BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.1.cl.186.Contig1
(2377 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42427.1| unknown protein [Arabidopsis thaliana] 1276 0.0
pir||T05901 hypothetical protein F6H11.200 - Arabidopsis th... 1273 0.0
ref|NP_680467.1| similar to copia-like retroelement pol pol... 1271 0.0
ref|NP_195502.1| putative protein; protein id: At4g37890.1 ... 473 e-132
dbj|BAC41972.1| unknown protein [Arabidopsis thaliana] 464 e-129
>dbj|BAC42427.1| unknown protein [Arabidopsis thaliana]
Length = 717
Score = 1276 bits (3301), Expect = 0.0
Identities = 658/716 (91%), Positives = 658/716 (91%)
Frame = +3
Query: 153 MVFGWRKAFCTSVSSNQDKPQQHSSLHTTDPPIPTPRFRSKLGFLSNPXXXXXXXXXXXX 332
MVFGWRKAFCTSVSSNQDKPQQHSSLHTTDPPIPTPRFRSKLGFLSNP
Sbjct: 1 MVFGWRKAFCTSVSSNQDKPQQHSSLHTTDPPIPTPRFRSKLGFLSNPSTPRLRSRGGSG 60
Query: 333 XXXXXXXXXXVTIPSLPTSPKLHCRTTSNATPRTXXXXXXXXXXXXXXXXXXXXXXXQGG 512
VTIPSLPTSPKLHCRTTSNATPRT QGG
Sbjct: 61 TGCRSSASTSVTIPSLPTSPKLHCRTTSNATPRTSNSSSPKFFSNPSSPKSSSSSSSQGG 120
Query: 513 GGVSLLRATLLLNKSNSSRCAICLQRVNSNQSNSTAAIFTAECSHSFHLSCVNGLEDKRC 692
GGVSLLRATLLLNKSNSSRCAICLQRVNSNQSNSTAAIFTAECSHSFHLSCVNGLEDKRC
Sbjct: 121 GGVSLLRATLLLNKSNSSRCAICLQRVNSNQSNSTAAIFTAECSHSFHLSCVNGLEDKRC 180
Query: 693 PFCSAAWNHAPKSNYPAVNNNFGSDPIRRPEIREIKTGKSLRVYNDDEPLAYSPVSLAQI 872
PFCSAAWNHAPKSNYPAVNNNFGSDPIRRPEIREIKTGKSLRVYNDDEPLAYSPVSLAQI
Sbjct: 181 PFCSAAWNHAPKSNYPAVNNNFGSDPIRRPEIREIKTGKSLRVYNDDEPLAYSPVSLAQI 240
Query: 873 NTIHXXXXXXXXXXXXXFPGFFRDSSITSDMVPSISGNLEVKLLPESAVVETGKKKETHV 1052
NTIH FPGFFRDSSITSDMVPSISGNLEVKLLPESAVVETGKKKETHV
Sbjct: 241 NTIHESDENDDVEDDDDFPGFFRDSSITSDMVPSISGNLEVKLLPESAVVETGKKKETHV 300
Query: 1053 VIMKLKASPSPSSITDAIKARRPSIDLVTVLDLSNGGANLQTVKHAMRSVISLLREMDRL 1232
VIMKLKASPSPSSITDAIKARRPSIDLVTVLDLSNGGANLQTVKHAMRSVISLLREMDRL
Sbjct: 301 VIMKLKASPSPSSITDAIKARRPSIDLVTVLDLSNGGANLQTVKHAMRSVISLLREMDRL 360
Query: 1233 SIVVFSTGSKRLMPLRRMTAKGRRSARRMVDALGGMETTGGVGMSVNDALKKAVKVVEDR 1412
SIVVFSTGSKRLMPLRRMTAKGRRSARRMVDALGGMETTGGVGMSVNDALKKAVKVVEDR
Sbjct: 361 SIVVFSTGSKRLMPLRRMTAKGRRSARRMVDALGGMETTGGVGMSVNDALKKAVKVVEDR 420
Query: 1413 REKNPSTSIFVLSDGQDQPEAVLKAKLNATRIPFVVSTTRFSRPEIPVHSVYIASPGALL 1592
REKNPSTSIFVLSDGQDQPEAVLKAKLNATRIPFVVSTTRFSRPEIPVHSVYIASPGALL
Sbjct: 421 REKNPSTSIFVLSDGQDQPEAVLKAKLNATRIPFVVSTTRFSRPEIPVHSVYIASPGALL 480
Query: 1593 HAPLRDAFTERIASLLNVTLHNVKLNLSLVNGSHLTEISSVYPLTGRLENFGSGSVIQVG 1772
HAPLRDAFTERIASLLNVTLHNVKLNLSLVNGSHLTEISSVYPLTGRLENFGSGSVIQVG
Sbjct: 481 HAPLRDAFTERIASLLNVTLHNVKLNLSLVNGSHLTEISSVYPLTGRLENFGSGSVIQVG 540
Query: 1773 DLFAEEEREFLVELKVPTSSSGSHQVMSVQSSIVDQMTHQPMTCPKEKRFLIPRPQSVRY 1952
DLFAEEEREFLVELKVPTSSSGSHQVMSVQSSIVDQMTHQPMTCPKEKRFLIPRPQSVRY
Sbjct: 541 DLFAEEEREFLVELKVPTSSSGSHQVMSVQSSIVDQMTHQPMTCPKEKRFLIPRPQSVRY 600
Query: 1953 VSSSIERLRNLHSMCRAVADSRRLIEREDLSGAYQVLTTARSNASHSDDSLRSLEVELNE 2132
VSSSIERLRNLHSMCRAVADSRRLIEREDLSGAYQVLTTARSNASHSDDSLRSLEVELNE
Sbjct: 601 VSSSIERLRNLHSMCRAVADSRRLIEREDLSGAYQVLTTARSNASHSDDSLRSLEVELNE 660
Query: 2133 LSRIKPRNSILNRTEDKPEQLTPTSAWRAAEKLAKVAIMRKHLNRVSDMHGLENAR 2300
LSRIKPRNSILNRTEDKPEQLTPTSAWRAAEKLAKVAIMRKHLNRVSDMHGLENAR
Sbjct: 661 LSRIKPRNSILNRTEDKPEQLTPTSAWRAAEKLAKVAIMRKHLNRVSDMHGLENAR 716
>pir||T05901 hypothetical protein F6H11.200 - Arabidopsis
thaliana|gi|2827718|emb|CAA16691.1| retrotransposon -
like protein [Arabidopsis
thaliana]|gi|10177325|dbj|BAB10674.1| copia-like
retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1021
Score = 1273 bits (3294), Expect = 0.0
Identities = 657/717 (91%), Positives = 657/717 (91%)
Frame = +3
Query: 150 EMVFGWRKAFCTSVSSNQDKPQQHSSLHTTDPPIPTPRFRSKLGFLSNPXXXXXXXXXXX 329
EMVFGWRKAFCTSVSSNQDKPQQHSSLHTTDPPIPTPRFRSK GFLSNP
Sbjct: 304 EMVFGWRKAFCTSVSSNQDKPQQHSSLHTTDPPIPTPRFRSKFGFLSNPSTPRLRSRGGS 363
Query: 330 XXXXXXXXXXXVTIPSLPTSPKLHCRTTSNATPRTXXXXXXXXXXXXXXXXXXXXXXXQG 509
VTIPSLPTSPKLHCRTTSNATPRT QG
Sbjct: 364 GTGCRSSASTSVTIPSLPTSPKLHCRTTSNATPRTSNSSSPKFFSNPSSPKSSSSSSSQG 423
Query: 510 GGGVSLLRATLLLNKSNSSRCAICLQRVNSNQSNSTAAIFTAECSHSFHLSCVNGLEDKR 689
GGGVSLLRATLLLNKSNSSRCAICLQRVNSNQSNSTAAIFTAECSHSFHLSCVNGLEDKR
Sbjct: 424 GGGVSLLRATLLLNKSNSSRCAICLQRVNSNQSNSTAAIFTAECSHSFHLSCVNGLEDKR 483
Query: 690 CPFCSAAWNHAPKSNYPAVNNNFGSDPIRRPEIREIKTGKSLRVYNDDEPLAYSPVSLAQ 869
CPFCSAAWNHAPKSNYPAVNNNFGSDPIRRPEIREIKTGKSLRVYNDDEPLAYSPVSLAQ
Sbjct: 484 CPFCSAAWNHAPKSNYPAVNNNFGSDPIRRPEIREIKTGKSLRVYNDDEPLAYSPVSLAQ 543
Query: 870 INTIHXXXXXXXXXXXXXFPGFFRDSSITSDMVPSISGNLEVKLLPESAVVETGKKKETH 1049
INTIH FPGFFRDSSITSDMVPSISGNLEVKLLPESAVVETGKKKETH
Sbjct: 544 INTIHESDENDDVEDDDDFPGFFRDSSITSDMVPSISGNLEVKLLPESAVVETGKKKETH 603
Query: 1050 VVIMKLKASPSPSSITDAIKARRPSIDLVTVLDLSNGGANLQTVKHAMRSVISLLREMDR 1229
VVIMKLKASPSPSSITDAIKARRPSIDLVTVLDLSNGGANLQTVKHAMRSVISLLREMDR
Sbjct: 604 VVIMKLKASPSPSSITDAIKARRPSIDLVTVLDLSNGGANLQTVKHAMRSVISLLREMDR 663
Query: 1230 LSIVVFSTGSKRLMPLRRMTAKGRRSARRMVDALGGMETTGGVGMSVNDALKKAVKVVED 1409
LSIVVFSTGSKRLMPLRRMTAKGRRSARRMVDALGGMETTGGVGMSVNDALKKAVKVVED
Sbjct: 664 LSIVVFSTGSKRLMPLRRMTAKGRRSARRMVDALGGMETTGGVGMSVNDALKKAVKVVED 723
Query: 1410 RREKNPSTSIFVLSDGQDQPEAVLKAKLNATRIPFVVSTTRFSRPEIPVHSVYIASPGAL 1589
RREKNPSTSIFVLSDGQDQPEAVLKAKLNATRIPFVVSTTRFSRPEIPVHSVYIASPGAL
Sbjct: 724 RREKNPSTSIFVLSDGQDQPEAVLKAKLNATRIPFVVSTTRFSRPEIPVHSVYIASPGAL 783
Query: 1590 LHAPLRDAFTERIASLLNVTLHNVKLNLSLVNGSHLTEISSVYPLTGRLENFGSGSVIQV 1769
LHAPLRDAFTERIASLLNVTLHNVKLNLSLVNGSHLTEISSVY LTGRLENFGSGSVIQV
Sbjct: 784 LHAPLRDAFTERIASLLNVTLHNVKLNLSLVNGSHLTEISSVYSLTGRLENFGSGSVIQV 843
Query: 1770 GDLFAEEEREFLVELKVPTSSSGSHQVMSVQSSIVDQMTHQPMTCPKEKRFLIPRPQSVR 1949
GDLFAEEEREFLVELKVPTSSSGSHQVMSVQSSIVDQMTHQPMTCPKEKRFLIPRPQSVR
Sbjct: 844 GDLFAEEEREFLVELKVPTSSSGSHQVMSVQSSIVDQMTHQPMTCPKEKRFLIPRPQSVR 903
Query: 1950 YVSSSIERLRNLHSMCRAVADSRRLIEREDLSGAYQVLTTARSNASHSDDSLRSLEVELN 2129
YVSSSIERLRNLHSMCRAVADSRRLIEREDLSGAYQVLTTARSNASHSDDSLRSLEVELN
Sbjct: 904 YVSSSIERLRNLHSMCRAVADSRRLIEREDLSGAYQVLTTARSNASHSDDSLRSLEVELN 963
Query: 2130 ELSRIKPRNSILNRTEDKPEQLTPTSAWRAAEKLAKVAIMRKHLNRVSDMHGLENAR 2300
ELSRIKPRNSILNRTEDKPEQLTPTSAWRAAEKLAKVAIMRKHLNRVSDMHGLENAR
Sbjct: 964 ELSRIKPRNSILNRTEDKPEQLTPTSAWRAAEKLAKVAIMRKHLNRVSDMHGLENAR 1020
>ref|NP_680467.1| similar to copia-like retroelement pol polyprotein; protein id:
At5g65683.1 [Arabidopsis thaliana]
Length = 717
Score = 1271 bits (3289), Expect = 0.0
Identities = 656/716 (91%), Positives = 656/716 (91%)
Frame = +3
Query: 153 MVFGWRKAFCTSVSSNQDKPQQHSSLHTTDPPIPTPRFRSKLGFLSNPXXXXXXXXXXXX 332
MVFGWRKAFCTSVSSNQDKPQQHSSLHTTDPPIPTPRFRSK GFLSNP
Sbjct: 1 MVFGWRKAFCTSVSSNQDKPQQHSSLHTTDPPIPTPRFRSKFGFLSNPSTPRLRSRGGSG 60
Query: 333 XXXXXXXXXXVTIPSLPTSPKLHCRTTSNATPRTXXXXXXXXXXXXXXXXXXXXXXXQGG 512
VTIPSLPTSPKLHCRTTSNATPRT QGG
Sbjct: 61 TGCRSSASTSVTIPSLPTSPKLHCRTTSNATPRTSNSSSPKFFSNPSSPKSSSSSSSQGG 120
Query: 513 GGVSLLRATLLLNKSNSSRCAICLQRVNSNQSNSTAAIFTAECSHSFHLSCVNGLEDKRC 692
GGVSLLRATLLLNKSNSSRCAICLQRVNSNQSNSTAAIFTAECSHSFHLSCVNGLEDKRC
Sbjct: 121 GGVSLLRATLLLNKSNSSRCAICLQRVNSNQSNSTAAIFTAECSHSFHLSCVNGLEDKRC 180
Query: 693 PFCSAAWNHAPKSNYPAVNNNFGSDPIRRPEIREIKTGKSLRVYNDDEPLAYSPVSLAQI 872
PFCSAAWNHAPKSNYPAVNNNFGSDPIRRPEIREIKTGKSLRVYNDDEPLAYSPVSLAQI
Sbjct: 181 PFCSAAWNHAPKSNYPAVNNNFGSDPIRRPEIREIKTGKSLRVYNDDEPLAYSPVSLAQI 240
Query: 873 NTIHXXXXXXXXXXXXXFPGFFRDSSITSDMVPSISGNLEVKLLPESAVVETGKKKETHV 1052
NTIH FPGFFRDSSITSDMVPSISGNLEVKLLPESAVVETGKKKETHV
Sbjct: 241 NTIHESDENDDVEDDDDFPGFFRDSSITSDMVPSISGNLEVKLLPESAVVETGKKKETHV 300
Query: 1053 VIMKLKASPSPSSITDAIKARRPSIDLVTVLDLSNGGANLQTVKHAMRSVISLLREMDRL 1232
VIMKLKASPSPSSITDAIKARRPSIDLVTVLDLSNGGANLQTVKHAMRSVISLLREMDRL
Sbjct: 301 VIMKLKASPSPSSITDAIKARRPSIDLVTVLDLSNGGANLQTVKHAMRSVISLLREMDRL 360
Query: 1233 SIVVFSTGSKRLMPLRRMTAKGRRSARRMVDALGGMETTGGVGMSVNDALKKAVKVVEDR 1412
SIVVFSTGSKRLMPLRRMTAKGRRSARRMVDALGGMETTGGVGMSVNDALKKAVKVVEDR
Sbjct: 361 SIVVFSTGSKRLMPLRRMTAKGRRSARRMVDALGGMETTGGVGMSVNDALKKAVKVVEDR 420
Query: 1413 REKNPSTSIFVLSDGQDQPEAVLKAKLNATRIPFVVSTTRFSRPEIPVHSVYIASPGALL 1592
REKNPSTSIFVLSDGQDQPEAVLKAKLNATRIPFVVSTTRFSRPEIPVHSVYIASPGALL
Sbjct: 421 REKNPSTSIFVLSDGQDQPEAVLKAKLNATRIPFVVSTTRFSRPEIPVHSVYIASPGALL 480
Query: 1593 HAPLRDAFTERIASLLNVTLHNVKLNLSLVNGSHLTEISSVYPLTGRLENFGSGSVIQVG 1772
HAPLRDAFTERIASLLNVTLHNVKLNLSLVNGSHLTEISSVY LTGRLENFGSGSVIQVG
Sbjct: 481 HAPLRDAFTERIASLLNVTLHNVKLNLSLVNGSHLTEISSVYSLTGRLENFGSGSVIQVG 540
Query: 1773 DLFAEEEREFLVELKVPTSSSGSHQVMSVQSSIVDQMTHQPMTCPKEKRFLIPRPQSVRY 1952
DLFAEEEREFLVELKVPTSSSGSHQVMSVQSSIVDQMTHQPMTCPKEKRFLIPRPQSVRY
Sbjct: 541 DLFAEEEREFLVELKVPTSSSGSHQVMSVQSSIVDQMTHQPMTCPKEKRFLIPRPQSVRY 600
Query: 1953 VSSSIERLRNLHSMCRAVADSRRLIEREDLSGAYQVLTTARSNASHSDDSLRSLEVELNE 2132
VSSSIERLRNLHSMCRAVADSRRLIEREDLSGAYQVLTTARSNASHSDDSLRSLEVELNE
Sbjct: 601 VSSSIERLRNLHSMCRAVADSRRLIEREDLSGAYQVLTTARSNASHSDDSLRSLEVELNE 660
Query: 2133 LSRIKPRNSILNRTEDKPEQLTPTSAWRAAEKLAKVAIMRKHLNRVSDMHGLENAR 2300
LSRIKPRNSILNRTEDKPEQLTPTSAWRAAEKLAKVAIMRKHLNRVSDMHGLENAR
Sbjct: 661 LSRIKPRNSILNRTEDKPEQLTPTSAWRAAEKLAKVAIMRKHLNRVSDMHGLENAR 716
>ref|NP_195502.1| putative protein; protein id: At4g37890.1 [Arabidopsis
thaliana]|gi|7485841|pir||T05616 hypothetical protein
F20D10.10 - Arabidopsis
thaliana|gi|4467095|emb|CAB37529.1| putative protein
[Arabidopsis thaliana]|gi|7270772|emb|CAB80454.1|
putative protein [Arabidopsis thaliana]
Length = 720
Score = 473 bits (1218), Expect = e-132
Identities = 320/754 (42%), Positives = 428/754 (56%), Gaps = 38/754 (5%)
Frame = +3
Query: 153 MVFGWRKAFCTSVSSNQDKPQQHSSLHTTDPPIPTPRFRSKLGFLSNPXXXXXXXXXXXX 332
M+ G R+ F +S+ +D + SL P S+ GF SNP
Sbjct: 1 MMNGLRRTFWSSIHKKKDNNRVDDSLDRQKPTTT-----SRFGFFSNPSTPRSETRPDSV 55
Query: 333 X-------XXXXXXXXXVTIPSLPTSPKLHCRTTSNATPRTXXXXXXXXXXXXXXXXXXX 491
PSLP SPKL C T+ + TP
Sbjct: 56 TCSPTIPCQSWSATAISTPSPSLPASPKLQCDTSGDVTP---TRNRSPLSFLSVSSSSST 112
Query: 492 XXXXQGGGGVSLLRATL------LLNKSN-----SSRCAICLQRVNSNQSNSTAAIFTAE 638
+ SLL++ L +LN++N SS+C ICLQ + + AIFTAE
Sbjct: 113 PSSPKSPASFSLLKSKLCFTKVRILNRNNQSSISSSKCGICLQSAKAGRGT---AIFTAE 169
Query: 639 CSHSFHLSCVNGLEDKR-----CPFCSAAWNHAPKSNYPAVNNNFGSDPIRRPEIREIKT 803
CSH+FH CV R CP C A+W ++ S +IRE K
Sbjct: 170 CSHTFHFPCVASRAGDRNLLSDCPVCGASWRETSLLPLSLSSSLHESGSESDSKIRESKN 229
Query: 804 G-KSLRVYNDDEPLAYSPVSLAQINTIHXXXXXXXXXXXXX--FPGFFRD--SSITSD-- 962
KSLRVYNDDEPL SP+S NTI F GF+ + S +T+
Sbjct: 230 NNKSLRVYNDDEPLISSPISRTGFNTIPESNEDEEEEDNDDGEFKGFYVNTPSPLTTKKM 289
Query: 963 MVPSISGNLEVKLLPESAVVETGKKKETHVVIMKLKASPSPSSITDAIKARRPSIDLVTV 1142
+ S++G+++VKL E+A+V G+ ET+ V+MK+K+ P+ ARR +DLVTV
Sbjct: 290 LTDSVTGHVDVKLSSEAAIVAVGRGNETYSVLMKIKSPSLPT-------ARRSPVDLVTV 342
Query: 1143 LDLSNGGANLQTVKHAMRSVISLLREMDRLSIVVFSTGSKRLMPLRRMTAKGRRSARRMV 1322
+D+S G N++ VK AMR VIS LRE DRLS+V FS+ SKRL PLRRMTA GRR ARR+V
Sbjct: 343 IDVSGG--NIEMVKRAMRQVISSLRETDRLSMVSFSSSSKRLTPLRRMTANGRRLARRIV 400
Query: 1323 DALGGMETTGGVGMSVNDALKKAVKVVEDRREKNPSTSIFVLSDGQDQPEAVLKAKLNAT 1502
D + G G GMSVNDA+KKA KV+EDRR+KN T+IFVL+D + +A+L
Sbjct: 401 DDISG----DGDGMSVNDAVKKAAKVIEDRRQKNLFTTIFVLTD--RNRNSAHQAQLAQ- 453
Query: 1503 RIPFVVSTTRFSRPEIPVHSVYIASPGALLHAPLRDAFTERIASLLNVTLHNVKLNLSLV 1682
P V++TRFS EIP H++++ GA HA D F +RI SLL++++ ++ LNL LV
Sbjct: 454 --PDFVTSTRFSHLEIPTHTIWL---GACNHALPEDVFAKRIKSLLSLSVQDLTLNLGLV 508
Query: 1683 NGSHLTEISSVYPLTGRLENFGSGSVIQVGDLFAEEEREFLVELKVPTSSSGSHQVMSVQ 1862
+GS +++SVY L+GR GSG +I++GD++ +EERE LVELK P SSS S ++M+V+
Sbjct: 509 SGSGQGKVTSVYSLSGRPVWLGSG-LIRLGDMYGDEEREVLVELKSP-SSSRSQRIMTVR 566
Query: 1863 SSIVDQMTHQPMTCPKEKRFLIPRPQSVRYVSSSIERLRNLHSMCRAVADSRRLIEREDL 2042
S VD T Q + +++ +IPRP +VR SI RLRNLH RAVA+SRRL+E D
Sbjct: 567 SRHVDPTT-QEIKNYEDRALMIPRPTTVRSSDPSIARLRNLHVSTRAVAESRRLVEVNDY 625
Query: 2043 SGAYQVLTTARS-----NASHSDDSLRSLEVELNELSRIKPRNSILNRTE---DKPEQLT 2198
SGA ++LT+AR+ S SD LR LE EL +L+R++ R+ + E K E LT
Sbjct: 626 SGAERMLTSARALLVQYGLSSSDSCLRGLEAELADLNRLRGRHVAVKSPEPVVQKSEPLT 685
Query: 2199 PTSAWRAAEKLAKVAIMRKHLNRVSDMHGLENAR 2300
PTSAWRAAE+LAKVAIMRKH+NRVSD+HG ENAR
Sbjct: 686 PTSAWRAAERLAKVAIMRKHMNRVSDLHGFENAR 719
>dbj|BAC41972.1| unknown protein [Arabidopsis thaliana]
Length = 739
Score = 464 bits (1195), Expect = e-129
Identities = 320/773 (41%), Positives = 427/773 (54%), Gaps = 57/773 (7%)
Frame = +3
Query: 153 MVFGWRKAFCTSVSSNQDKPQQHSSLHTTDPPIPTPRFRSKLGFLSNPXXXXXXXXXXXX 332
M+ G R+ F +S+ +D + SL P S+ GF SNP
Sbjct: 1 MMNGLRRTFWSSIHKKKDNNRVDDSLDRQKPTTT-----SRFGFFSNPSTPRSETRPDSV 55
Query: 333 X-------XXXXXXXXXVTIPSLPTSPKLHCRTTSNATPRTXXXXXXXXXXXXXXXXXXX 491
PSLP SPKL C T+ + TP
Sbjct: 56 TCSPTIPCQSWSATAISTPSPSLPASPKLQCDTSGDVTP---TRNRSPLSFLSVSSSSST 112
Query: 492 XXXXQGGGGVSLLRATL------LLNKSN------------------------SSRCAIC 581
+ SLL++ L +LN++N SS+C IC
Sbjct: 113 PSSPKSPASFSLLKSKLCFTKVRILNRNNQVNIFKNNSKLTFLRLCYEQSSISSSKCGIC 172
Query: 582 LQRVNSNQSNSTAAIFTAECSHSFHLSCVNGLEDKR-----CPFCSAAWNHAPKSNYPAV 746
LQ + + AIFTAECSH+FH CV R CP C A+W
Sbjct: 173 LQSAKAGRGT---AIFTAECSHTFHFPCVASRAGDRNLLSDCPVCGASWRETSLLPLSLS 229
Query: 747 NNNFGSDPIRRPEIREIKTG-KSLRVYNDDEPLAYSPVSLAQINTIHXXXXXXXXXXXXX 923
++ S +IRE K KSLRVYNDDEPL SP+S NTI
Sbjct: 230 SSLHESGSESDSKIRESKNNNKSLRVYNDDEPLISSPISRTGFNTIPESNEDEEEEDNDD 289
Query: 924 --FPGFFRD--SSITSD--MVPSISGNLEVKLLPESAVVETGKKKETHVVIMKLKASPSP 1085
F GF+ + S +T+ + S++G+++VKL E+A+V G+ ET+ V+MK+K+ P
Sbjct: 290 GEFKGFYVNTPSPLTTKKMLTDSVTGHVDVKLSSEAAIVAVGRGNETYSVLMKIKSPSLP 349
Query: 1086 SSITDAIKARRPSIDLVTVLDLSNGGANLQTVKHAMRSVISLLREMDRLSIVVFSTGSKR 1265
+ ARR +DLVTV+D+S G N+ VK AMR VIS LRE DRLS+V FS+ SKR
Sbjct: 350 T-------ARRSPVDLVTVIDVSGG--NIGMVKRAMRQVISSLRETDRLSMVSFSSSSKR 400
Query: 1266 LMPLRRMTAKGRRSARRMVDALGGMETTGGVGMSVNDALKKAVKVVEDRREKNPSTSIFV 1445
L PLRRMTA GRR ARR+VD + G G GMSVNDA+KKA KV+EDRR+KN T+IFV
Sbjct: 401 LTPLRRMTANGRRLARRIVDDISG----DGDGMSVNDAVKKAAKVIEDRRQKNLFTTIFV 456
Query: 1446 LSDGQDQPEAVLKAKLNATRIPFVVSTTRFSRPEIPVHSVYIASPGALLHAPLRDAFTER 1625
L+D + +A+L P V++TRFS EIP H++++ GA HA D F +R
Sbjct: 457 LTD--RNRNSAHQAQLAQ---PDFVTSTRFSHLEIPTHTIWL---GACNHALPEDVFAKR 508
Query: 1626 IASLLNVTLHNVKLNLSLVNGSHLTEISSVYPLTGRLENFGSGSVIQVGDLFAEEEREFL 1805
I SLL++++ ++ LNL LV+GS +++SVY L+GR GSG +I++GD++ +EERE L
Sbjct: 509 IKSLLSLSVQDLTLNLGLVSGSGQGKVTSVYSLSGRPVWLGSG-LIRLGDMYGDEEREVL 567
Query: 1806 VELKVPTSSSGSHQVMSVQSSIVDQMTHQPMTCPKEKRFLIPRPQSVRYVSSSIERLRNL 1985
VELK P SSS S ++M+V+S VD T Q + +++ +IPRP +VR SI RLRNL
Sbjct: 568 VELKSP-SSSRSQRIMTVRSRHVDPTT-QEIKNYEDRALMIPRPTTVRSSDPSIARLRNL 625
Query: 1986 HSMCRAVADSRRLIEREDLSGAYQVLTTARS-----NASHSDDSLRSLEVELNELSRIKP 2150
H RAVA+SRRL+E D SGA ++LT+AR+ S SD LR LE EL +L+R++
Sbjct: 626 HVSTRAVAESRRLVEVNDYSGAERMLTSARALLVQYGLSSSDSCLRGLEAELADLNRLRG 685
Query: 2151 RNSILNRTE---DKPEQLTPTSAWRAAEKLAKVAIMRKHLNRVSDMHGLENAR 2300
R+ + E K E LTPTSAWRAAE+LAKVAIMRKH+NRVSD+HG ENAR
Sbjct: 686 RHVAVKSPEPVVQKSEPLTPTSAWRAAERLAKVAIMRKHMNRVSDLHGFENAR 738
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 131
effective length of database: 253,773,515
effective search space used: 167490519900
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)