BLAST Search Results

BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.15.cl.1536.Contig1
         (707 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_565597.1|  F-box protein family, AtFBL6; protein id: ...    40   0.031
ref|NP_193845.1|  G-protein beta family; protein id: At4g211...    35   1.3  
ref|NP_326457.1|  ABC TRANSPORTER ATP-BINDING AND PERMEASE P...    34   2.2  
dbj|BAB93330.1|  OJ1117_G01.13 [Oryza sativa (japonica culti...    33   2.9  
ref|NP_523062.1|  PROBABLE MAJOR ANAEROBICALLY INDUCED OUTER...    33   4.9  

>ref|NP_565597.1| F-box protein family, AtFBL6; protein id: At2g25490.1, supported by
           cDNA: gi_18176338, supported by cDNA: gi_20259112
           [Arabidopsis thaliana]|gi|25412324|pir||A84649 probable
           glucose regulated repressor protein [imported] -
           Arabidopsis thaliana|gi|4432860|gb|AAD20708.1| F-box
           protein family, AtFBL6 [Arabidopsis
           thaliana]|gi|18176339|gb|AAL60026.1| putative F-box
           protein family, AtFBL6 [Arabidopsis
           thaliana]|gi|20259113|gb|AAM14272.1| unknown protein
           [Arabidopsis thaliana]
          Length = 628

 Score = 40.0 bits (92), Expect = 0.031
 Identities = 18/19 (94%), Positives = 19/19 (99%)
 Frame = +1

Query: 4   RSISNSTVDFLVERLYKCN 60
           RSISNSTVDFLVERLYKC+
Sbjct: 607 RSISNSTVDFLVERLYKCD 625



>ref|NP_193845.1| G-protein beta family; protein id: At4g21130.1 [Arabidopsis
           thaliana]|gi|7486598|pir||T04944 hypothetical protein
           F7J7.70 - Arabidopsis
           thaliana|gi|2911070|emb|CAA17532.1| hypothetical protein
           [Arabidopsis thaliana]|gi|7268910|emb|CAB79113.1|
           hypothetical protein [Arabidopsis thaliana]
          Length = 537

 Score = 34.7 bits (78), Expect = 1.3
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 348 G*TRF*GLSSPVSCCFGVFYEPVIYFI-PVVCLCWVWFSSEGFCMICTGSGLVQALVLSE 524
           G  R  G+ S  S    ++  P++ ++  +   C +W  S+ +C   T +   + + L +
Sbjct: 429 GCVRLWGVESGSSAIQPLYELPLVTWVCELFSFCKIWSVSDRWCWTGTAA---RKMGLLK 485

Query: 525 VCSGFCCNNSIKEFFLGFFF 584
           +C+  CCN S+K F  G  F
Sbjct: 486 ICAERCCNTSLKAFMKGSQF 505



>ref|NP_326457.1| ABC TRANSPORTER ATP-BINDING AND PERMEASE PROTEIN [Mycoplasma
           pulmonis]|gi|25394584|pir||B90590 hypothetical protein
           MYPU_6260 [imported] - Mycoplasma pulmonis (strain UAB
           CTIP)|gi|14090041|emb|CAC13799.1| ABC TRANSPORTER
           ATP-BINDING AND PERMEASE PROTEIN [Mycoplasma pulmonis]
          Length = 640

 Score = 33.9 bits (76), Expect = 2.2
 Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
 Frame = +1

Query: 301 LSRNRKVVCCLRIYLPGRRDFRVYHL--LFLAALVSFTSQLSILSPSFVFVGFGFPRKGF 474
           L+  +K +  L+I    ++   +YHL  +FL A++S    L +  PS +   +       
Sbjct: 536 LNSKKKEMGILKILGASKKQIILYHLAHIFLIAILSLVGILILFEPSQLLFNY------- 588

Query: 475 V*YVRVQVWFRPWFSQRFALAFVATTLLKSFFWVFF 582
              ++V+ +F P  +Q+ A  F A +++ S   + +
Sbjct: 589 --VLKVREFFSPSLNQKIAAIFAAWSIVNSIIIIIY 622



>dbj|BAB93330.1| OJ1117_G01.13 [Oryza sativa (japonica cultivar-group)]
          Length = 113

 Score = 33.5 bits (75), Expect = 2.9
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 282 KRKPCKKTIDWKKRNRKRTAWKKEGKPGTEPSERDA*ITEPEKELRLDKRTW 127
           K+K  KK    KK+ +K+   KK+ K   E  E D    E E+EL+L++  W
Sbjct: 11  KKKKKKKKKKKKKKKKKKKKKKKKKKREREREEEDEEEEEEEEELKLNEYIW 62



>ref|NP_523062.1| PROBABLE MAJOR ANAEROBICALLY INDUCED OUTER MEMBRANE TRANSMEMBRANE
           PROTEIN [Ralstonia
           solanacearum]|gi|17431977|emb|CAD18654.1| PROBABLE MAJOR
           ANAEROBICALLY INDUCED OUTER MEMBRANE TRANSMEMBRANE
           PROTEIN [Ralstonia solanacearum]
          Length = 510

 Score = 32.7 bits (73), Expect = 4.9
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 359 SRLPGKYILKQHTTFRFRDKLEFP**K-GNPAKKPLTGKKETGSELLGKKKENRVPSLAR 183
           +R+PG Y+L  H+ FR  +K      K   P  KPL   KE  +  LG +    + ++ R
Sbjct: 320 ARVPGSYVLVDHSIFRAFNKGAMAILKIDGPEDKPLYSGKELDAVYLGDRAGPNLSAVTR 379

Query: 182 GTRRSQS 162
             + S S
Sbjct: 380 AAQASAS 386



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 119
effective length of database: 269,842,067
effective search space used: 31301679772
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results