BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.26.cl.2674.Contig1
(434 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN31836.1| putative 5-methyltetrahydropteroyltriglutama... 61 6e-12
gb|AAL09712.1| AT5g17920/MPI7_60 [Arabidopsis thaliana] 61 6e-12
ref|NP_197294.1| 5-methyltetrahydropteroyltriglutamate--hom... 61 6e-12
ref|NP_187028.1| putative methionine synthase; protein id: ... 57 1e-10
gb|AAK64167.1| putative methionine synthase [Arabidopsis th... 55 3e-10
>gb|AAN31836.1| putative 5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase [Arabidopsis thaliana]
Length = 765
Score = 61.2 bits (147), Expect(2) = 6e-12
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +2
Query: 47 LKTRKYTEVKPALKNMVDAAKLIRSQLASAK 139
LKTRKYTEVKPALKNMVDAAKLIRSQLASAK
Sbjct: 735 LKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765
Score = 28.9 bits (63), Expect(2) = 6e-12
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 3 AVLDQNILLVNPDC 44
AVL+QNIL VNPDC
Sbjct: 720 AVLEQNILWVNPDC 733
>gb|AAL09712.1| AT5g17920/MPI7_60 [Arabidopsis thaliana]
Length = 765
Score = 61.2 bits (147), Expect(2) = 6e-12
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +2
Query: 47 LKTRKYTEVKPALKNMVDAAKLIRSQLASAK 139
LKTRKYTEVKPALKNMVDAAKLIRSQLASAK
Sbjct: 735 LKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765
Score = 28.9 bits (63), Expect(2) = 6e-12
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 3 AVLDQNILLVNPDC 44
AVL+QNIL VNPDC
Sbjct: 720 AVLEQNILWVNPDC 733
>ref|NP_197294.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase; protein id: At5g17920.1, supported
by cDNA: gi_13877642, supported by cDNA: gi_15081617,
supported by cDNA: gi_15810168, supported by cDNA:
gi_15982742, supported by cDNA: gi_15982784, supported
by cDNA: gi_17978929, supported by cDNA: gi_17979546,
supported by cDNA: gi_20147148, supported by cDNA:
gi_2738247 [Arabidopsis
thaliana]|gi|8134566|sp|O50008|METE_ARATH
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (Vitamin-B12-independent methionine
synthase isozyme) (Cobalamin-independent methionine
synthase isozyme)|gi|2738248|gb|AAC50037.1|
cobalamin-independent methionine synthase [Arabidopsis
thaliana]|gi|10177894|dbj|BAB11226.1|
cobalamin-independent methionine synthase [Arabidopsis
thaliana]|gi|13877643|gb|AAK43899.1|AF370522_1
cobalamin-independent methionine synthase [Arabidopsis
thaliana]|gi|15081618|gb|AAK82464.1| AT5g17920/MPI7_60
[Arabidopsis thaliana]|gi|15810169|gb|AAL06986.1|
AT5g17920/MPI7_60 [Arabidopsis
thaliana]|gi|15982785|gb|AAL09740.1| AT5g17920/MPI7_60
[Arabidopsis thaliana]|gi|17978930|gb|AAL47432.1|
AT5g17920/MPI7_60 [Arabidopsis
thaliana]|gi|17979547|gb|AAL50108.1| AT5g17920/MPI7_60
[Arabidopsis thaliana]|gi|20147149|gb|AAM10291.1|
AT5g17920/MPI7_60 [Arabidopsis thaliana]
Length = 765
Score = 61.2 bits (147), Expect(2) = 6e-12
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +2
Query: 47 LKTRKYTEVKPALKNMVDAAKLIRSQLASAK 139
LKTRKYTEVKPALKNMVDAAKLIRSQLASAK
Sbjct: 735 LKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765
Score = 28.9 bits (63), Expect(2) = 6e-12
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 3 AVLDQNILLVNPDC 44
AVL+QNIL VNPDC
Sbjct: 720 AVLEQNILWVNPDC 733
>ref|NP_187028.1| putative methionine synthase; protein id: At3g03780.2, supported by
cDNA: 111720., supported by cDNA: gi_14532771
[Arabidopsis
thaliana]|gi|6006863|gb|AAF00639.1|AC009540_16 putative
methionine synthase [Arabidopsis
thaliana]|gi|21536794|gb|AAM61126.1| putative methionine
synthase [Arabidopsis
thaliana]|gi|23297275|gb|AAN12930.1| putative methionine
synthase [Arabidopsis thaliana]
Length = 765
Score = 56.6 bits (135), Expect(2) = 1e-10
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = +2
Query: 47 LKTRKYTEVKPALKNMVDAAKLIRSQLASAK 139
LKTRKYTEVKPALK MVDAAKLIRSQL SAK
Sbjct: 735 LKTRKYTEVKPALKAMVDAAKLIRSQLGSAK 765
Score = 28.9 bits (63), Expect(2) = 1e-10
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 3 AVLDQNILLVNPDC 44
AVL+QNIL VNPDC
Sbjct: 720 AVLEQNILWVNPDC 733
>gb|AAK64167.1| putative methionine synthase [Arabidopsis thaliana]
Length = 765
Score = 55.5 bits (132), Expect(2) = 3e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +2
Query: 47 LKTRKYTEVKPALKNMVDAAKLIRSQLASAK 139
LKTRKYTEVKPALK MVDAAKLIRSQL +AK
Sbjct: 735 LKTRKYTEVKPALKAMVDAAKLIRSQLGNAK 765
Score = 28.9 bits (63), Expect(2) = 3e-10
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 3 AVLDQNILLVNPDC 44
AVL+QNIL VNPDC
Sbjct: 720 AVLEQNILWVNPDC 733
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 120
effective length of database: 268,503,021
effective search space used: 6444072504
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)