BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.3.cl.356.Contig1
(2396 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680410.1| similar to copia-like retroelement pol pol... 1130 0.0
ref|NP_195502.1| putative protein; protein id: At4g37890.1 ... 340 8e-92
dbj|BAC41972.1| unknown protein [Arabidopsis thaliana] 338 2e-91
ref|NP_179853.1| copia-like retroelement pol polyprotein; p... 323 6e-90
ref|NP_680467.1| similar to copia-like retroelement pol pol... 256 9e-67
>ref|NP_680410.1| similar to copia-like retroelement pol polyprotein; protein id:
At5g49665.1 [Arabidopsis
thaliana]|gi|8978263|dbj|BAA98154.1| retroelement pol
polyprotein-like [Arabidopsis
thaliana]|gi|23306382|gb|AAN17418.1| Unknown protein
[Arabidopsis thaliana]
Length = 740
Score = 1130 bits (2924), Expect(2) = 0.0
Identities = 583/666 (87%), Positives = 584/666 (87%)
Frame = +3
Query: 279 PRRNKLPTPRSATKSPRLSLAAIXXXXXXXXXXXXXXFRNSFKFRSTCGICLNSVKTGQG 458
P + TPRSATKSPRLSLAAI FRNSFKFRSTCGICLNSVKTGQG
Sbjct: 75 PTAEQTSTPRSATKSPRLSLAAISNPSSPRSPLKLSLFRNSFKFRSTCGICLNSVKTGQG 134
Query: 459 TAKYTAECSHAFHFPCIADYVRKQGKLVCPVCNSIWKDASLLVPHKNATESPLDDSVSVI 638
TAKYTAECSHAFHFPCIADYVRKQGKLVCPVCNSIWKDASLLVPHKNATESPLDDSVSVI
Sbjct: 135 TAKYTAECSHAFHFPCIADYVRKQGKLVCPVCNSIWKDASLLVPHKNATESPLDDSVSVI 194
Query: 639 QEKRVVVTSSPRAKPRPKQSDYSRFYDDDEPLLSPRFVTIPEADENCGGEEEDDVPQFKG 818
QEKRVVVTSSPRAKPRPKQSDYSRFYDDDEPLLSPRFVTIPEADENCGGEEEDDVPQFKG
Sbjct: 195 QEKRVVVTSSPRAKPRPKQSDYSRFYDDDEPLLSPRFVTIPEADENCGGEEEDDVPQFKG 254
Query: 819 FVVDPNPSFAVKTNEIPVNGRDFGNVQVSLLPEAAVVSVGCGYETRAVALRVKAPPPLTA 998
FVVDPNPSFAVKTNEIPVNGRDFGNVQVSLLPEAAVVSVGCGYETRAVALRVKAPPPLTA
Sbjct: 255 FVVDPNPSFAVKTNEIPVNGRDFGNVQVSLLPEAAVVSVGCGYETRAVALRVKAPPPLTA 314
Query: 999 RGGVGRRLLDPSQRAPXXXXXXXXXGGTMNGAKLQMVKRAMRLVISSLGSADRLSIVAVV 1178
RGGVGRRLLDPSQRAP GGTMNGAKLQMVKRAMRLVISSLGSADRLSIVAVV
Sbjct: 315 RGGVGRRLLDPSQRAPVDLVVVVDVGGTMNGAKLQMVKRAMRLVISSLGSADRLSIVAVV 374
Query: 1179 MTVPKRLLPLKRMTEHGKRSAGAVVDGLLCGQGSNTSEALKKASRVLEDRRERNPVASIV 1358
MTVPKRLLPLKRMTEHGKRSAGAVVDGLLCGQGSNTSEALKKASRVLEDRRERNPVASIV
Sbjct: 375 MTVPKRLLPLKRMTEHGKRSAGAVVDGLLCGQGSNTSEALKKASRVLEDRRERNPVASIV 434
Query: 1359 LLTDGQGQLSKVHTNQRSTITNVGSTRFAHIEIPVTEHGFGESGGCSNAPAEEAFAKCIG 1538
LLTDGQGQLSKVHTNQRSTITNVGSTRFAHIEIPVTEHGFGESGGCSNAPAEEAFAKCIG
Sbjct: 435 LLTDGQGQLSKVHTNQRSTITNVGSTRFAHIEIPVTEHGFGESGGCSNAPAEEAFAKCIG 494
Query: 1539 GLLSVVVQDLRIQIRVGSGSGPCEISAIYLCNGRPTLXXXXXXXXRLGDLYAGXXXXXXX 1718
GLLSVVVQDLRIQIRVGSGSGPCEISAIYLCNGRPTL RLGDLYAG
Sbjct: 495 GLLSVVVQDLRIQIRVGSGSGPCEISAIYLCNGRPTLVSSGSGSVRLGDLYAGEERELLV 554
Query: 1719 XXXXPSTATRAYQILSVRGLFKDPSTQEVVYGRDQSLRVPQAVRSSSSPRIERLRSLFIA 1898
PSTATRAYQILSVRGLFKDPSTQEVVYGRDQSLRVPQAVRSSSSPRIERLRSLFIA
Sbjct: 555 ELRVPSTATRAYQILSVRGLFKDPSTQEVVYGRDQSLRVPQAVRSSSSPRIERLRSLFIA 614
Query: 1899 TRAVAESRRLVEYGECTSAYHLLTSARALLGQSGTVEAAEYIKVVEAELVEVQWRGXXXX 2078
TRAVAESRRLVEYGECTSAYHLLTSARALLGQSGTVEAAEYIKVVEAELVEVQWRG
Sbjct: 615 TRAVAESRRLVEYGECTSAYHLLTSARALLGQSGTVEAAEYIKVVEAELVEVQWRGQQLM 674
Query: 2079 XXXXXXXXXXXXRRRGSEREXXXXXXLMDENGEPLTPASAWRXXXXXXXXXXXXXSDLHG 2258
RRRGSERE LMDENGEPLTPASAWR SDLHG
Sbjct: 675 EYQSQHQQQHNQRRRGSERETTTTMTLMDENGEPLTPASAWRAAEKLAKLAMMKKSDLHG 734
Query: 2259 FENARF 2276
FENARF
Sbjct: 735 FENARF 740
Score = 130 bits (326), Expect(2) = 0.0
Identities = 63/81 (77%), Positives = 63/81 (77%)
Frame = +2
Query: 56 MGTGWRRAFCTTAPRNSDATAPDLDKQRTGYNLTPSPSPRSCVKLAFLSGGSNXXXXXXX 235
MGTGWRRAFCTTAPRNSDA APDLDKQRTGYNLTPSPSPRSCVKLAFLSGGSN
Sbjct: 1 MGTGWRRAFCTTAPRNSDAAAPDLDKQRTGYNLTPSPSPRSCVKLAFLSGGSNPSTPRST 60
Query: 236 XXXXXXXXXXDAQTPTAEQTS 298
DAQTPTAEQTS
Sbjct: 61 SSPSLRCRTADAQTPTAEQTS 81
>ref|NP_195502.1| putative protein; protein id: At4g37890.1 [Arabidopsis
thaliana]|gi|7485841|pir||T05616 hypothetical protein
F20D10.10 - Arabidopsis
thaliana|gi|4467095|emb|CAB37529.1| putative protein
[Arabidopsis thaliana]|gi|7270772|emb|CAB80454.1|
putative protein [Arabidopsis thaliana]
Length = 720
Score = 340 bits (871), Expect = 8e-92
Identities = 243/635 (38%), Positives = 342/635 (53%), Gaps = 14/635 (2%)
Frame = +3
Query: 414 STCGICLNSVKTGQGTAKYTAECSHAFHFPCIADYVRKQGKLV-CPVCNSIWKDASLLVP 590
S CGICL S K G+GTA +TAECSH FHFPC+A + L CPVC + W++ SLL
Sbjct: 148 SKCGICLQSAKAGRGTAIFTAECSHTFHFPCVASRAGDRNLLSDCPVCGASWRETSLL-- 205
Query: 591 HKNATESPLDDSVSVIQEKRVVVTSSPRAKPRPKQSDYSRFYDDDEPLLSPR-----FVT 755
PL S S+ + S + + + R Y+DDEPL+S F T
Sbjct: 206 -------PLSLSSSLHESGS---ESDSKIRESKNNNKSLRVYNDDEPLISSPISRTGFNT 255
Query: 756 IPEADENCGGEEEDDVPQFKGFVVD-PNPSFAVKTNEIPVNGRDFGNVQVSLLPEAAVVS 932
IPE++E+ EE++D +FKGF V+ P+P K V G +V V L EAA+V+
Sbjct: 256 IPESNED-EEEEDNDDGEFKGFYVNTPSPLTTKKMLTDSVTG----HVDVKLSSEAAIVA 310
Query: 933 VGCGYETRAVALRVKAPPPLTARGGVGRRLLDPSQRAPXXXXXXXXXGGTMNGAKLQMVK 1112
VG G ET +V +++K+P TAR R+P ++G ++MVK
Sbjct: 311 VGRGNETYSVLMKIKSPSLPTAR------------RSPVDLVTVID----VSGGNIEMVK 354
Query: 1113 RAMRLVISSLGSADRLSIVAVVMTVPKRLLPLKRMTEHGKRSAGAVVDGLLC-GQGSNTS 1289
RAMR VISSL DRLS+V+ + KRL PL+RMT +G+R A +VD + G G + +
Sbjct: 355 RAMRQVISSLRETDRLSMVSFSSS-SKRLTPLRRMTANGRRLARRIVDDISGDGDGMSVN 413
Query: 1290 EALKKASRVLEDRRERNPVASIVLLTDGQGQLSKVHTNQRSTITNVGSTRFAHIEIPVTE 1469
+A+KKA++V+EDRR++N +I +LTD + H Q + V STRF+H+EIP
Sbjct: 414 DAVKKAAKVIEDRRQKNLFTTIFVLTDRNR--NSAHQAQLAQPDFVTSTRFSHLEIPTHT 471
Query: 1470 HGFGESGGCSNAPAEEAFAKCIGGLLSVVVQDLRIQIRVGSGSGPCEISAIYLCNGRPTL 1649
G C++A E+ FAK I LLS+ VQDL + + + SGSG +++++Y +GRP
Sbjct: 472 IWLG---ACNHALPEDVFAKRIKSLLSLSVQDLTLNLGLVSGSGQGKVTSVYSLSGRPVW 528
Query: 1650 XXXXXXXXRLGDLYAGXXXXXXXXXXXPSTATRAYQILSVRGLFKDPSTQEVVYGRDQSL 1829
RLGD+Y PS++ R+ +I++VR DP+TQE+ D++L
Sbjct: 529 LGSGLI--RLGDMYGDEEREVLVELKSPSSS-RSQRIMTVRSRHVDPTTQEIKNYEDRAL 585
Query: 1830 RVPQAVR-SSSSPRIERLRSLFIATRAVAESRRLVEYGECTSAYHLLTSARALLGQSGTV 2006
+P+ SS P I RLR+L ++TRAVAESRRLVE + + A +LTSARALL Q G
Sbjct: 586 MIPRPTTVRSSDPSIARLRNLHVSTRAVAESRRLVEVNDYSGAERMLTSARALLVQYGLS 645
Query: 2007 EAAEYIKVVEAELVEVQWRGXXXXXXXXXXXXXXXXRRRGSEREXXXXXXLMDENGEPLT 2186
+ ++ +EAEL ++ R RG ++ + EPLT
Sbjct: 646 SSDSCLRGLEAELADLN-------------------RLRGRHVAVKSPEPVV-QKSEPLT 685
Query: 2187 PASAWRXXXXXXXXX-----XXXXSDLHGFENARF 2276
P SAWR SDLHGFENARF
Sbjct: 686 PTSAWRAAERLAKVAIMRKHMNRVSDLHGFENARF 720
>dbj|BAC41972.1| unknown protein [Arabidopsis thaliana]
Length = 739
Score = 338 bits (867), Expect = 2e-91
Identities = 243/635 (38%), Positives = 341/635 (53%), Gaps = 14/635 (2%)
Frame = +3
Query: 414 STCGICLNSVKTGQGTAKYTAECSHAFHFPCIADYVRKQGKLV-CPVCNSIWKDASLLVP 590
S CGICL S K G+GTA +TAECSH FHFPC+A + L CPVC + W++ SLL
Sbjct: 167 SKCGICLQSAKAGRGTAIFTAECSHTFHFPCVASRAGDRNLLSDCPVCGASWRETSLL-- 224
Query: 591 HKNATESPLDDSVSVIQEKRVVVTSSPRAKPRPKQSDYSRFYDDDEPLLSPR-----FVT 755
PL S S+ + S + + + R Y+DDEPL+S F T
Sbjct: 225 -------PLSLSSSLHESGS---ESDSKIRESKNNNKSLRVYNDDEPLISSPISRTGFNT 274
Query: 756 IPEADENCGGEEEDDVPQFKGFVVD-PNPSFAVKTNEIPVNGRDFGNVQVSLLPEAAVVS 932
IPE++E+ EE++D +FKGF V+ P+P K V G +V V L EAA+V+
Sbjct: 275 IPESNED-EEEEDNDDGEFKGFYVNTPSPLTTKKMLTDSVTG----HVDVKLSSEAAIVA 329
Query: 933 VGCGYETRAVALRVKAPPPLTARGGVGRRLLDPSQRAPXXXXXXXXXGGTMNGAKLQMVK 1112
VG G ET +V +++K+P TAR R+P ++G + MVK
Sbjct: 330 VGRGNETYSVLMKIKSPSLPTAR------------RSPVDLVTVID----VSGGNIGMVK 373
Query: 1113 RAMRLVISSLGSADRLSIVAVVMTVPKRLLPLKRMTEHGKRSAGAVVDGLLC-GQGSNTS 1289
RAMR VISSL DRLS+V+ + KRL PL+RMT +G+R A +VD + G G + +
Sbjct: 374 RAMRQVISSLRETDRLSMVSFSSS-SKRLTPLRRMTANGRRLARRIVDDISGDGDGMSVN 432
Query: 1290 EALKKASRVLEDRRERNPVASIVLLTDGQGQLSKVHTNQRSTITNVGSTRFAHIEIPVTE 1469
+A+KKA++V+EDRR++N +I +LTD + H Q + V STRF+H+EIP
Sbjct: 433 DAVKKAAKVIEDRRQKNLFTTIFVLTDRNR--NSAHQAQLAQPDFVTSTRFSHLEIPTHT 490
Query: 1470 HGFGESGGCSNAPAEEAFAKCIGGLLSVVVQDLRIQIRVGSGSGPCEISAIYLCNGRPTL 1649
G C++A E+ FAK I LLS+ VQDL + + + SGSG +++++Y +GRP
Sbjct: 491 IWLG---ACNHALPEDVFAKRIKSLLSLSVQDLTLNLGLVSGSGQGKVTSVYSLSGRPVW 547
Query: 1650 XXXXXXXXRLGDLYAGXXXXXXXXXXXPSTATRAYQILSVRGLFKDPSTQEVVYGRDQSL 1829
RLGD+Y PS++ R+ +I++VR DP+TQE+ D++L
Sbjct: 548 LGSGLI--RLGDMYGDEEREVLVELKSPSSS-RSQRIMTVRSRHVDPTTQEIKNYEDRAL 604
Query: 1830 RVPQAVR-SSSSPRIERLRSLFIATRAVAESRRLVEYGECTSAYHLLTSARALLGQSGTV 2006
+P+ SS P I RLR+L ++TRAVAESRRLVE + + A +LTSARALL Q G
Sbjct: 605 MIPRPTTVRSSDPSIARLRNLHVSTRAVAESRRLVEVNDYSGAERMLTSARALLVQYGLS 664
Query: 2007 EAAEYIKVVEAELVEVQWRGXXXXXXXXXXXXXXXXRRRGSEREXXXXXXLMDENGEPLT 2186
+ ++ +EAEL ++ R RG ++ + EPLT
Sbjct: 665 SSDSCLRGLEAELADLN-------------------RLRGRHVAVKSPEPVV-QKSEPLT 704
Query: 2187 PASAWRXXXXXXXXX-----XXXXSDLHGFENARF 2276
P SAWR SDLHGFENARF
Sbjct: 705 PTSAWRAAERLAKVAIMRKHMNRVSDLHGFENARF 739
>ref|NP_179853.1| copia-like retroelement pol polyprotein; protein id: At2g22680.1,
supported by cDNA: gi_20268716 [Arabidopsis
thaliana]|gi|25370697|pir||E84615 copia-like retroelement
pol polyprotein [imported] - Arabidopsis
thaliana|gi|4314365|gb|AAD15576.1| copia-like
retroelement pol polyprotein [Arabidopsis
thaliana]|gi|20268717|gb|AAM14062.1| putative copia-like
retroelement pol polyprotein [Arabidopsis
thaliana]|gi|23296688|gb|AAN13147.1| putative copia-like
retroelement pol polyprotein [Arabidopsis thaliana]
Length = 683
Score = 323 bits (828), Expect(2) = 6e-90
Identities = 239/697 (34%), Positives = 339/697 (48%), Gaps = 35/697 (5%)
Frame = +3
Query: 291 KLPTPRSATKSPRLSLAAIXXXXXXXXXXXXXXFRNSFKFRST----CGICLNSVKTGQG 458
K T T R ++ + ++ +F+ + CGICL SVK+GQG
Sbjct: 83 KTTTTGETTPRNRSLVSLLTPSSSSISPASFTLLKSKLRFKQSSSNKCGICLQSVKSGQG 142
Query: 459 TAKYTAECSHAFHFPCIADYVRKQGKLV--CPVCNSIWKDASLLVPHKNATESPLDDSVS 632
TA +TAECSH FHFPC+ + CPVC S S
Sbjct: 143 TAIFTAECSHTFHFPCVTSRAAANHNRLASCPVCGS-----------------------S 179
Query: 633 VIQEKRVVVTSSPRAKPRPKQSDYSRFYDDDEPLLSPR-----FVTIPEADENCGGEEED 797
++ E R + KP K R Y+DDE L+S F TI E+DEN +
Sbjct: 180 LLPEIRNYAKPESQIKPEIKNKSL-RVYNDDEALISSPISPAGFHTILESDEN------E 232
Query: 798 DVPQFKGFVVD-PNPSFAVKTNEIPVNGRDFGNVQVSLLPEAAVVSVGCGYETRAVALRV 974
D +F GF V+ P+P A + NV V L PE+A+V+ G GYET +V ++V
Sbjct: 233 DCEEFTGFSVNTPSPLTAKLLTD--------RNVDVKLSPESAIVASGKGYETYSVVMKV 284
Query: 975 KAPPPLTARGGVGRRLLDPSQRAPXXXXXXXXXGGTMNGAKLQMVKRAMRLVISSLGSAD 1154
K+PP TARG ++R P G +G KL+M+K+ MR+V+S+L D
Sbjct: 285 KSPPFPTARGF--------ARRVPVDLVAVLDVSGRNSGGKLEMLKQTMRIVLSNLREMD 336
Query: 1155 RLSIVAVVMTVPKRLLPLKRMTEHGKRSAGAVVDGL------------LCGQGSNTSEAL 1298
RLSI+A + KRL PL+RMT +G+RSA +VD + G+G + ++AL
Sbjct: 337 RLSIIAFSSS-SKRLSPLRRMTANGRRSARRIVDIITVPGSVSGVGIDFSGEGMSVNDAL 395
Query: 1299 KKASRVLEDRRERNPVASIVLLTDGQGQLSKVHTNQRSTITNVGSTRFAHIEIPVTEHGF 1478
KKA +VL+DRR++NP ++ +LTD Q + AH IP+
Sbjct: 396 KKAVKVLDDRRQKNPFTAVFVLTDRQAHQV---------------AQLAHSRIPI----- 435
Query: 1479 GESGGCSNAPAEEAFAKCIGGLLSVVVQDLRIQIRVGSGSGPCEISAIYLCNGRPTLXXX 1658
+ S+A E+AFA+ I G LS+ VQDL +Q+ + SG G EI+++Y +GRP
Sbjct: 436 -HTIWLSHAIPEDAFARTINGYLSLSVQDLGLQLGIVSGLGQGEITSVYSLSGRPAWLGT 494
Query: 1659 XXXXXRLGDLYAGXXXXXXXXXXXPS----TATRAYQILSVRGLFKDPSTQEVVYGRDQS 1826
RLGD+YA P T +R+++I++VR + DP+TQE+ D++
Sbjct: 495 GSI--RLGDMYAEEERALLVEIKSPVNNSLTGSRSHKIMTVRSRYVDPTTQELRNPEDRA 552
Query: 1827 LRVPQ--AVRSSSSPRIERLRSLFIATRAVAESRRLVEYGECTSAYHLLTSARALLGQSG 2000
L +P VRSSS+P I RLR+L ++TRAVAESRRL+E + A+ LLTSARALL Q G
Sbjct: 553 LLIPTPLTVRSSSNPNISRLRNLHVSTRAVAESRRLIERNHYSGAHRLLTSARALLVQHG 612
Query: 2001 TVEAAEYIKVVEAELVEVQWRGXXXXXXXXXXXXXXXXRRRGSEREXXXXXXLMDENGEP 2180
+ I+ ++AE+ ++ E+ E
Sbjct: 613 LSSSDACIRGLDAEIADL--------------------------NSVKGRHVAASESLES 646
Query: 2181 LTPASAWRXXXXXXXXX-----XXXXSDLHGFENARF 2276
LTP SAW+ SDLHGFENARF
Sbjct: 647 LTPTSAWKAAERLAKVAMVRKHMNRVSDLHGFENARF 683
Score = 32.7 bits (73), Expect(2) = 6e-90
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Frame = +2
Query: 56 MGTGWRRAFCTTAPRNSDATAPDLD---------KQRTGYNLTPSPSPRS 178
M GWRRAFCT+ P+ ++ D D R G+ TPS +PRS
Sbjct: 1 MLNGWRRAFCTSIPKETNQNDVDDDGLVGLRHKSTSRFGFFSTPS-TPRS 49
>ref|NP_680467.1| similar to copia-like retroelement pol polyprotein; protein id:
At5g65683.1 [Arabidopsis thaliana]
Length = 717
Score = 256 bits (655), Expect = 9e-67
Identities = 216/648 (33%), Positives = 313/648 (47%), Gaps = 27/648 (4%)
Frame = +3
Query: 414 STCGICLNSVKTGQGT---AKYTAECSHAFHFPCIADYVRKQGKLVCPVCNSIWKDASLL 584
S C ICL V + Q A +TAECSH+FH C+ K+ CP C++ W A
Sbjct: 138 SRCAICLQRVNSNQSNSTAAIFTAECSHSFHLSCVNGLEDKR----CPFCSAAWNHA--- 190
Query: 585 VPHKNATESPLDDSVSVIQEKRVVVTSSPRAKPRPKQSDYS---RFYDDDEPLL-SP--- 743
P + +V S P +P ++ R Y+DDEPL SP
Sbjct: 191 ---------PKSNYPAVNNN----FGSDPIRRPEIREIKTGKSLRVYNDDEPLAYSPVSL 237
Query: 744 -RFVTIPEADENCGGEEEDDVPQFKGFVVDPNPSFAVKTNEIPVNGRDFGNVQVSLLPEA 920
+ TI E+DEN E++DD P GF D + + ++ +P GN++V LLPE+
Sbjct: 238 AQINTIHESDENDDVEDDDDFP---GFFRDSS----ITSDMVPSIS---GNLEVKLLPES 287
Query: 921 AVVSVGCGYETRAVALRVKAPPPLTARGGVGRRLLDPSQRAPXXXXXXXXXGGTMNGAKL 1100
AVV G ET V +++KA P ++ + D + + GA L
Sbjct: 288 AVVETGKKKETHVVIMKLKASPSPSS-------ITDAIKARRPSIDLVTVLDLSNGGANL 340
Query: 1101 QMVKRAMRLVISSLGSADRLSIVAVVMTVPKRLLPLKRMTEHGKRSAGAVVDGL-----L 1265
Q VK AMR VIS L DRLSIV V T KRL+PL+RMT G+RSA +VD L
Sbjct: 341 QTVKHAMRSVISLLREMDRLSIV-VFSTGSKRLMPLRRMTAKGRRSARRMVDALGGMETT 399
Query: 1266 CGQGSNTSEALKKASRVLEDRRERNPVASIVLLTDGQGQ---LSKVHTNQRSTITNVGST 1436
G G + ++ALKKA +V+EDRRE+NP SI +L+DGQ Q + K N V +T
Sbjct: 400 GGVGMSVNDALKKAVKVVEDRREKNPSTSIFVLSDGQDQPEAVLKAKLNATRIPFVVSTT 459
Query: 1437 RFAHIEIPVTEHGFGESGGCSNAPAEEAFAKCIGGLLSVVVQDLRIQIRVGSGSGPCEIS 1616
RF+ EIPV G +AP +AF + I LL+V + ++++ + + +GS EIS
Sbjct: 460 RFSRPEIPVHSVYIASPGALLHAPLRDAFTERIASLLNVTLHNVKLNLSLVNGSHLTEIS 519
Query: 1617 AIYLCNGRPTLXXXXXXXXRLGDLYAGXXXXXXXXXXXPSTATRAYQILSVRGLFKDPST 1796
++Y GR ++GDL+A P++++ ++Q++SV+ D T
Sbjct: 520 SVYSLTGR-LENFGSGSVIQVGDLFAEEEREFLVELKVPTSSSGSHQVMSVQSSIVDQMT 578
Query: 1797 -QEVVYGRDQSLRV--PQAVRSSSSPRIERLRSLFIATRAVAESRRLVEYGECTSAYHLL 1967
Q + +++ + PQ+VR SS IERLR+L RAVA+SRRL+E + + AY +L
Sbjct: 579 HQPMTCPKEKRFLIPRPQSVRYVSS-SIERLRNLHSMCRAVADSRRLIEREDLSGAYQVL 637
Query: 1968 TSARALLGQSGTVEAAEYIKVVEAELVEVQWRGXXXXXXXXXXXXXXXXRRRGSEREXXX 2147
T+AR S + + ++ +E EL E+ + R S
Sbjct: 638 TTAR-----SNASHSDDSLRSLEVELNEL-----------------SRIKPRNS------ 669
Query: 2148 XXXLMDENGEPLTPASAWRXXXXXXXXX-----XXXXSDLHGFENARF 2276
++ E LTP SAWR SD+HG ENARF
Sbjct: 670 ILNRTEDKPEQLTPTSAWRAAEKLAKVAIMRKHLNRVSDMHGLENARF 717
Score = 34.7 bits (78), Expect = 7.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 65 GWRRAFCTTAPRNSDATAPDLDKQRTGYNLT--PSPSPRSCVKLAFLSGGS 211
GWR+AFCT+ N D +Q + + T P P+PR K FLS S
Sbjct: 4 GWRKAFCTSVSSNQDK-----PQQHSSLHTTDPPIPTPRFRSKFGFLSNPS 49
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 131
effective length of database: 253,773,515
effective search space used: 169266934505
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)