BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.26.cl.2644.Contig1
(1357 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197294.1| 5-methyltetrahydropteroyltriglutamate--hom... 836 0.0
gb|AAL09712.1| AT5g17920/MPI7_60 [Arabidopsis thaliana] 833 0.0
gb|AAN31836.1| putative 5-methyltetrahydropteroyltriglutama... 831 0.0
ref|NP_187028.1| putative methionine synthase; protein id: ... 793 0.0
gb|AAK64167.1| putative methionine synthase [Arabidopsis th... 793 0.0
>ref|NP_197294.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase; protein id: At5g17920.1, supported
by cDNA: gi_13877642, supported by cDNA: gi_15081617,
supported by cDNA: gi_15810168, supported by cDNA:
gi_15982742, supported by cDNA: gi_15982784, supported by
cDNA: gi_17978929, supported by cDNA: gi_17979546,
supported by cDNA: gi_20147148, supported by cDNA:
gi_2738247 [Arabidopsis
thaliana]|gi|8134566|sp|O50008|METE_ARATH
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (Vitamin-B12-independent methionine
synthase isozyme) (Cobalamin-independent methionine
synthase isozyme)|gi|2738248|gb|AAC50037.1|
cobalamin-independent methionine synthase [Arabidopsis
thaliana]|gi|10177894|dbj|BAB11226.1|
cobalamin-independent methionine synthase [Arabidopsis
thaliana]|gi|13877643|gb|AAK43899.1|AF370522_1
cobalamin-independent methionine synthase [Arabidopsis
thaliana]|gi|15081618|gb|AAK82464.1| AT5g17920/MPI7_60
[Arabidopsis thaliana]|gi|15810169|gb|AAL06986.1|
AT5g17920/MPI7_60 [Arabidopsis
thaliana]|gi|15982785|gb|AAL09740.1| AT5g17920/MPI7_60
[Arabidopsis thaliana]|gi|17978930|gb|AAL47432.1|
AT5g17920/MPI7_60 [Arabidopsis
thaliana]|gi|17979547|gb|AAL50108.1| AT5g17920/MPI7_60
[Arabidopsis thaliana]|gi|20147149|gb|AAM10291.1|
AT5g17920/MPI7_60 [Arabidopsis thaliana]
Length = 765
Score = 836 bits (2159), Expect = 0.0
Identities = 425/452 (94%), Positives = 425/452 (94%)
Frame = -1
Query: 1357 DLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVST 1178
DLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVST
Sbjct: 267 DLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVST 326
Query: 1177 SCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEXXXXXXXXXXXX 998
SCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE
Sbjct: 327 SCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEALFSANAAALAS 386
Query: 997 XXXSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVEL 818
SPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVEL
Sbjct: 387 RRSSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVEL 446
Query: 817 RRVRREYKAKKVSEEDYXXXXXXXXXXXVDLQEELDIDVLVHGEPERNDMVEYFGEQLSG 638
RRVRREYKAKKVSEEDY VDLQEELDIDVLVHGEPERNDMVEYFGEQLSG
Sbjct: 447 RRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSG 506
Query: 637 FAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILN 458
FAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILN
Sbjct: 507 FAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILN 566
Query: 457 WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDC 278
WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLD
Sbjct: 567 WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDW 626
Query: 277 AVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG 98
AVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG
Sbjct: 627 AVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG 686
Query: 97 VKYGAGIGPGVYDIHSPRIPSSEEIADRVNKM 2
VKYGAGIGPGVYDIHSPRIPSSEEIADRVNKM
Sbjct: 687 VKYGAGIGPGVYDIHSPRIPSSEEIADRVNKM 718
>gb|AAL09712.1| AT5g17920/MPI7_60 [Arabidopsis thaliana]
Length = 765
Score = 833 bits (2152), Expect = 0.0
Identities = 424/452 (93%), Positives = 424/452 (93%)
Frame = -1
Query: 1357 DLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVST 1178
DLV GTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVST
Sbjct: 267 DLVLGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVST 326
Query: 1177 SCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEXXXXXXXXXXXX 998
SCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE
Sbjct: 327 SCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEALFSANAAALAS 386
Query: 997 XXXSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVEL 818
SPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVEL
Sbjct: 387 RRSSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVEL 446
Query: 817 RRVRREYKAKKVSEEDYXXXXXXXXXXXVDLQEELDIDVLVHGEPERNDMVEYFGEQLSG 638
RRVRREYKAKKVSEEDY VDLQEELDIDVLVHGEPERNDMVEYFGEQLSG
Sbjct: 447 RRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSG 506
Query: 637 FAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILN 458
FAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILN
Sbjct: 507 FAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILN 566
Query: 457 WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDC 278
WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLD
Sbjct: 567 WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDW 626
Query: 277 AVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG 98
AVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG
Sbjct: 627 AVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG 686
Query: 97 VKYGAGIGPGVYDIHSPRIPSSEEIADRVNKM 2
VKYGAGIGPGVYDIHSPRIPSSEEIADRVNKM
Sbjct: 687 VKYGAGIGPGVYDIHSPRIPSSEEIADRVNKM 718
>gb|AAN31836.1| putative 5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase [Arabidopsis thaliana]
Length = 765
Score = 831 bits (2147), Expect = 0.0
Identities = 423/452 (93%), Positives = 424/452 (93%)
Frame = -1
Query: 1357 DLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVST 1178
DLVRGTKTLDLVKAGFPEGKYLFAGVVD RNIWANDFAASLSTLQALEGIVGKDKLVVST
Sbjct: 267 DLVRGTKTLDLVKAGFPEGKYLFAGVVDRRNIWANDFAASLSTLQALEGIVGKDKLVVST 326
Query: 1177 SCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEXXXXXXXXXXXX 998
SCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDE
Sbjct: 327 SCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEALFSANAAALAS 386
Query: 997 XXXSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVEL 818
SPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFP+TVEL
Sbjct: 387 RRSSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPRTVEL 446
Query: 817 RRVRREYKAKKVSEEDYXXXXXXXXXXXVDLQEELDIDVLVHGEPERNDMVEYFGEQLSG 638
RRVRREYKAKKVSEEDY VDLQEELDIDVLVHGEPERNDMVEYFGEQLSG
Sbjct: 447 RRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSG 506
Query: 637 FAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILN 458
FAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILN
Sbjct: 507 FAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILN 566
Query: 457 WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDC 278
WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLD
Sbjct: 567 WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDW 626
Query: 277 AVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG 98
AVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG
Sbjct: 627 AVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG 686
Query: 97 VKYGAGIGPGVYDIHSPRIPSSEEIADRVNKM 2
VKYGAGIGPGVYDIHSPRIPSSEEIADRVNKM
Sbjct: 687 VKYGAGIGPGVYDIHSPRIPSSEEIADRVNKM 718
>ref|NP_187028.1| putative methionine synthase; protein id: At3g03780.2, supported by
cDNA: 111720., supported by cDNA: gi_14532771
[Arabidopsis
thaliana]|gi|6006863|gb|AAF00639.1|AC009540_16 putative
methionine synthase [Arabidopsis
thaliana]|gi|21536794|gb|AAM61126.1| putative methionine
synthase [Arabidopsis
thaliana]|gi|23297275|gb|AAN12930.1| putative methionine
synthase [Arabidopsis thaliana]
Length = 765
Score = 793 bits (2049), Expect = 0.0
Identities = 397/452 (87%), Positives = 415/452 (90%)
Frame = -1
Query: 1357 DLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVST 1178
DLVRGTKT+DL+K+GFP+GKYLFAGVVDGRNIWAND AASL TLQ+LEG+VGKDKLVVST
Sbjct: 267 DLVRGTKTIDLIKSGFPQGKYLFAGVVDGRNIWANDLAASLITLQSLEGVVGKDKLVVST 326
Query: 1177 SCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEXXXXXXXXXXXX 998
SCSLLHTAVDLINETKLD EIKSWLAFAAQKVVEV+ALAKALAGQ +E
Sbjct: 327 SCSLLHTAVDLINETKLDAEIKSWLAFAAQKVVEVDALAKALAGQTNESFFTANADALSS 386
Query: 997 XXXSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVEL 818
SPRVTNE VQKAAAALKGSDHRR T VSARLDAQQKKLNLPILPTTTIGSFPQTVEL
Sbjct: 387 RRSSPRVTNESVQKAAAALKGSDHRRTTEVSARLDAQQKKLNLPILPTTTIGSFPQTVEL 446
Query: 817 RRVRREYKAKKVSEEDYXXXXXXXXXXXVDLQEELDIDVLVHGEPERNDMVEYFGEQLSG 638
RRVRREYKAKK+SEEDY VD+QE+LDIDVLVHGEPERNDMVEYFGEQLSG
Sbjct: 447 RRVRREYKAKKISEEDYVKAIKEEIKKVVDIQEDLDIDVLVHGEPERNDMVEYFGEQLSG 506
Query: 637 FAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILN 458
FAFTANGWVQSYGSRCVKPPVIYGDVSRPK MTVFWS+ AQSMT RPMKGMLTGPVTILN
Sbjct: 507 FAFTANGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSSTAQSMTKRPMKGMLTGPVTILN 566
Query: 457 WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDC 278
WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRK+EH+FYLD
Sbjct: 567 WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKAEHSFYLDW 626
Query: 277 AVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG 98
AVHSFRITNCGVQDSTQIHTHMCYS+FNDIIHSIIDMDADVITIENSRSDEKLLSVFREG
Sbjct: 627 AVHSFRITNCGVQDSTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG 686
Query: 97 VKYGAGIGPGVYDIHSPRIPSSEEIADRVNKM 2
VKYGAGIGPGVYDIHSPRIPS++EIADR+NKM
Sbjct: 687 VKYGAGIGPGVYDIHSPRIPSTDEIADRINKM 718
>gb|AAK64167.1| putative methionine synthase [Arabidopsis thaliana]
Length = 765
Score = 793 bits (2049), Expect = 0.0
Identities = 397/452 (87%), Positives = 415/452 (90%)
Frame = -1
Query: 1357 DLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVST 1178
DLVRGTKT+DL+K+GFP+GKYLFAGVVDGRNIWAND AASL TLQ+LEG+VGKDKLVVST
Sbjct: 267 DLVRGTKTIDLIKSGFPQGKYLFAGVVDGRNIWANDLAASLITLQSLEGVVGKDKLVVST 326
Query: 1177 SCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEXXXXXXXXXXXX 998
SCSLLHTAVDLINETKLD EIKSWLAFAAQKVVEV+ALAKALAGQ +E
Sbjct: 327 SCSLLHTAVDLINETKLDAEIKSWLAFAAQKVVEVDALAKALAGQTNESFFTANADALSS 386
Query: 997 XXXSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVEL 818
SPRVTNE VQKAAAALKGSDHRR T VSARLDAQQKKLNLPILPTTTIGSFPQTVEL
Sbjct: 387 RRSSPRVTNESVQKAAAALKGSDHRRTTEVSARLDAQQKKLNLPILPTTTIGSFPQTVEL 446
Query: 817 RRVRREYKAKKVSEEDYXXXXXXXXXXXVDLQEELDIDVLVHGEPERNDMVEYFGEQLSG 638
RRVRREYKAKK+SEEDY VD+QE+LDIDVLVHGEPERNDMVEYFGEQLSG
Sbjct: 447 RRVRREYKAKKISEEDYVKAIKEEIKKVVDIQEDLDIDVLVHGEPERNDMVEYFGEQLSG 506
Query: 637 FAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILN 458
FAFTANGWVQSYGSRCVKPPVIYGDVSRPK MTVFWS+ AQSMT RPMKGMLTGPVTILN
Sbjct: 507 FAFTANGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSSTAQSMTKRPMKGMLTGPVTILN 566
Query: 457 WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDC 278
WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRK+EH+FYLD
Sbjct: 567 WSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKAEHSFYLDW 626
Query: 277 AVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG 98
AVHSFRITNCGVQDSTQIHTHMCYS+FNDIIHSIIDMDADVITIENSRSDEKLLSVFREG
Sbjct: 627 AVHSFRITNCGVQDSTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREG 686
Query: 97 VKYGAGIGPGVYDIHSPRIPSSEEIADRVNKM 2
VKYGAGIGPGVYDIHSPRIPS++EIADR+NKM
Sbjct: 687 VKYGAGIGPGVYDIHSPRIPSTDEIADRINKM 718
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 126
effective length of database: 260,468,745
effective search space used: 84652342125
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)