BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.11.cl.1126.Contig1
(1094 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189283.1| gamma tonoplast intrinsic protein; protein... 476 e-133
pir||T51819 gamma tonoplast intrinsic protein 2 [imported] ... 470 e-131
gb|AAB62692.1| salt-stress induced tonoplast intrinsic prot... 464 e-130
gb|AAD39372.1|AF118381_1 tonoplast intrinsic protein [Brass... 442 e-123
dbj|BAA12711.1| VM23 [Raphanus sativus] 439 e-122
>ref|NP_189283.1| gamma tonoplast intrinsic protein; protein id: At3g26520.1, supported
by cDNA: gi_16226820, supported by cDNA: gi_16930518,
supported by cDNA: gi_19310528, supported by cDNA:
gi_3688798 [Arabidopsis
thaliana]|gi|9293929|dbj|BAB01832.1| salt-stress induced
tonoplast intrinsic protein [Arabidopsis
thaliana]|gi|16226821|gb|AAL16271.1|AF428341_1
AT3g26520/MFE16_3 [Arabidopsis
thaliana]|gi|16930519|gb|AAL31945.1|AF419613_1
AT3g26520/MFE16_3 [Arabidopsis
thaliana]|gi|19310529|gb|AAL84998.1| AT3g26520/MFE16_3
[Arabidopsis thaliana]
Length = 253
Score = 476 bits (1226), Expect = e-133
Identities = 241/253 (95%), Positives = 241/253 (95%)
Frame = -3
Query: 1023 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLV 844
MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLV
Sbjct: 1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLV 60
Query: 843 AAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACF 664
AAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACF
Sbjct: 61 AAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACF 120
Query: 663 LLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAI 484
LLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAI
Sbjct: 121 LLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAI 180
Query: 483 GFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWXXXXXXXXXXXXIYDFVFI 304
GFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYW IYDFVFI
Sbjct: 181 GFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLIGGGLAGIIYDFVFI 240
Query: 303 DENAHEQLPTTDY 265
DENAHEQLPTTDY
Sbjct: 241 DENAHEQLPTTDY 253
>pir||T51819 gamma tonoplast intrinsic protein 2 [imported] - Arabidopsis
thaliana|gi|3688799|gb|AAC62397.1| gamma tonoplast
intrinsic protein 2 [Arabidopsis thaliana]
Length = 253
Score = 470 bits (1209), Expect = e-131
Identities = 238/253 (94%), Positives = 239/253 (94%)
Frame = -3
Query: 1023 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLV 844
MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLV
Sbjct: 1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLV 60
Query: 843 AAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACF 664
AAAL+HAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACF
Sbjct: 61 AAALSHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACF 120
Query: 663 LLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAI 484
LLSFATGGEPIPAFGLSAGV SLNALVFEIVMTFGLVYTVYATAVDPKN SLGTIAPIAI
Sbjct: 121 LLSFATGGEPIPAFGLSAGVRSLNALVFEIVMTFGLVYTVYATAVDPKNASLGTIAPIAI 180
Query: 483 GFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWXXXXXXXXXXXXIYDFVFI 304
GFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYW IYDFVFI
Sbjct: 181 GFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLIGGGLAGIIYDFVFI 240
Query: 303 DENAHEQLPTTDY 265
DENAHEQLPTTDY
Sbjct: 241 DENAHEQLPTTDY 253
>gb|AAB62692.1| salt-stress induced tonoplast intrinsic protein [Arabidopsis
thaliana]
Length = 273
Score = 464 bits (1195), Expect = e-130
Identities = 241/273 (88%), Positives = 241/273 (88%), Gaps = 20/273 (7%)
Frame = -3
Query: 1023 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLV 844
MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLV
Sbjct: 1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLV 60
Query: 843 AAALAHAFGLFVAVSVGANI--------------------SGGHVNPAVTFGVLLGGNIT 724
AAALAHAFGLFVAVSVGANI SGGHVNPAVTFGVLLGGNIT
Sbjct: 61 AAALAHAFGLFVAVSVGANIAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNIT 120
Query: 723 LLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTV 544
LLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTV
Sbjct: 121 LLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTV 180
Query: 543 YATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVY 364
YATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVY
Sbjct: 181 YATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVY 240
Query: 363 WXXXXXXXXXXXXIYDFVFIDENAHEQLPTTDY 265
W IYDFVFIDENAHEQLPTTDY
Sbjct: 241 WAGPLIGGGLAGIIYDFVFIDENAHEQLPTTDY 273
>gb|AAD39372.1|AF118381_1 tonoplast intrinsic protein [Brassica napus]
Length = 253
Score = 442 bits (1136), Expect = e-123
Identities = 221/253 (87%), Positives = 229/253 (90%)
Frame = -3
Query: 1023 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLV 844
MPTRNIAIGGVQEEV HP+ALRAALAEFISTLIFVFAGSGSGIAFNK+TDNGATTPSGLV
Sbjct: 1 MPTRNIAIGGVQEEVTHPSALRAALAEFISTLIFVFAGSGSGIAFNKLTDNGATTPSGLV 60
Query: 843 AAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACF 664
AAALAHAFGLFVAVSVGANISGGHVNPAVTFG LGGNITLLRG+LYWIAQLLGSV AC
Sbjct: 61 AAALAHAFGLFVAVSVGANISGGHVNPAVTFGAFLGGNITLLRGLLYWIAQLLGSVVACL 120
Query: 663 LLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAI 484
LL FATGG +PAFGLSAGV SLN VFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAI
Sbjct: 121 LLKFATGGLAVPAFGLSAGVESLNGFVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAI 180
Query: 483 GFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWXXXXXXXXXXXXIYDFVFI 304
GFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHW+YW IY+FVFI
Sbjct: 181 GFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWIYWAGPLVGGGLAGLIYEFVFI 240
Query: 303 DENAHEQLPTTDY 265
++N HEQLPTTDY
Sbjct: 241 NQNGHEQLPTTDY 253
>dbj|BAA12711.1| VM23 [Raphanus sativus]
Length = 253
Score = 439 bits (1129), Expect = e-122
Identities = 220/253 (86%), Positives = 228/253 (89%)
Frame = -3
Query: 1023 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLV 844
MP RNIAIGGVQEEV HP+ALRAALAEFISTLIFVFAGSGSGIAFNK+TDNGATTPSGLV
Sbjct: 1 MPIRNIAIGGVQEEVTHPSALRAALAEFISTLIFVFAGSGSGIAFNKLTDNGATTPSGLV 60
Query: 843 AAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACF 664
AAALAHAFGLFVAVSVGANISGGHVNPAVTFG +GGNITLLRGILYWIAQLLGSV AC
Sbjct: 61 AAALAHAFGLFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGILYWIAQLLGSVVACL 120
Query: 663 LLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAI 484
LL FATGG +PAFGLSAGV SLN VFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAI
Sbjct: 121 LLKFATGGLAVPAFGLSAGVESLNGFVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAI 180
Query: 483 GFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWXXXXXXXXXXXXIYDFVFI 304
GFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHW+YW IY+FVFI
Sbjct: 181 GFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWIYWAGPLVGGGLAGLIYEFVFI 240
Query: 303 DENAHEQLPTTDY 265
++N HEQLPTTDY
Sbjct: 241 NQNGHEQLPTTDY 253
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 124
effective length of database: 263,146,837
effective search space used: 63155240880
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)