BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.17.cl.1747.Contig1
         (659 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM64898.1|  actin 8 [Arabidopsis thaliana]                    191   6e-48
ref|NP_188508.1|  actin 2; protein id: At3g18780.1, supporte...   191   6e-48
ref|NP_175350.1|  actin 8; protein id: At1g49240.1, supporte...   191   6e-48
gb|AAD02328.1|  actin [Brassica oleracea]                         189   2e-47
gb|AAC49523.1|  actin 8                                           189   3e-47

>gb|AAM64898.1| actin 8 [Arabidopsis thaliana]
          Length = 377

 Score =  191 bits (486), Expect = 6e-48
 Identities = 94/94 (100%), Positives = 94/94 (100%)
 Frame = +3

Query: 3   IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI 182
           IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI
Sbjct: 284 IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI 343

Query: 183 GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 284
           GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF
Sbjct: 344 GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377



>ref|NP_188508.1| actin 2; protein id: At3g18780.1, supported by cDNA: 3819.,
           supported by cDNA: gi_16226779, supported by cDNA:
           gi_17381173, supported by cDNA: gi_20465834 [Arabidopsis
           thaliana]|gi|25452790|sp|Q96292|ACT2_ARATH Actin
           2|gi|1669387|gb|AAB37098.1| actin 2 [Arabidopsis
           thaliana]|gi|9293903|dbj|BAB01806.1| actin 2
           [Arabidopsis
           thaliana]|gi|16226780|gb|AAL16260.1|AF428330_1
           AT3g18780/MVE11_16 [Arabidopsis
           thaliana]|gi|17381174|gb|AAL36399.1| putative actin 2
           protein [Arabidopsis
           thaliana]|gi|20465835|gb|AAM20022.1| putative actin 2
           protein [Arabidopsis
           thaliana]|gi|21593338|gb|AAM65287.1| actin 2
           [Arabidopsis thaliana]
          Length = 377

 Score =  191 bits (486), Expect = 6e-48
 Identities = 94/94 (100%), Positives = 94/94 (100%)
 Frame = +3

Query: 3   IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI 182
           IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI
Sbjct: 284 IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI 343

Query: 183 GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 284
           GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF
Sbjct: 344 GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377



>ref|NP_175350.1| actin 8; protein id: At1g49240.1, supported by cDNA: 34479.,
           supported by cDNA: gi_13878078, supported by cDNA:
           gi_17104748 [Arabidopsis
           thaliana]|gi|25452791|sp|Q96293|ACT8_ARATH Actin
           8|gi|7770354|gb|AAF69724.1|AC016041_29 F27J15.1
           [Arabidopsis
           thaliana]|gi|13878079|gb|AAK44117.1|AF370302_1 putative
           actin 8 protein [Arabidopsis
           thaliana]|gi|17104749|gb|AAL34263.1| putative actin 8
           protein [Arabidopsis
           thaliana]|gi|21703145|gb|AAM74512.1| At1g49240/F27J15_1
           [Arabidopsis thaliana]
          Length = 377

 Score =  191 bits (486), Expect = 6e-48
 Identities = 94/94 (100%), Positives = 94/94 (100%)
 Frame = +3

Query: 3   IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI 182
           IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI
Sbjct: 284 IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI 343

Query: 183 GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 284
           GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF
Sbjct: 344 GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377



>gb|AAD02328.1| actin [Brassica oleracea]
          Length = 377

 Score =  189 bits (481), Expect = 2e-47
 Identities = 93/94 (98%), Positives = 93/94 (98%)
 Frame = +3

Query: 3   IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI 182
           IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI
Sbjct: 284 IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI 343

Query: 183 GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 284
           GGSILASLSTFQQMWI KAEYDEAGPGIVHRKCF
Sbjct: 344 GGSILASLSTFQQMWIPKAEYDEAGPGIVHRKCF 377



>gb|AAC49523.1| actin 8
          Length = 377

 Score =  189 bits (480), Expect = 3e-47
 Identities = 93/94 (98%), Positives = 93/94 (98%)
 Frame = +3

Query: 3   IMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI 182
           IMKCDVDIRKDLYGNIVLSGGTTMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWI
Sbjct: 284 IMKCDVDIRKDLYGNIVLSGGTTMFLGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI 343

Query: 183 GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 284
           GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF
Sbjct: 344 GGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 27389292413
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)