BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.26.cl.2682.Contig2
(676 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193130.1| adenosylhomocysteinase; protein id: At4g13... 83 3e-15
gb|AAM62888.1| adenosylhomocysteinase [Arabidopsis thaliana] 82 8e-15
emb|CAB09795.1| S-adenosyl-L-homocysteine hydrolase [Arabid... 81 1e-14
dbj|BAA03710.1| cytokinin binding protein CBP57 [Nicotiana ... 80 2e-14
gb|AAK92718.1| putative S-adenosyl-L-homocysteinas protein ... 77 2e-13
>ref|NP_193130.1| adenosylhomocysteinase; protein id: At4g13940.1, supported by cDNA:
16846., supported by cDNA: gi_13358226, supported by
cDNA: gi_14596156, supported by cDNA: gi_15146275,
supported by cDNA: gi_19699157, supported by cDNA:
gi_20148278, supported by cDNA: gi_3088578 [Arabidopsis
thaliana]|gi|6174970|sp|O23255|SAHH_ARATH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine
hydrolase) (AdoHcyase)|gi|7435510|pir||C71400
adenosylhomocysteinase (EC 3.3.1.1) [similarity] -
Arabidopsis thaliana|gi|2244750|emb|CAB10173.1|
adenosylhomocysteinase [Arabidopsis
thaliana]|gi|3088579|gb|AAC14714.1|
S-adenosyl-L-homocysteine hydrolase [Arabidopsis
thaliana]|gi|7268098|emb|CAB78436.1|
adenosylhomocysteinase [Arabidopsis
thaliana]|gi|11762222|gb|AAG40389.1|AF325037_1 AT4g13940
[Arabidopsis thaliana]|gi|14596157|gb|AAK68806.1|
adenosylhomocysteinase [Arabidopsis
thaliana]|gi|15146276|gb|AAK83621.1| AT4g13940/dl3010w
[Arabidopsis thaliana]|gi|19699158|gb|AAL90945.1|
AT4g13940/dl3010w [Arabidopsis
thaliana]|gi|20148279|gb|AAM10030.1|
adenosylhomocysteinase [Arabidopsis
thaliana]|gi|27311597|gb|AAO00764.1|
adenosylhomocysteinase [Arabidopsis thaliana]
Length = 485
Score = 83.2 bits (204), Expect = 3e-15
Identities = 38/41 (92%), Positives = 39/41 (94%)
Frame = +1
Query: 88 KKVPFLHLGKLGARLTKLSKDQSDYVSIPIEGPYKPPHYRY 210
+KV LHLGKLGARLTKLSKDQSDYVSIPIEGPYKPPHYRY
Sbjct: 445 EKVALLHLGKLGARLTKLSKDQSDYVSIPIEGPYKPPHYRY 485
>gb|AAM62888.1| adenosylhomocysteinase [Arabidopsis thaliana]
Length = 485
Score = 81.6 bits (200), Expect = 8e-15
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +1
Query: 88 KKVPFLHLGKLGARLTKLSKDQSDYVSIPIEGPYKPPHYRY 210
+KV LHLGKLGARLTKLSKDQ DYVSIPIEGPYKPPHYRY
Sbjct: 445 EKVALLHLGKLGARLTKLSKDQXDYVSIPIEGPYKPPHYRY 485
>emb|CAB09795.1| S-adenosyl-L-homocysteine hydrolase [Arabidopsis thaliana]
Length = 467
Score = 80.9 bits (198), Expect = 1e-14
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +1
Query: 88 KKVPFLHLGKLGARLTKLSKDQSDYVSIPIEGPYKPPHYRY 210
+KV LHLGKLGARL KLSKDQSDYVSIPIEGPYKPPHYRY
Sbjct: 427 EKVALLHLGKLGARLRKLSKDQSDYVSIPIEGPYKPPHYRY 467
>dbj|BAA03710.1| cytokinin binding protein CBP57 [Nicotiana sylvestris]
Length = 450
Score = 80.1 bits (196), Expect = 2e-14
Identities = 34/41 (82%), Positives = 39/41 (94%)
Frame = +1
Query: 88 KKVPFLHLGKLGARLTKLSKDQSDYVSIPIEGPYKPPHYRY 210
+KV LHLGKLGARLTKLSKDQ+DY+S+P+EGPYKPPHYRY
Sbjct: 410 EKVAALHLGKLGARLTKLSKDQADYISVPVEGPYKPPHYRY 450
>gb|AAK92718.1| putative S-adenosyl-L-homocysteinas protein [Arabidopsis thaliana]
Length = 485
Score = 77.4 bits (189), Expect = 2e-13
Identities = 35/41 (85%), Positives = 38/41 (92%)
Frame = +1
Query: 88 KKVPFLHLGKLGARLTKLSKDQSDYVSIPIEGPYKPPHYRY 210
+KV LHLGKLGARLTKL+KDQSDYVSIP+EGPYKP HYRY
Sbjct: 445 EKVAALHLGKLGARLTKLTKDQSDYVSIPVEGPYKPVHYRY 485
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 119
effective length of database: 269,842,067
effective search space used: 28333417035
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)