BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.1.cl.141.Contig1
(1915 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191926.1| scarecrow-like 6 (SCL6); protein id: At4g0... 686 0.0
pir||T51237 scarecrow-like protein 6 [imported] - Arabidops... 440 0.0
gb|AAO42084.1| putative SCARECROW gene regulator [Arabidops... 185 1e-88
ref|NP_182041.1| putative SCARECROW gene regulator; protein... 184 1e-88
ref|NP_191622.1| scarecrow - like protein; protein id: At3g... 194 7e-84
>ref|NP_191926.1| scarecrow-like 6 (SCL6); protein id: At4g00150.1, supported by cDNA:
gi_18087576 [Arabidopsis thaliana]|gi|7486541|pir||T01343
hypothetical protein F6N15.20 - Arabidopsis
thaliana|gi|3193314|gb|AAC19296.1| contains similarity to
Arabidopsis scarecrow (GB:U62798) [Arabidopsis
thaliana]|gi|7267102|emb|CAB80773.1| scarecrow-like 6
(SCL6) [Arabidopsis
thaliana]|gi|18087577|gb|AAL58919.1|AF462831_1
AT4g00150/F6N15_20 [Arabidopsis
thaliana]|gi|22137044|gb|AAM91367.1| At4g00150/F6N15_20
[Arabidopsis thaliana]
Length = 558
Score = 686 bits (1771), Expect(3) = 0.0
Identities = 349/401 (87%), Positives = 349/401 (87%)
Frame = -2
Query: 1779 MPLPFEEFQGKGIXXXXXXXXXXXXXXXXXXXSHRKARGGXXXXXEVPAAEPTXXXXXXX 1600
MPLPFEEFQGKGI SHRKARGG EVPAAEPT
Sbjct: 1 MPLPFEEFQGKGISCFSSFSSSFPQPPSSPLLSHRKARGGEEEEEEVPAAEPTSVLDSLI 60
Query: 1599 XXXXXXXXXXXXXXXXXXXXXGDATTDEQCGAIGLGDWEEQVPHDHEQSILGLIMGDSTD 1420
GDATTDEQCGAIGLGDWEEQVPHDHEQSILGLIMGDSTD
Sbjct: 61 SPTSSSTVSSSHGGNSAVGGGGDATTDEQCGAIGLGDWEEQVPHDHEQSILGLIMGDSTD 120
Query: 1419 PSLELNSILQTSPTFHDSDYSSPGFGVVDTGFGLDHHSVPPSHVSGLLINQSQTHYTQNP 1240
PSLELNSILQTSPTFHDSDYSSPGFGVVDTGFGLDHHSVPPSHVSGLLINQSQTHYTQNP
Sbjct: 121 PSLELNSILQTSPTFHDSDYSSPGFGVVDTGFGLDHHSVPPSHVSGLLINQSQTHYTQNP 180
Query: 1239 AAIFYGHHHHTPPPAKRLNPGPVGITEQLVKAAEVIESDTCLAQGILARLNQQLSSPVGK 1060
AAIFYGHHHHTPPPAKRLNPGPVGITEQLVKAAEVIESDTCLAQGILARLNQQLSSPVGK
Sbjct: 181 AAIFYGHHHHTPPPAKRLNPGPVGITEQLVKAAEVIESDTCLAQGILARLNQQLSSPVGK 240
Query: 1059 PLERAAFYFKEALNNLLHNVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLES 880
PLERAAFYFKEALNNLLHNVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLES
Sbjct: 241 PLERAAFYFKEALNNLLHNVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLES 300
Query: 879 FHGFHRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDN 700
FHGFHRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDN
Sbjct: 301 FHGFHRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDN 360
Query: 699 LKHFASEINISLDIQVLSLDLLGSISWPNSSEKEAVAVNIS 577
LKHFASEINISLDIQVLSLDLLGSISWPNSSEKEAVAVNIS
Sbjct: 361 LKHFASEINISLDIQVLSLDLLGSISWPNSSEKEAVAVNIS 401
Score = 246 bits (628), Expect(3) = 0.0
Identities = 120/123 (97%), Positives = 121/123 (97%)
Frame = -1
Query: 472 PSLKQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTW 293
P +QLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTW
Sbjct: 436 PFSQQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTW 495
Query: 292 QAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRC 113
QAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRC
Sbjct: 496 QAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRC 555
Query: 112 RSS 104
RSS
Sbjct: 556 RSS 558
Score = 81.3 bits (199), Expect(3) = 0.0
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = -3
Query: 575 AASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQ 462
AASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQ
Sbjct: 402 AASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQ 439
>pir||T51237 scarecrow-like protein 6 [imported] - Arabidopsis thaliana
(fragment)|gi|4580519|gb|AAD24406.1|AF036303_1
scarecrow-like 6 [Arabidopsis thaliana]
Length = 378
Score = 440 bits (1132), Expect(3) = 0.0
Identities = 221/221 (100%), Positives = 221/221 (100%)
Frame = -2
Query: 1239 AAIFYGHHHHTPPPAKRLNPGPVGITEQLVKAAEVIESDTCLAQGILARLNQQLSSPVGK 1060
AAIFYGHHHHTPPPAKRLNPGPVGITEQLVKAAEVIESDTCLAQGILARLNQQLSSPVGK
Sbjct: 1 AAIFYGHHHHTPPPAKRLNPGPVGITEQLVKAAEVIESDTCLAQGILARLNQQLSSPVGK 60
Query: 1059 PLERAAFYFKEALNNLLHNVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLES 880
PLERAAFYFKEALNNLLHNVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLES
Sbjct: 61 PLERAAFYFKEALNNLLHNVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLES 120
Query: 879 FHGFHRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDN 700
FHGFHRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDN
Sbjct: 121 FHGFHRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDN 180
Query: 699 LKHFASEINISLDIQVLSLDLLGSISWPNSSEKEAVAVNIS 577
LKHFASEINISLDIQVLSLDLLGSISWPNSSEKEAVAVNIS
Sbjct: 181 LKHFASEINISLDIQVLSLDLLGSISWPNSSEKEAVAVNIS 221
Score = 246 bits (628), Expect(3) = 0.0
Identities = 120/123 (97%), Positives = 121/123 (97%)
Frame = -1
Query: 472 PSLKQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTW 293
P +QLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTW
Sbjct: 256 PFSQQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTW 315
Query: 292 QAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRC 113
QAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRC
Sbjct: 316 QAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRC 375
Query: 112 RSS 104
RSS
Sbjct: 376 RSS 378
Score = 81.3 bits (199), Expect(3) = 0.0
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = -3
Query: 575 AASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQ 462
AASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQ
Sbjct: 222 AASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQ 259
>gb|AAO42084.1| putative SCARECROW gene regulator [Arabidopsis thaliana]
Length = 640
Score = 185 bits (469), Expect(3) = 1e-88
Identities = 120/231 (51%), Positives = 151/231 (64%), Gaps = 29/231 (12%)
Frame = -2
Query: 1185 NPGPVG-----ITEQLVKAAEVIES-------DTCLAQGILARLNQQL--SSPVGKPLER 1048
+PG G I EQL AAE+I + T LAQGILARLN L SS P +R
Sbjct: 257 SPGMAGDDQSVIIEQLFNAAELIGTTGNNNGDQTVLAQGILARLNHHLNTSSNHKSPFQR 316
Query: 1047 AAFYFKEALNNLLHNVSQT--LNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLESFH 874
AA + EAL +L+HN S + P +LI +IAAY+SFSE SP LQF NFT+NQ++LES +
Sbjct: 317 AASHIAEALLSLIHNESSPPLITPENLILRIAAYRSFSETSPFLQFVNFTANQSILESCN 376
Query: 873 --GFHRLHIIDFDIGYGGQWASLMQELV-----LRDNAAPLSLKITVFASPAN--HDQLE 721
GF R+HIIDFD+GYGGQW+SLMQEL R N A SLK+TVFA P + D+ E
Sbjct: 377 ESGFDRIHIIDFDVGYGGQWSSLMQELASGVGGRRRNRAS-SLKLTVFAPPPSTVSDEFE 435
Query: 720 LGFTQDNLKHFASEINISLDIQVLSLD-LLGSISWP---NSSEKEAVAVNI 580
L FT++NLK FA E+ I +I++LS++ LL WP SSEKEA+AVN+
Sbjct: 436 LRFTEENLKTFAGEVKIPFEIELLSVELLLNPAYWPLSLRSSEKEAIAVNL 486
Score = 131 bits (330), Expect(3) = 1e-88
Identities = 69/120 (57%), Positives = 84/120 (69%)
Frame = -1
Query: 472 PSLKQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTW 293
P + HSL HT+L ESLDA N N D IERF +QP IEKL++ R R IER W
Sbjct: 524 PFPNAVIHSLQYHTSLLESLDA-NQNQDD-SSIERFWVQPSIEKLLMKRHRWIERSP-PW 580
Query: 292 QAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRC 113
+ +F Q GFSP + S E+QAECL+QR PVRGFHVEK+ +SL++CWQR ELV VSAW+C
Sbjct: 581 RILFTQCGFSPASLSQMAEAQAECLLQRNPVRGFHVEKRQSSLVMCWQRKELVTVSAWKC 640
Score = 56.2 bits (134), Expect(3) = 1e-88
Identities = 25/41 (60%), Positives = 32/41 (77%)
Frame = -3
Query: 590 PLTSPAASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPF 468
P+ S A+ + LPL+LRF+K LSP I+VCSDRGC+R D PF
Sbjct: 487 PVNSVASGY--LPLILRFLKQLSPNIVVCSDRGCDRNDAPF 525
Score = 38.9 bits (89), Expect = 0.28
Identities = 55/228 (24%), Positives = 67/228 (29%), Gaps = 27/228 (11%)
Frame = -2
Query: 1779 MPLPFEEFQGKGIXXXXXXXXXXXXXXXXXXXSHRKAR--------GG-----XXXXXEV 1639
MPL FE FQG+G+ +A+ GG +
Sbjct: 1 MPLSFERFQGEGVFGLSSSSFYSDSQKIWSNQDKTEAKQEDLGYVVGGFLPEPTSVLDAL 60
Query: 1638 PAAEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDATTDEQCGAIGLGDWEEQVPHD-- 1465
+ P GD + +C +GL D + +
Sbjct: 61 RSPSPLASYSSTTTTLSSSHGGGGTTVTNTTVTAGDDNNNNKCSQMGLDDLDGVLSASSP 120
Query: 1464 -HEQSILGLIMGDSTDPSLELNSILQTSPTFHDSDYSSPGFGVVDTGFGLDHH----SVP 1300
EQSIL LIM DP FGV D GFG S P
Sbjct: 121 GQEQSILRLIM----DPG--------------------SAFGVFDPGFGFGSGSGPVSAP 156
Query: 1299 PSHVSGLLINQSQTHYTQNPAAIFYGHHHH-------TPPPAKRLNPG 1177
S S LL N T NPA +H PPAKR N G
Sbjct: 157 VSDNSNLLCNFPFQEIT-NPAEALINPSNHCLFYNPPLSPPAKRFNSG 203
>ref|NP_182041.1| putative SCARECROW gene regulator; protein id: At2g45160.1
[Arabidopsis thaliana]|gi|25408931|pir||B84887 probable
SCARECROW gene regulator [imported] - Arabidopsis
thaliana
Length = 640
Score = 184 bits (468), Expect(3) = 1e-88
Identities = 120/231 (51%), Positives = 151/231 (64%), Gaps = 29/231 (12%)
Frame = -2
Query: 1185 NPGPVG-----ITEQLVKAAEVIESD-------TCLAQGILARLNQQL--SSPVGKPLER 1048
+PG G I EQL AAE+I + T LAQGILARLN L SS P +R
Sbjct: 257 SPGMAGDDQSVIIEQLFNAAELIGTTGNNNGDHTVLAQGILARLNHHLNTSSNHKSPFQR 316
Query: 1047 AAFYFKEALNNLLHNVSQT--LNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLESFH 874
AA + EAL +L+HN S + P +LI +IAAY+SFSE SP LQF NFT+NQ++LES +
Sbjct: 317 AASHIAEALLSLIHNESSPPLITPENLILRIAAYRSFSETSPFLQFVNFTANQSILESCN 376
Query: 873 --GFHRLHIIDFDIGYGGQWASLMQELV-----LRDNAAPLSLKITVFASPAN--HDQLE 721
GF R+HIIDFD+GYGGQW+SLMQEL R N A SLK+TVFA P + D+ E
Sbjct: 377 ESGFDRIHIIDFDVGYGGQWSSLMQELASGVGGRRRNRAS-SLKLTVFAPPPSTVSDEFE 435
Query: 720 LGFTQDNLKHFASEINISLDIQVLSLD-LLGSISWP---NSSEKEAVAVNI 580
L FT++NLK FA E+ I +I++LS++ LL WP SSEKEA+AVN+
Sbjct: 436 LRFTEENLKTFAGEVKIPFEIELLSVELLLNPAYWPLSLRSSEKEAIAVNL 486
Score = 131 bits (330), Expect(3) = 1e-88
Identities = 69/120 (57%), Positives = 84/120 (69%)
Frame = -1
Query: 472 PSLKQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTW 293
P + HSL HT+L ESLDA N N D IERF +QP IEKL++ R R IER W
Sbjct: 524 PFPNAVIHSLQYHTSLLESLDA-NQNQDD-SSIERFWVQPSIEKLLMKRHRWIERSP-PW 580
Query: 292 QAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRC 113
+ +F Q GFSP + S E+QAECL+QR PVRGFHVEK+ +SL++CWQR ELV VSAW+C
Sbjct: 581 RILFTQCGFSPASLSQMAEAQAECLLQRNPVRGFHVEKRQSSLVMCWQRKELVTVSAWKC 640
Score = 56.2 bits (134), Expect(3) = 1e-88
Identities = 25/41 (60%), Positives = 32/41 (77%)
Frame = -3
Query: 590 PLTSPAASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPF 468
P+ S A+ + LPL+LRF+K LSP I+VCSDRGC+R D PF
Sbjct: 487 PVNSVASGY--LPLILRFLKQLSPNIVVCSDRGCDRNDAPF 525
Score = 38.9 bits (89), Expect = 0.28
Identities = 55/228 (24%), Positives = 67/228 (29%), Gaps = 27/228 (11%)
Frame = -2
Query: 1779 MPLPFEEFQGKGIXXXXXXXXXXXXXXXXXXXSHRKAR--------GG-----XXXXXEV 1639
MPL FE FQG+G+ +A+ GG +
Sbjct: 1 MPLSFERFQGEGVFGLSSSSFYSDSQKIWSNQDKTEAKQEDLGYVVGGFLPEPTSVLDAL 60
Query: 1638 PAAEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDATTDEQCGAIGLGDWEEQVPHD-- 1465
+ P GD + +C +GL D + +
Sbjct: 61 RSPSPLASYSSTTTTLSSSHGGGGTTVTNTTVTAGDDNNNNKCSQMGLDDLDGVLSASSP 120
Query: 1464 -HEQSILGLIMGDSTDPSLELNSILQTSPTFHDSDYSSPGFGVVDTGFGLDHH----SVP 1300
EQSIL LIM DP FGV D GFG S P
Sbjct: 121 GQEQSILRLIM----DPG--------------------SAFGVFDPGFGFGSGSGPVSAP 156
Query: 1299 PSHVSGLLINQSQTHYTQNPAAIFYGHHHH-------TPPPAKRLNPG 1177
S S LL N T NPA +H PPAKR N G
Sbjct: 157 VSDNSNLLCNFPFQEIT-NPAEALINPSNHCLFYNPPLSPPAKRFNSG 203
>ref|NP_191622.1| scarecrow - like protein; protein id: At3g60630.1, supported by cDNA:
gi_17381211, supported by cDNA: gi_20465816 [Arabidopsis
thaliana]|gi|11358821|pir||T47874 scarecrow-like protein
- Arabidopsis thaliana|gi|7329673|emb|CAB82667.1|
scarecrow-like protein [Arabidopsis
thaliana]|gi|17381212|gb|AAL36418.1| putative scarecrow
protein [Arabidopsis thaliana]|gi|20465817|gb|AAM20013.1|
putative scarecrow protein [Arabidopsis thaliana]
Length = 623
Score = 194 bits (492), Expect(3) = 7e-84
Identities = 161/479 (33%), Positives = 216/479 (44%), Gaps = 79/479 (16%)
Frame = -2
Query: 1779 MPLPFEEFQGKGIXXXXXXXXXXXXXXXXX-XXSHRKAR---------GGXXXXXEVPAA 1630
MPLPFE+FQGKG+ H + GG V +
Sbjct: 1 MPLPFEQFQGKGVLGFLDSSSSPGYKIWANPEKLHGRVEEDLCFVVNNGGFSEPTSVLDS 60
Query: 1629 EPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDATTDEQCGAIGLGDWEEQVPHD---HE 1459
+ D +C +G D + + E
Sbjct: 61 VRSPSPFVSSSTTTLSSSHGGPSGGGAAAATFSGA-DGKCDQMGFEDLDGVLSGGSPGQE 119
Query: 1458 QSILGLIM-GDSTDPSLELNSILQTSPTFHDSDYSSPGFGVVDTGFGLDHHSVPPSHVSG 1282
QSI LIM GD DP E S + D +P FG +G + P
Sbjct: 120 QSIFRLIMAGDVVDPGSEFVGFDIGSGSDPVIDNPNPLFG-----YGFPFQNAPEEEKFQ 174
Query: 1281 LLINQSQTHYTQNPAAIFYGHHHHTPPPAKRLNPGPVG---------------------- 1168
+ IN + ++ P++ PPAKRLN G G
Sbjct: 175 ISINPNPGFFSDPPSS----------PPAKRLNSGQPGSQHLQWVFPFSDPGHESHDPFL 224
Query: 1167 ------------------ITEQLVKAAEVI-----ESDTCLAQGILARLNQQLSSPVGK- 1060
I +QL AA + +++ LAQGILARLN L++
Sbjct: 225 TPPKIAGEDQNDQDQSAVIIDQLFSAAAELTTNGGDNNPVLAQGILARLNHNLNNNNDDT 284
Query: 1059 ------PLERAAFYFKEALNNLLHNVSQT----LNPYSLIFKIAAYKSFSEISPVLQFAN 910
P RAA Y EAL++LL + S + P +LIF+IAAY++FSE SP LQF N
Sbjct: 285 NNNPKPPFHRAASYITEALHSLLQDSSLSPPSLSPPQNLIFRIAAYRAFSETSPFLQFVN 344
Query: 909 FTSNQALLESFHGFHRLHIIDFDIGYGGQWASLMQELV---LRDNAAPLSLKITVFASPA 739
FT+NQ +LESF GF R+HI+DFDIGYGGQWASL+QEL R ++AP SLKIT FASP+
Sbjct: 345 FTANQTILESFEGFDRIHIVDFDIGYGGQWASLIQELAGKRNRSSSAP-SLKITAFASPS 403
Query: 738 N-HDQLELGFTQDNLKHFASEINISLDIQVLSLD-LLGSISWP----NSSEKEAVAVNI 580
D+ EL FT++NL+ FA E +S +I++L+++ LL WP SSEKEA+AVN+
Sbjct: 404 TVSDEFELRFTEENLRSFAGETGVSFEIELLNMEILLNPTYWPLSLFRSSEKEAIAVNL 462
Score = 115 bits (288), Expect(3) = 7e-84
Identities = 63/129 (48%), Positives = 87/129 (66%), Gaps = 4/129 (3%)
Frame = -1
Query: 487 RGRICPSLKQLAHSLHSHTALFESLDAVNAN-LDAMQKIERFLIQPEIEKLVLDRSRPIE 311
R P + ++L +T+L ESLD+ N N +A IERF +QP I+KL+ +R R +E
Sbjct: 496 RNNDAPFPNGVINALQYYTSLLESLDSGNLNNAEAATSIERFCVQPSIQKLLTNRYRWME 555
Query: 310 RPMMTWQAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHN---SLLLCWQRTE 140
R W+++F Q GF+PVT S E+QAE L+QR P+RGFH+EK+ + SL+LCWQR E
Sbjct: 556 RSP-PWRSLFGQCGFTPVTLSQTAETQAEYLLQRNPMRGFHLEKRQSSSPSLVLCWQRKE 614
Query: 139 LVGVSAWRC 113
LV VSAW+C
Sbjct: 615 LVTVSAWKC 623
Score = 47.4 bits (111), Expect(3) = 7e-84
Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -3
Query: 590 PLTSPAASFSHLPLVLRFVKHLSPTIIVCSDRGCER-TDLPF 468
P++S + + LPL+LRF+K +SP ++VCSDR C+R D PF
Sbjct: 463 PISSMVSGY--LPLILRFLKQISPNVVVCSDRSCDRNNDAPF 502
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 129
effective length of database: 256,451,607
effective search space used: 130277416356
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)