BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.29.cl.2953.Contig1
(142 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_683606.1| hypothetical protein; protein id: At3g2938... 32 2.6
>ref|NP_683606.1| hypothetical protein; protein id: At3g29385.1 [Arabidopsis
thaliana]
Length = 218
Score = 32.0 bits (71), Expect = 2.6
Identities = 13/39 (33%), Positives = 29/39 (74%)
Frame = -1
Query: 121 NKKRDKTANDPNKIYRVLIDAYSKAIKNYESDFKVEERT 5
N++ KTA++ ++ + +L++A+++ I+ ES+F+ ERT
Sbjct: 121 NRQTSKTASNQDQQHSLLVNAFNEKIQKLESNFQSLERT 159
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 22
effective length of database: 399,729,529
effective search space used: 9593508696
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)