+SSR+AALDYTV L SEVFV+TQG
Sbjct: 419 NIYKADKYMAPLRQMFPLLQTKDTLATPEELAPFKGHSSRLAALDYTVCLHSEVFVSTQG 478
Query: 1594 GNFPHFLMGHRRFLFGGHAKTVIPDKPKLVLLLQDMEMRWEVFKKEMKLMLGESDRKGVM 1773
GNFPHFL+GHRR+L+ GHA+T+ PDK KLV LL +RW+ FKK+M+ ML +D KGV
Sbjct: 479 GNFPHFLIGHRRYLYKGHAETIKPDKRKLVQLLDKPSIRWDYFKKQMQDMLRHNDAKGV- 537
Query: 1774 VPRVRKINRKTSIYTYPLPECEC 1842
+RK S+YT+P+P+C C
Sbjct: 538 --ELRK--PAASLYTFPMPDCMC 556
>dbj|BAB93227.1| axi 1-like protein [Oryza sativa (japonica cultivar-group)]
Length = 577
Score = 518 bits (1334), Expect = e-145
Identities = 253/495 (51%), Positives = 348/495 (70%), Gaps = 4/495 (0%)
Frame = +1
Query: 370 PMIYASGLLMCVGPFS-GLVGWVY---VPGSVYRSPEIYRKLKDDIFSDNSTALELSSVW 537
P++Y + +L+ +G S V + PGS+YRSP++Y +L+ D+ +DN+T L++VW
Sbjct: 85 PLLYVAAMLLYMGSISLDSVPRIISRPAPGSLYRSPQLYARLRADMDADNATDA-LATVW 143
Query: 538 KFKRRPKMPKPCPNSTVSSHFGLNRESSALAPSSGYLIVEANGGLNQQRSAICXXXXXXX 717
+ + + +PC +N + L +GY+ VEANGGLNQQR++IC
Sbjct: 144 RHAYKGGIWRPC----------INNITYDLPELNGYIYVEANGGLNQQRASICNAVAVAG 193
Query: 718 XXXXXXXIPRFEFHAIWKDSSNFGDIYDEDHFISSLEGYVKIVRDVPDEIMTRFSYNVSS 897
IP F +H+IW+D S F DIYDE+HF+ L+ V++V VP+ IM RF +N+S+
Sbjct: 194 FLNATLVIPNFHYHSIWRDPSKFSDIYDEEHFVQRLKNDVRVVDKVPEFIMERFGHNLSN 253
Query: 898 IPTIRVQAWATVNYYNGEVYPVLKEHGVIRITPFANRLAMSVPPYIQLLRCIANYKALKF 1077
+ +++AW+++ YY V P L E +IRI+PFANRL+ P +Q LRC+AN++ALKF
Sbjct: 254 VFNFKIKAWSSIRYYKEAVLPKLIEERLIRISPFANRLSFDAPSAVQRLRCLANFEALKF 313
Query: 1078 SSPISTLAEKLVDRMVEKSSATGGKYVSVHLRFEEDMVAFSCCLYEGGRAEKSEMDVIRQ 1257
S PI+TL++ LV RM EKS+ GKYV+VHLRFEEDMVAFSCC+++GG EK E+D R+
Sbjct: 314 SKPITTLSDILVSRMREKSAENNGKYVAVHLRFEEDMVAFSCCVFDGGEKEKKELDAARE 373
Query: 1258 KSWKGKFKRRDRVIRPDLNRVNGKCPLTPLEVGMMLRGMGFDNNTSIYLASGRIYQPEKH 1437
+ W+GKF R RVIRP R+NGKCPLTPLEVG+MLRGMGF NNT+IYLASGRIY+ EK+
Sbjct: 374 RGWRGKFTRPGRVIRPGAIRMNGKCPLTPLEVGLMLRGMGFSNNTAIYLASGRIYKSEKN 433
Query: 1438 LAPLQEMFPRLYTKESLATPEELAPFQGYSSRMAALDYTVSLLSEVFVTTQGGNFPHFLM 1617
+APL EMFP L TKE+LA+ EELAPF+ +SSRMAA+DYTV + SEVFVTTQGGNFPHFL+
Sbjct: 434 MAPLLEMFPLLQTKETLASDEELAPFKNFSSRMAAIDYTVCVHSEVFVTTQGGNFPHFLL 493
Query: 1618 GHRRFLFGGHAKTVIPDKPKLVLLLQDMEMRWEVFKKEMKLMLGESDRKGVMVPRVRKIN 1797
GHRR+++GGH+KT+ PDK +L +L + W+ K+++ M SD KG+ + R +
Sbjct: 494 GHRRYIYGGHSKTIKPDKRRLAILFDSPRIGWKSLKRQLVNMRTHSDAKGIEMKRANE-- 551
Query: 1798 RKTSIYTYPLPECEC 1842
SIYT+P P+C C
Sbjct: 552 ---SIYTFPCPDCMC 563
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 131
effective length of database: 253,773,515
effective search space used: 158354673360
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)