BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.2.cl.247.Contig1
(2457 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197715.1| putative protein; protein id: At5g23240.1 ... 365 0.0
dbj|BAC42598.1| unknown protein [Arabidopsis thaliana] 365 e-156
ref|NP_197714.1| putative protein; protein id: At5g23230.1 ... 326 1e-90
ref|NP_197713.1| putative protein; protein id: At5g23220.1 ... 283 5e-77
dbj|BAC43021.1| unknown protein [Arabidopsis thaliana] 125 2e-27
>ref|NP_197715.1| putative protein; protein id: At5g23240.1 [Arabidopsis
thaliana]|gi|10177813|dbj|BAB11179.1|
gb|AAD21732.1~gene_id:MKD15.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 465
Score = 365 bits (936), Expect(3) = 0.0
Identities = 202/287 (70%), Positives = 215/287 (74%), Gaps = 3/287 (1%)
Frame = -1
Query: 1848 EQAKLEELRGYTGKPIYSVWCGPETEQRAAFVDEVKCVGCLKCALCAEKTFAIETAYGRA 1669
EQAKLEELRGYTGKPIYSVWCGPETEQRAAFVDEVKCVGCLKCALCAEKTFAIETAYGRA
Sbjct: 112 EQAKLEELRGYTGKPIYSVWCGPETEQRAAFVDEVKCVGCLKCALCAEKTFAIETAYGRA 171
Query: 1668 RVVAQWADPESKIKEAIEACPCSIGVPYVKATTRQREDRGWKHGW*ACLQCIC*CQEVPR 1489
RVVAQWADPESKIKEAIEACP + +R D A L+ + + PR
Sbjct: 172 RVVAQWADPESKIKEAIEACPVDC------ISMVERSDL-------APLEFLM--SKQPR 216
Query: 1488 -KIR*SYEQNHKRDLPGELSIVKLYT--YM*DIK*FCWDVSQREVQISAVEAIRSISNWL 1318
+R + VK + Y + + SQREVQISAVEAIRSISNWL
Sbjct: 217 GNVRIGVGNTVGERVSNVFVDVKKFQERYAKAMSRTTKETSQREVQISAVEAIRSISNWL 276
Query: 1317 YWRSSPYTKPLSPESNMSLTFTKRKKAVDPDIRKLQDVVAAMKQADQSGRTKEKGSAYLL 1138
YWRSSPYTKPLSPESNMSLTFTKRKKAVDPDIRKLQDVVAAMKQADQSGRTKEKGSAYLL
Sbjct: 277 YWRSSPYTKPLSPESNMSLTFTKRKKAVDPDIRKLQDVVAAMKQADQSGRTKEKGSAYLL 336
Query: 1137 GEDYWSPSNAALPXXXXXXXXXXXXNPQVTRKTFPSEEKPTSKLQSR 997
GEDYWSPSNAALP NPQVTRKTFPSEEKPTS+ ++R
Sbjct: 337 GEDYWSPSNAALPSSGNNNGSKASSNPQVTRKTFPSEEKPTSRRENR 383
Score = 222 bits (565), Expect(3) = 0.0
Identities = 109/111 (98%), Positives = 109/111 (98%)
Frame = -2
Query: 2267 MTPAIFSPTTLPPSTGTWACSTSQKLITVRSPLKFKCRATSSSSSITDFDLYDLLGIDRS 2088
MTPAIFSPTTLPPST TW CSTSQKLITVRSPLKFKCRATSSSSSITDFDLYDLLGIDRS
Sbjct: 1 MTPAIFSPTTLPPSTATWPCSTSQKLITVRSPLKFKCRATSSSSSITDFDLYDLLGIDRS 60
Query: 2087 SDKSQIKSAYRALQKRCHPDIAGDPGHDMAIILNEAYQLLSDPISRQAYDK 1935
SDKSQIKSAYRALQKRCHPDIAGDPGHDMAIILNEAYQLLSDPISRQAYDK
Sbjct: 61 SDKSQIKSAYRALQKRCHPDIAGDPGHDMAIILNEAYQLLSDPISRQAYDK 111
Score = 121 bits (304), Expect(3) = 0.0
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = -2
Query: 1016 QASYRAASELNDHIGGSLALSIVNSPWQQILLAGVTWYFIGAMLLQLVEAVQHKLEDKET 837
QASYRAASELNDHIGGSLALSIVNSPWQQILLAGVTWYFIGAMLLQLVEAVQHKLEDKET
Sbjct: 406 QASYRAASELNDHIGGSLALSIVNSPWQQILLAGVTWYFIGAMLLQLVEAVQHKLEDKET 465
Score = 110 bits (274), Expect = 1e-22
Identities = 55/55 (100%), Positives = 55/55 (100%)
Frame = -2
Query: 1607 LAPLEFLMSKQPRGNVRIGVGNTVGERVSNVFVDVKKFQERYAKAMSRTTKETSQ 1443
LAPLEFLMSKQPRGNVRIGVGNTVGERVSNVFVDVKKFQERYAKAMSRTTKETSQ
Sbjct: 204 LAPLEFLMSKQPRGNVRIGVGNTVGERVSNVFVDVKKFQERYAKAMSRTTKETSQ 258
>dbj|BAC42598.1| unknown protein [Arabidopsis thaliana]
Length = 416
Score = 365 bits (936), Expect(4) = e-156
Identities = 202/287 (70%), Positives = 215/287 (74%), Gaps = 3/287 (1%)
Frame = -1
Query: 1848 EQAKLEELRGYTGKPIYSVWCGPETEQRAAFVDEVKCVGCLKCALCAEKTFAIETAYGRA 1669
EQAKLEELRGYTGKPIYSVWCGPETEQRAAFVDEVKCVGCLKCALCAEKTFAIETAYGRA
Sbjct: 63 EQAKLEELRGYTGKPIYSVWCGPETEQRAAFVDEVKCVGCLKCALCAEKTFAIETAYGRA 122
Query: 1668 RVVAQWADPESKIKEAIEACPCSIGVPYVKATTRQREDRGWKHGW*ACLQCIC*CQEVPR 1489
RVVAQWADPESKIKEAIEACP + +R D A L+ + + PR
Sbjct: 123 RVVAQWADPESKIKEAIEACPVDC------ISMVERSDL-------APLEFLM--SKQPR 167
Query: 1488 -KIR*SYEQNHKRDLPGELSIVKLYT--YM*DIK*FCWDVSQREVQISAVEAIRSISNWL 1318
+R + VK + Y + + SQREVQISAVEAIRSISNWL
Sbjct: 168 GNVRIGVGNTVGERVSNVFVDVKKFQERYAKAMSRTTKETSQREVQISAVEAIRSISNWL 227
Query: 1317 YWRSSPYTKPLSPESNMSLTFTKRKKAVDPDIRKLQDVVAAMKQADQSGRTKEKGSAYLL 1138
YWRSSPYTKPLSPESNMSLTFTKRKKAVDPDIRKLQDVVAAMKQADQSGRTKEKGSAYLL
Sbjct: 228 YWRSSPYTKPLSPESNMSLTFTKRKKAVDPDIRKLQDVVAAMKQADQSGRTKEKGSAYLL 287
Query: 1137 GEDYWSPSNAALPXXXXXXXXXXXXNPQVTRKTFPSEEKPTSKLQSR 997
GEDYWSPSNAALP NPQVTRKTFPSEEKPTS+ ++R
Sbjct: 288 GEDYWSPSNAALPSSGNNNGSKASSNPQVTRKTFPSEEKPTSRRENR 334
Score = 121 bits (304), Expect(4) = e-156
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = -2
Query: 1016 QASYRAASELNDHIGGSLALSIVNSPWQQILLAGVTWYFIGAMLLQLVEAVQHKLEDKET 837
QASYRAASELNDHIGGSLALSIVNSPWQQILLAGVTWYFIGAMLLQLVEAVQHKLEDKET
Sbjct: 357 QASYRAASELNDHIGGSLALSIVNSPWQQILLAGVTWYFIGAMLLQLVEAVQHKLEDKET 416
Score = 110 bits (274), Expect = 1e-22
Identities = 55/55 (100%), Positives = 55/55 (100%)
Frame = -2
Query: 1607 LAPLEFLMSKQPRGNVRIGVGNTVGERVSNVFVDVKKFQERYAKAMSRTTKETSQ 1443
LAPLEFLMSKQPRGNVRIGVGNTVGERVSNVFVDVKKFQERYAKAMSRTTKETSQ
Sbjct: 155 LAPLEFLMSKQPRGNVRIGVGNTVGERVSNVFVDVKKFQERYAKAMSRTTKETSQ 209
Score = 103 bits (256), Expect(4) = e-156
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = -3
Query: 2113 MTSWVLIEVLISLRSNQPIVRCRNDVIQISQEIPVMIWPSFLTRLTSFSLI 1961
MTSWVLIEVLISLRSNQPIVRCRNDVIQISQEIPVMIWPSFLTRLTSFSLI
Sbjct: 1 MTSWVLIEVLISLRSNQPIVRCRNDVIQISQEIPVMIWPSFLTRLTSFSLI 51
Score = 30.4 bits (67), Expect(4) = e-156
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -2
Query: 1982 AYQLLSDPISRQAYDK 1935
++ L+SDPISRQAYDK
Sbjct: 47 SFSLISDPISRQAYDK 62
>ref|NP_197714.1| putative protein; protein id: At5g23230.1 [Arabidopsis
thaliana]|gi|10177812|dbj|BAB11178.1|
gene_id:MKD15.9~pir||C72413~similar to unknown protein
[Arabidopsis thaliana]
Length = 198
Score = 326 bits (835), Expect(2) = 1e-90
Identities = 161/172 (93%), Positives = 161/172 (93%)
Frame = -2
Query: 560 RTYETRKREPNPKIAALLVIDMQNHFYSMAEPILQNALTTIDICRRASIPVFFTRHNHKS 381
RTYETRKREPNPKIAALLVIDMQNHFYSMAEPILQNALTTIDICRRASIPVFFTRHNHKS
Sbjct: 7 RTYETRKREPNPKIAALLVIDMQNHFYSMAEPILQNALTTIDICRRASIPVFFTRHNHKS 66
Query: 380 PTDHGMLGEWWNGDLILDGTTDSEIIPEINRQVTGPDEIVEKSTYSAFNNTHLQEKLDXX 201
PTDHGMLGEWWNGDLILDGTTDSEIIPEINRQVTGPDEIVEKSTYSAFNNTHLQEKLD
Sbjct: 67 PTDHGMLGEWWNGDLILDGTTDSEIIPEINRQVTGPDEIVEKSTYSAFNNTHLQEKLDKI 126
Query: 200 XXXXXXXXXVMTNLCCETTAREAFVKGFRVFFSTDATATVNEELHEATLMNL 45
VMTNLCCETTAREAFVKGFRVFFSTDATATVNEELHEATLMNL
Sbjct: 127 GVKEVIVIGVMTNLCCETTAREAFVKGFRVFFSTDATATVNEELHEATLMNL 178
Score = 32.7 bits (73), Expect(2) = 1e-90
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = -3
Query: 43 AYGFAYLVDCDRLQ 2
AYGFAYLVDCDRL+
Sbjct: 179 AYGFAYLVDCDRLR 192
>ref|NP_197713.1| putative protein; protein id: At5g23220.1 [Arabidopsis
thaliana]|gi|10177811|dbj|BAB11177.1|
gene_id:MKD15.8~pir||C72413~similar to unknown protein
[Arabidopsis thaliana]|gi|27754578|gb|AAO22736.1|
unknown protein [Arabidopsis
thaliana]|gi|28393855|gb|AAO42335.1| unknown protein
[Arabidopsis thaliana]
Length = 198
Score = 283 bits (723), Expect(2) = 5e-77
Identities = 140/172 (81%), Positives = 148/172 (85%)
Frame = -2
Query: 560 RTYETRKREPNPKIAALLVIDMQNHFYSMAEPILQNALTTIDICRRASIPVFFTRHNHKS 381
R YETRKR+PN KIAALLVIDMQNHF SMA+PIL N LTTIDICRRAS+PVFFTRHNHKS
Sbjct: 7 RKYETRKRDPNSKIAALLVIDMQNHFSSMAKPILNNVLTTIDICRRASVPVFFTRHNHKS 66
Query: 380 PTDHGMLGEWWNGDLILDGTTDSEIIPEINRQVTGPDEIVEKSTYSAFNNTHLQEKLDXX 201
PTDHGMLGEW NGD+ILDGTTDSEII EI QVTGPDE+VEK+TYSAFN T LQE L+
Sbjct: 67 PTDHGMLGEWCNGDVILDGTTDSEIIQEIQGQVTGPDEMVEKNTYSAFNKTRLQENLEKI 126
Query: 200 XXXXXXXXXVMTNLCCETTAREAFVKGFRVFFSTDATATVNEELHEATLMNL 45
VMTNLCCETTAREAF+KGFRVFFSTDATAT NEELHEATLMNL
Sbjct: 127 GVKEVIVIGVMTNLCCETTAREAFIKGFRVFFSTDATATFNEELHEATLMNL 178
Score = 30.0 bits (66), Expect(2) = 5e-77
Identities = 11/14 (78%), Positives = 14/14 (99%)
Frame = -3
Query: 43 AYGFAYLVDCDRLQ 2
A+GFAYLVDCD+L+
Sbjct: 179 AFGFAYLVDCDKLR 192
>dbj|BAC43021.1| unknown protein [Arabidopsis thaliana]
Length = 59
Score = 125 bits (315), Expect = 2e-27
Identities = 59/59 (100%), Positives = 59/59 (100%)
Frame = +1
Query: 304 MISESVVPSRIRSPFHHSPSMPWSVGDLWLWRVKNTGIEARRQMSMVVRAFWRIGSAIE 480
MISESVVPSRIRSPFHHSPSMPWSVGDLWLWRVKNTGIEARRQMSMVVRAFWRIGSAIE
Sbjct: 1 MISESVVPSRIRSPFHHSPSMPWSVGDLWLWRVKNTGIEARRQMSMVVRAFWRIGSAIE 59
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 131
effective length of database: 253,773,515
effective search space used: 174342404805
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)