BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.26.cl.2668.Contig1
(637 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188285.1| kinesin-related protein TBK5, putative; pr... 422 e-117
dbj|BAB02754.1| contains similarity to kinesin protein~gene... 422 e-117
gb|AAK70904.1|AC087551_3 kinesin-like protein [Oryza sativa] 193 1e-48
gb|AAK91819.1|AF272756_1 kinesin heavy chain [Zea mays] 183 1e-45
dbj|BAB40710.1| BY-2 kinesin-like protein 10 [Nicotiana tab... 142 3e-33
>ref|NP_188285.1| kinesin-related protein TBK5, putative; protein id: At3g16630.1,
supported by cDNA: gi_15810128 [Arabidopsis
thaliana]|gi|15810129|gb|AAL07208.1| putative kinesin
protein [Arabidopsis thaliana]
Length = 794
Score = 422 bits (1084), Expect = e-117
Identities = 208/208 (100%), Positives = 208/208 (100%)
Frame = -3
Query: 626 ECIRALDNDQLHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV 447
ECIRALDNDQLHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV
Sbjct: 464 ECIRALDNDQLHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV 523
Query: 446 KSLSKSGNSKKDQTANSMPPVNKDPLLGPNDVEDVFEPPQEVNVPETRRRVVEKDSNSST 267
KSLSKSGNSKKDQTANSMPPVNKDPLLGPNDVEDVFEPPQEVNVPETRRRVVEKDSNSST
Sbjct: 524 KSLSKSGNSKKDQTANSMPPVNKDPLLGPNDVEDVFEPPQEVNVPETRRRVVEKDSNSST 583
Query: 266 SGIDFRQPTNYREESGIPSFSMDKGRSEPNSSFAGSTSQRNNISSYPQETSDREEKVKKV 87
SGIDFRQPTNYREESGIPSFSMDKGRSEPNSSFAGSTSQRNNISSYPQETSDREEKVKKV
Sbjct: 584 SGIDFRQPTNYREESGIPSFSMDKGRSEPNSSFAGSTSQRNNISSYPQETSDREEKVKKV 643
Query: 86 SPPRGKGLREEKPDRPQNWSKRDVSSSD 3
SPPRGKGLREEKPDRPQNWSKRDVSSSD
Sbjct: 644 SPPRGKGLREEKPDRPQNWSKRDVSSSD 671
>dbj|BAB02754.1| contains similarity to kinesin protein~gene_id:MGL6.9 [Arabidopsis
thaliana]
Length = 799
Score = 422 bits (1084), Expect = e-117
Identities = 208/208 (100%), Positives = 208/208 (100%)
Frame = -3
Query: 626 ECIRALDNDQLHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV 447
ECIRALDNDQLHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV
Sbjct: 469 ECIRALDNDQLHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV 528
Query: 446 KSLSKSGNSKKDQTANSMPPVNKDPLLGPNDVEDVFEPPQEVNVPETRRRVVEKDSNSST 267
KSLSKSGNSKKDQTANSMPPVNKDPLLGPNDVEDVFEPPQEVNVPETRRRVVEKDSNSST
Sbjct: 529 KSLSKSGNSKKDQTANSMPPVNKDPLLGPNDVEDVFEPPQEVNVPETRRRVVEKDSNSST 588
Query: 266 SGIDFRQPTNYREESGIPSFSMDKGRSEPNSSFAGSTSQRNNISSYPQETSDREEKVKKV 87
SGIDFRQPTNYREESGIPSFSMDKGRSEPNSSFAGSTSQRNNISSYPQETSDREEKVKKV
Sbjct: 589 SGIDFRQPTNYREESGIPSFSMDKGRSEPNSSFAGSTSQRNNISSYPQETSDREEKVKKV 648
Query: 86 SPPRGKGLREEKPDRPQNWSKRDVSSSD 3
SPPRGKGLREEKPDRPQNWSKRDVSSSD
Sbjct: 649 SPPRGKGLREEKPDRPQNWSKRDVSSSD 676
>gb|AAK70904.1|AC087551_3 kinesin-like protein [Oryza sativa]
Length = 800
Score = 193 bits (491), Expect = 1e-48
Identities = 114/219 (52%), Positives = 140/219 (63%), Gaps = 16/219 (7%)
Frame = -3
Query: 626 ECIRALDNDQLHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV 447
ECIRALDNDQ+HIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV
Sbjct: 454 ECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV 513
Query: 446 KSLSKSGNSKKDQTANSMPPVNKDPLLGPN-----DVEDVFEPPQEVNVPETRRRVVEKD 282
KSLSK N++K+Q P +KD P+ + E++ QE ET R+ E
Sbjct: 514 KSLSKGSNTRKEQPTGPTIPSSKDSSSAPSYPMPIETEEIANQIQEKRPVETSRKAAENF 573
Query: 281 SNSSTSGIDFRQPTNYREESGIPSFSMDKGRSEPNSSFAGS------TSQRNNISSYPQE 120
+++S+ D R P S IPS+S ++G+ E SS S R + +S PQ
Sbjct: 574 TSNSSMEPD-RNPV-----SMIPSYS-NRGKEENGSSGLNDRERVDLNSSRISYNSKPQS 626
Query: 119 TS-----DREEKVKKVSPPRGKGLREEKPDRPQNWSKRD 18
EEKV KVSPPR K R++KP+R N++K+D
Sbjct: 627 VQSSANLQEEEKVTKVSPPRRKAYRDDKPERQSNYAKKD 665
>gb|AAK91819.1|AF272756_1 kinesin heavy chain [Zea mays]
Length = 430
Score = 183 bits (465), Expect = 1e-45
Identities = 109/215 (50%), Positives = 139/215 (63%), Gaps = 12/215 (5%)
Frame = -3
Query: 626 ECIRALDNDQLHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV 447
ECIRALDNDQ+HIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV
Sbjct: 95 ECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV 154
Query: 446 KSLSKSGNSKKDQ-----TANSMPPVNKDPLLGPNDVEDVFEPPQEVNVPETRRRVVEKD 282
KSLSK GN++K+Q T +S + P + E++ QE +T R+ E
Sbjct: 155 KSLSKGGNTRKEQPTGPTTTSSRESSSAPSYSLPAEAEEIPNQIQEKRPVDTYRKGTENF 214
Query: 281 SNSSTSGID---FRQPTNY----REESGIPSFSMDKGRSEPNSSFAGSTSQRNNISSYPQ 123
+++ ++ D F NY RE++G S D+ R + S+ TS+ + +
Sbjct: 215 TSNPSAEPDRNSFSMVPNYSNKGREDNGAAS-GNDRERYDLKSTQTAYTSKAQLVQN--- 270
Query: 122 ETSDREEKVKKVSPPRGKGLREEKPDRPQNWSKRD 18
T+ +EEKV KVSPPR K +E+K DR N+ K+D
Sbjct: 271 STNTQEEKVTKVSPPRRKAYKEDKSDRQGNYVKKD 305
>dbj|BAB40710.1| BY-2 kinesin-like protein 10 [Nicotiana tabacum]
Length = 703
Score = 142 bits (359), Expect = 3e-33
Identities = 69/78 (88%), Positives = 74/78 (94%)
Frame = -3
Query: 626 ECIRALDNDQLHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV 447
ECIRALDNDQ HIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV
Sbjct: 448 ECIRALDNDQNHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRV 507
Query: 446 KSLSKSGNSKKDQTANSM 393
KSLSK NSKKD +++++
Sbjct: 508 KSLSKGNNSKKDVSSSTL 525
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 25219843509
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)