BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.3.cl.338.Contig1
(1698 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM91100.1| At1g45200 [Arabidopsis thaliana]|gi|25090355... 909 0.0
ref|NP_683384.1| unknown protein; protein id: At1g45198.1 [... 584 e-165
ref|NP_201506.1| unknown protein; protein id: At5g67050.1 [... 351 2e-95
gb|AAL07239.1| unknown protein [Arabidopsis thaliana] 316 8e-85
ref|NP_566484.1| expressed protein; protein id: At3g14360.1... 314 2e-84
>gb|AAM91100.1| At1g45200 [Arabidopsis thaliana]|gi|25090355|gb|AAN72283.1|
At1g45200/At1g45200 [Arabidopsis thaliana]
Length = 479
Score = 909 bits (2348), Expect = 0.0
Identities = 443/474 (93%), Positives = 443/474 (93%)
Frame = +3
Query: 69 MSKTNMKFCNSYFLVDPTKAXXXXXXXXXXXXXXXXARFIDSPPDTLKGFRRSFASRWIL 248
MSKTNMKFCNSYFLVDPTKA ARFIDSPPDTLKGFRRSFASRWIL
Sbjct: 1 MSKTNMKFCNSYFLVDPTKASFLDLLLLLFSSNLTSARFIDSPPDTLKGFRRSFASRWIL 60
Query: 249 ALAIFLQKVLMLLSKPFAFIGQKLTYWLNLLTANGGFFNLILNLMSGKLVKPDKSSATYT 428
ALAIFLQKVLMLLSKPFAFIGQKLTYWLNLLTANGGFFNLILNLMSGKLVKPDKSSATYT
Sbjct: 61 ALAIFLQKVLMLLSKPFAFIGQKLTYWLNLLTANGGFFNLILNLMSGKLVKPDKSSATYT 120
Query: 429 SFIGCSDRRIELDEKINVGSIEYKSMLSIMASKISYESKPYITSVVKNTWKMDLVGNYDF 608
SFIGCSDRRIELDEKINVGSIEYKSMLSIMASKISYESKPYITSVVKNTWKMDLVGNYDF
Sbjct: 121 SFIGCSDRRIELDEKINVGSIEYKSMLSIMASKISYESKPYITSVVKNTWKMDLVGNYDF 180
Query: 609 YNAFQESKLTQAFVFKTSSTNPDLIVVSFRGTEPFEAADWCTDLDLSWYEMKNVGKVHAG 788
YNAFQESKLTQAFVFKTSSTNPDLIVVSFRGTEPFEAADWCTDLDLSWYEMKNVGKVHAG
Sbjct: 181 YNAFQESKLTQAFVFKTSSTNPDLIVVSFRGTEPFEAADWCTDLDLSWYEMKNVGKVHAG 240
Query: 789 FSRALGLQKDGWPKENISLLHQYAYYTIRQMLRDKLGRNKNLKYILTGHSXXXXXXXXXX 968
FSRALGLQKDGWPKENISLLHQYAYYTIRQMLRDKLGRNKNLKYILTGHS
Sbjct: 241 FSRALGLQKDGWPKENISLLHQYAYYTIRQMLRDKLGRNKNLKYILTGHSLGGALAALFP 300
Query: 969 XXXXXHGEDELLDKLEGIYTFGQPRVGDEDFGEFMKGVVKKHGIEYERFVYNNDVVPRVP 1148
HGEDELLDKLEGIYTFGQPRVGDEDFGEFMKGVVKKHGIEYERFVYNNDVVPRVP
Sbjct: 301 AILAIHGEDELLDKLEGIYTFGQPRVGDEDFGEFMKGVVKKHGIEYERFVYNNDVVPRVP 360
Query: 1149 FDDKYLFSYKHYGPCNSFNSLYKGKVREDAPNANYFNLLWLIPQLLTGLWEFIRSFILQF 1328
FDDKYLFSYKHYGPCNSFNSLYKGKVREDAPNANYFNLLWLIPQLLTGLWEFIRSFILQF
Sbjct: 361 FDDKYLFSYKHYGPCNSFNSLYKGKVREDAPNANYFNLLWLIPQLLTGLWEFIRSFILQF 420
Query: 1329 WKGDEYKENWLMRFVRVVGIVFPGGSNHFPFDYVNSTRLGGLVRPPPTTTPEDK 1490
WKGDEYKENWLMRFVRVVGIVFPGGSNHFPFDYVNSTRLGGLVRPPPTTTPEDK
Sbjct: 421 WKGDEYKENWLMRFVRVVGIVFPGGSNHFPFDYVNSTRLGGLVRPPPTTTPEDK 474
>ref|NP_683384.1| unknown protein; protein id: At1g45198.1 [Arabidopsis thaliana]
Length = 300
Score = 584 bits (1505), Expect = e-165
Identities = 277/294 (94%), Positives = 279/294 (94%)
Frame = +3
Query: 609 YNAFQESKLTQAFVFKTSSTNPDLIVVSFRGTEPFEAADWCTDLDLSWYEMKNVGKVHAG 788
++AFQESKLTQAFVFKTSSTNPDLIVVSFRGTEPFEAADWCTDLDLSWYEMKNVGKVHAG
Sbjct: 2 WSAFQESKLTQAFVFKTSSTNPDLIVVSFRGTEPFEAADWCTDLDLSWYEMKNVGKVHAG 61
Query: 789 FSRALGLQKDGWPKENISLLHQYAYYTIRQMLRDKLGRNKNLKYILTGHSXXXXXXXXXX 968
FSRALGLQKDGWPKENISLLHQYAYYTIRQMLRDKLGRNKNLKYILTGHS
Sbjct: 62 FSRALGLQKDGWPKENISLLHQYAYYTIRQMLRDKLGRNKNLKYILTGHSLGGALAALFP 121
Query: 969 XXXXXHGEDELLDKLEGIYTFGQPRVGDEDFGEFMKGVVKKHGIEYERFVYNNDVVPRVP 1148
HGEDELLDKLEGIYTFGQPRVGDEDFGEFMKGVVKKHGIEYERFVYNNDVVPRVP
Sbjct: 122 AILAIHGEDELLDKLEGIYTFGQPRVGDEDFGEFMKGVVKKHGIEYERFVYNNDVVPRVP 181
Query: 1149 FDDKYLFSYKHYGPCNSFNSLYKGKVREDAPNANYFNLLWLIPQLLTGLWEFIRSFILQF 1328
FDDKYLFSYKHYGPCNSFNSLYKGKVREDAPNANYFNLLWLIPQLLTGLWEFIRSFILQF
Sbjct: 182 FDDKYLFSYKHYGPCNSFNSLYKGKVREDAPNANYFNLLWLIPQLLTGLWEFIRSFILQF 241
Query: 1329 WKGDEYKENWLMRFVRVVGIVFPGGSNHFPFDYVNSTRLGGLVRPPPTTTPEDK 1490
WKGDEYKENWLMRFVRVVGIVFPGGSNHFPFDYVNSTRLGGLVRPPPTTTPEDK
Sbjct: 242 WKGDEYKENWLMRFVRVVGIVFPGGSNHFPFDYVNSTRLGGLVRPPPTTTPEDK 295
>ref|NP_201506.1| unknown protein; protein id: At5g67050.1 [Arabidopsis
thaliana]|gi|10177592|dbj|BAB10939.1|
gene_id:K21H1.1~unknown protein [Arabidopsis thaliana]
Length = 487
Score = 351 bits (901), Expect = 2e-95
Identities = 183/423 (43%), Positives = 261/423 (61%), Gaps = 11/423 (2%)
Frame = +3
Query: 201 DTLKGFRRSFASRWILALAIFLQKVLMLLSKPFAFIGQKLTYWLNLLTANGGFFNLILNL 380
D+ + SF RW++ +++ L K+L SK A +G L + LN L+ N F L L
Sbjct: 42 DSSETEEHSFRHRWLIFVSLVLLKLLRFFSKLLALVGSALEFSLNFLS-NNSFSGLFLR- 99
Query: 381 MSGKLVKPDKSSATYTSFIGCSDRRIELDEKINVGSIE-YKSMLSIMASKISYESKPYIT 557
G++V P ++S Y SFIG D R+ LD +N E Y + LSIMASKI+YE+ I
Sbjct: 100 --GEVVMPQRTSENYQSFIGHLDTRVSLDMTLNREDGEKYYAALSIMASKIAYENAARIK 157
Query: 558 SVVKNTWKMDLVGNYDFYNAFQESKLTQAFVFKTSSTNP------DLIVVSFRGTEPFEA 719
VV+N W M +G D++N +QE + TQAF+ T T +VV+FRGTE F +
Sbjct: 158 HVVENHWNMKYLGLVDYWNEYQEKETTQAFIMSTDETTTRSNGQETTVVVAFRGTELFNS 217
Query: 720 ADWCTDLDLSWYEMKNVGKVHAGFSRALGLQKD-GWPKENISLLHQ---YAYYTIRQMLR 887
DWC+D D++W+E+ N+G +H GF +ALGLQ + WPKE +S + AYY+IR L+
Sbjct: 218 EDWCSDFDITWFELPNIGNIHGGFMKALGLQNNCSWPKEPLSNPDRKSPLAYYSIRDSLK 277
Query: 888 DKLGRNKNLKYILTGHSXXXXXXXXXXXXXXXHGEDELLDKLEGIYTFGQPRVGDEDFGE 1067
+ +NKN K++LTGHS H E ELL++++G+YT+GQPRVGD FGE
Sbjct: 278 TLIAQNKNTKFVLTGHSLGGALAILFTAVLVIHHETELLERIQGVYTYGQPRVGDSKFGE 337
Query: 1068 FMKGVVKKHGIEYERFVYNNDVVPRVPFDDKYLFSYKHYGPCNSFNSLYKGKVREDAPNA 1247
FM+ ++K+ I+Y RFVYNND+VPR+P+DDK L +KH+G C ++ Y+ KV + +
Sbjct: 338 FMEKKLEKYNIKYYRFVYNNDIVPRLPYDDKDLM-FKHFGTCIYYDQNYQAKVMREQSDE 396
Query: 1248 NYFNLLWLIPQLLTGLWEFIRSFILQFWKGDEYKENWLMRFVRVVGIVFPGGSNHFPFDY 1427
N+F L +I + + + EFIRSF + KG EY E WL++ R +GI+ PG SNH P DY
Sbjct: 397 NFFLLRGIIKMMWSAILEFIRSFTIVAEKGSEYSEGWLLKGGRALGIIVPGVSNHTPQDY 456
Query: 1428 VNS 1436
NS
Sbjct: 457 KNS 459
>gb|AAL07239.1| unknown protein [Arabidopsis thaliana]
Length = 469
Score = 316 bits (809), Expect = 8e-85
Identities = 166/441 (37%), Positives = 253/441 (56%), Gaps = 37/441 (8%)
Frame = +3
Query: 237 RWILALAIFLQKVLMLLSKPFAFIGQKLTYWLNLLTANGGFFNLILNLMSGKLVKPDKSS 416
RW++ ++I ++K++ LL P F G + ++LNL +ANGGFF L+L L+ K+V P++ S
Sbjct: 20 RWVIVVSILVRKIIRLLRTPMEFTGFVVDFFLNLFSANGGFFGLLLRLIQAKVVIPERGS 79
Query: 417 ATYTSFIGCSDRRIELDEKIN-------VGSIEYKSM-----------LSIMASKISYES 542
T+ S IG D RI L ++ N + S++ + L +MASK++YE+
Sbjct: 80 VTFVSTIGQLDGRISLYKEWNFVEHLEGIDSVDSGRVKIELGSRGLMDLCVMASKLAYEN 139
Query: 543 KPYITSVVKNTWKMDLVGNYDFYNAFQESKLTQAFVFKTSSTNPDLIVVSFRGTEPFEAA 722
+ +VV WKM+LV D +N +Q+ TQ FVF + +LIV+SFRGTEPF+A
Sbjct: 140 AKVVENVVDLHWKMNLVEFLDCWNDYQKQMSTQVFVFTDKQKDANLIVISFRGTEPFDAD 199
Query: 723 DWCTDLDLSWYEMKNVGKVHAGFSRALGL-------------------QKDGWPKENISL 845
DW TD D SWYE+ NVGK+H GF A+GL +++ K ++ +
Sbjct: 200 DWGTDFDYSWYEVPNVGKLHMGFLEAMGLGNRDDTTTFHYNLFEQTSSEEENSKKNHLDM 259
Query: 846 LHQYAYYTIRQMLRDKLGRNKNLKYILTGHSXXXXXXXXXXXXXXXHGEDELLDKLEGIY 1025
+ + AYY +R +L+ L ++N ++++TGHS + E E++ +L G+Y
Sbjct: 260 VERSAYYAVRVILKRLLSEHENARFVVTGHSLGGALAILFPTLLVLNEETEIMKRLLGVY 319
Query: 1026 TFGQPRVGDEDFGEFMKGVVKKHGIEYERFVYNNDVVPRVPFDDKYLFSYKHYGPCNSFN 1205
TFGQPR+G+ + G FMK + + Y R VY ND+VPR+P+DDK F YKH+G C ++
Sbjct: 320 TFGQPRIGNREVGLFMKAQLNQPVDRYFRVVYCNDIVPRLPYDDK-TFLYKHFGLCLFYD 378
Query: 1206 SLYKGKVREDAPNANYFNLLWLIPQLLTGLWEFIRSFILQFWKGDEYKENWLMRFVRVVG 1385
S Y ED P+ N + L + I + +WE +R + + G +YKE W R++G
Sbjct: 379 SFYNETKAEDEPDPNPYGLRYKILGHVIAVWELVRGLTMGYTHGPDYKEGWFRILFRLMG 438
Query: 1386 IVFPGGSNHFPFDYVNSTRLG 1448
+V PG S+H DYVNS RLG
Sbjct: 439 LVIPGLSDHCMTDYVNSVRLG 459
>ref|NP_566484.1| expressed protein; protein id: At3g14360.1 [Arabidopsis
thaliana]|gi|23297781|gb|AAN13024.1| unknown protein
[Arabidopsis thaliana]
Length = 469
Score = 314 bits (805), Expect = 2e-84
Identities = 166/441 (37%), Positives = 252/441 (56%), Gaps = 37/441 (8%)
Frame = +3
Query: 237 RWILALAIFLQKVLMLLSKPFAFIGQKLTYWLNLLTANGGFFNLILNLMSGKLVKPDKSS 416
RW++ ++I ++K++ LL P F G + ++LNL +ANGGFF L+L L+ K+V P++ S
Sbjct: 20 RWVIVVSILVRKIIRLLRTPMEFTGFVVDFFLNLFSANGGFFGLLLRLIQAKVVIPERGS 79
Query: 417 ATYTSFIGCSDRRIELDEKIN-------VGSIEYKSM-----------LSIMASKISYES 542
T+ S IG D RI L ++ N + S++ + L +MASK++YE+
Sbjct: 80 VTFVSTIGQLDGRISLYKEWNFVEHLEGIDSVDSGRVKIELGSRGLMDLCVMASKLAYEN 139
Query: 543 KPYITSVVKNTWKMDLVGNYDFYNAFQESKLTQAFVFKTSSTNPDLIVVSFRGTEPFEAA 722
+ +VV WKM+LV D +N +Q+ TQ FVF + +LIV+SFRGTEPF+A
Sbjct: 140 AKVVENVVDLHWKMNLVEFLDCWNDYQKQMSTQVFVFTDKQKDANLIVISFRGTEPFDAD 199
Query: 723 DWCTDLDLSWYEMKNVGKVHAGFSRALGL-------------------QKDGWPKENISL 845
DW TD D SWYE+ NVGK+H GF A+GL +++ K + +
Sbjct: 200 DWGTDFDYSWYEVPNVGKLHMGFLEAMGLGNRDDTTTFHYNLFEQTSSEEENSKKNLLDM 259
Query: 846 LHQYAYYTIRQMLRDKLGRNKNLKYILTGHSXXXXXXXXXXXXXXXHGEDELLDKLEGIY 1025
+ + AYY +R +L+ L ++N ++++TGHS + E E++ +L G+Y
Sbjct: 260 VERSAYYAVRVILKRLLSEHENARFVVTGHSLGGALAILFPTLLVLNEETEIMKRLLGVY 319
Query: 1026 TFGQPRVGDEDFGEFMKGVVKKHGIEYERFVYNNDVVPRVPFDDKYLFSYKHYGPCNSFN 1205
TFGQPR+G+ + G FMK + + Y R VY ND+VPR+P+DDK F YKH+G C ++
Sbjct: 320 TFGQPRIGNREVGLFMKAQLNQPVDRYFRVVYCNDIVPRLPYDDK-TFLYKHFGLCLFYD 378
Query: 1206 SLYKGKVREDAPNANYFNLLWLIPQLLTGLWEFIRSFILQFWKGDEYKENWLMRFVRVVG 1385
S Y ED P+ N + L + I + +WE +R + + G +YKE W R++G
Sbjct: 379 SFYNETKAEDEPDPNPYGLRYKILGHVIAVWELVRGLTMGYTHGPDYKEGWFRILFRLMG 438
Query: 1386 IVFPGGSNHFPFDYVNSTRLG 1448
+V PG S+H DYVNS RLG
Sbjct: 439 LVIPGLSDHCMTDYVNSVRLG 459
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 128
effective length of database: 257,790,653
effective search space used: 112654515361
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)