BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.20.cl.2029.Contig1
(1365 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF87004.1|AC005292_13 F26F24.30 [Arabidopsis thaliana] 42 0.029
ref|NP_766180.1| expressed sequence AI450757 [Mus musculus]... 39 0.24
ref|NP_702646.1| hypothetical protein [Plasmodium falciparu... 38 0.32
dbj|BAC29709.1| unnamed protein product [Mus musculus] 37 0.54
gb|AAG45105.1|AF308810_1 gravin-like [Xenopus laevis] 37 0.54
>gb|AAF87004.1|AC005292_13 F26F24.30 [Arabidopsis thaliana]
Length = 133
Score = 41.6 bits (96), Expect = 0.029
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +3
Query: 765 LLVSRSDSFSCRLQSSVCCELYGLGPCLYGLDLIEVSLLHWCLT 896
LL S S S R SV EL PCLY DLIE+S +HW ++
Sbjct: 81 LLSFLSGSISSRFSFSVWSELIWFSPCLYSKDLIEISSVHWLVS 124
>ref|NP_766180.1| expressed sequence AI450757 [Mus
musculus]|gi|26329009|dbj|BAC28243.1| unnamed protein
product [Mus musculus]
Length = 494
Score = 38.5 bits (88), Expect = 0.24
Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 9/221 (4%)
Frame = -2
Query: 1013 TNKENQSIHTSKNGRRLEIPHNFWKRRNRSKQNQDWFTPSKTPMQKRDLDQV*TVETRTE 834
T +++S S + R+ + + NRS+ Q SK+P +KR + E R
Sbjct: 199 TRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSR----ERRKS 254
Query: 833 PIQFATNRRLETARERIGSRNKQTRQDIE*ARVQDTRPQK---------TENKVDSINAT 681
+ + + + RE++ R K+ ++ E R +D K E + D
Sbjct: 255 RSRSRSRDKRKDTREKVKERVKEKEREKEREREKDREKDKERGKNKDKDREKEKDHEKER 314
Query: 680 NKPTMKTKG*EPKREMKRTRLTKAQNPIMRQLTLKYRCTVATLSQRRSQTTNNISRRHNF 501
+K K + + +RE R++ T + ++ R A+ RRS++T+ RR
Sbjct: 315 DKEKEKEQDKDKEREKDRSKETDEKRKKEKKSRTPPRSYNAS---RRSRSTSRERRRRRS 371
Query: 500 RLQPSSETRSARTKEKPIIFSKQRKGSSDRTKPSTNQSPQR 378
R S +RS RT + S + R K + +R
Sbjct: 372 R----SSSRSPRTSKTVKRKSSRSPSPRGRNKKEKKREKER 408
>ref|NP_702646.1| hypothetical protein [Plasmodium falciparum
3D7]|gi|23497833|gb|AAN37370.1|AE014828_49 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1263
Score = 38.1 bits (87), Expect = 0.32
Identities = 39/187 (20%), Positives = 76/187 (39%)
Frame = -2
Query: 941 KRRNRSKQNQDWFTPSKTPMQKRDLDQV*TVETRTEPIQFATNRRLETARERIGSRNKQT 762
K +N K+N+D K+ MQ + + ++ TN+ + ++G+ KQ
Sbjct: 501 KIKNEKKKNEDDNQNKKSNMQDNN-----------KGLKVTTNKT--NLKNKLGNNTKQI 547
Query: 761 RQDIE*ARVQDTRPQKTENKVDSINATNKPTMKTKG*EPKREMKRTRLTKAQNPIMRQLT 582
+Q +++ K +N DS N T KT + K E ++ K NP M +
Sbjct: 548 KQGAN-PFIENDVSDKKDNLQDSNKGLNVTTNKTND-KTKLEDNTKQIKKGTNPFMDEDE 605
Query: 581 LKYRCTVATLSQRRSQTTNNISRRHNFRLQPSSETRSARTKEKPIIFSKQRKGSSDRTKP 402
L+ + + +++ N N + PSS+ ++ S+ ++ S D+T
Sbjct: 606 LEELLRLEREEKIKNEKKKNEDDNQNKKSNPSSQNKTN---------SQNKQNSQDKTNK 656
Query: 401 STNQSPQ 381
+ Q
Sbjct: 657 QSKLDTQ 663
>dbj|BAC29709.1| unnamed protein product [Mus musculus]
Length = 400
Score = 37.4 bits (85), Expect = 0.54
Identities = 45/195 (23%), Positives = 82/195 (41%), Gaps = 9/195 (4%)
Frame = -2
Query: 1013 TNKENQSIHTSKNGRRLEIPHNFWKRRNRSKQNQDWFTPSKTPMQKRDLDQV*TVETRTE 834
T +++S S + R+ + + NRS+ Q SK+P +KR + E R
Sbjct: 199 TRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSR----ERRKS 254
Query: 833 PIQFATNRRLETARERIGSRNKQTRQDIE*ARVQDTRPQK---------TENKVDSINAT 681
+ + + + RE++ R K+ ++ E R +D K E + D
Sbjct: 255 RSRSRSRDKRKDTREKVKERVKEKEREKEREREKDREKDKERGKNKDKDREKEKDHEKER 314
Query: 680 NKPTMKTKG*EPKREMKRTRLTKAQNPIMRQLTLKYRCTVATLSQRRSQTTNNISRRHNF 501
+K K + + +RE R++ T + ++ R A+ RRS++T+ RR
Sbjct: 315 DKEKEKEQDKDKEREKDRSKETDEKRKKEKKSRTPPRSYNAS---RRSRSTSRERRRRRS 371
Query: 500 RLQPSSETRSARTKE 456
R S +RS RT +
Sbjct: 372 R----SSSRSPRTSK 382
>gb|AAG45105.1|AF308810_1 gravin-like [Xenopus laevis]
Length = 2471
Score = 37.4 bits (85), Expect = 0.54
Identities = 37/163 (22%), Positives = 76/163 (45%), Gaps = 11/163 (6%)
Frame = -2
Query: 842 RTEPIQFATNRRLETARERIGSRNKQTRQDIE*ARV---QDTRPQKTENKVDSINATNKP 672
++EP+Q T ++ + E G+ N + + D+ V +DT+ + +++ D I T+K
Sbjct: 93 KSEPVQLLTVKQEKV--EVNGTENHEKQNDVSGENVLETEDTKEVEKQSETDPIIQTSKT 150
Query: 671 TMKTKG*EPKREMKRTRLTKAQ--------NPIMRQLTLKYRCTVATLSQRRSQTTNNIS 516
+ G +PK E + T+L + Q NP++ + T + L + +Q +
Sbjct: 151 REEVSGEKPKSE-EETKLEEEQVKTPESPTNPLVAE-------TSSPLKKFFTQGWAGLR 202
Query: 515 RRHNFRLQPSSETRSARTKEKPIIFSKQRKGSSDRTKPSTNQS 387
++ +FR S+ + EK II ++ K S + K ++
Sbjct: 203 KKTSFR---KSKEEDHQEVEKYIISEEKEKSDSQQVKEEDGEN 242
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 126
effective length of database: 260,468,745
effective search space used: 85433748360
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)