BLAST Search Results

BLASTX 1.4.13-Paracel [2002-12-12] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PTA.CL.1.cl.126.Contig1 (1683 letters) Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 1,339,046 sequences; 429,188,541 total letters Searching...................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAC41821.1|  unknown protein [Arabidopsis thaliana]           740   0.0  
ref|NP_680661.1|  hypothetical protein; protein id: At4g0859...    54   7e-06
dbj|BAC41854.1|  unknown protein [Arabidopsis thaliana]            48   5e-04
ref|NP_036127.1|  caspase 8 associated protein 2; DNA segmen...    39   0.32 
ref|NP_473027.1|  hypothetical protein [Plasmodium falciparu...    39   0.32

>dbj|BAC41821.1| unknown protein [Arabidopsis thaliana]
          Length = 394

 Score =  740 bits (1911), Expect = 0.0
 Identities = 368/394 (93%), Positives = 369/394 (93%)
 Frame = +2

Query: 479  MKTSPSIICILFREAMLFWSSCSSSVPVKILPASNLNLILPMVSFHGLDLQFCWQSFGPY 658
            MKTSPSIICILFREAMLFWSSCSSSVPVKILPASNLNLILPMVSFHGLDLQFCWQSFGPY
Sbjct: 1    MKTSPSIICILFREAMLFWSSCSSSVPVKILPASNLNLILPMVSFHGLDLQFCWQSFGPY 60

Query: 659  CISSRPIYVDFGPISFSTWPRSVPFNLYYNPLIMPPSCIISSNVLSXXXXXXXXXXVCYC 838
            CISSRPIYVDFGPISFSTWPRSVPFNLYYNPLIMPPSCIISSNVLS          VCYC
Sbjct: 61   CISSRPIYVDFGPISFSTWPRSVPFNLYYNPLIMPPSCIISSNVLSLMTTTMTTLLVCYC 120

Query: 839  SQRLSFPLKKSSRIILEERIVKKILMLCDPVWLRQWHVRVSLFALSGLYLPVFIFITHRL 1018
            SQRLSFPLKKSSRIILEERIVKKILMLCDPVWLRQWHVRVSLFALSGLYLPVFIFITHRL
Sbjct: 121  SQRLSFPLKKSSRIILEERIVKKILMLCDPVWLRQWHVRVSLFALSGLYLPVFIFITHRL 180

Query: 1019 KHHKIDFNQHPQSSSVHILNWFQISKKVSAIVRKAFDLRFRALNLPLSDLKGPFYPNSST 1198
            KHHKIDFNQHPQSSSVHILNWFQISKKVSAIVRKAFDLRFRALNLPLSDLKGPFYPNSST
Sbjct: 181  KHHKIDFNQHPQSSSVHILNWFQISKKVSAIVRKAFDLRFRALNLPLSDLKGPFYPNSST 240

Query: 1199 KERHLVLNSSFMERSLFSPSSFMERTLSSNHHLRFLVLKLRNRLRILTVLLSFVVEDVSC 1378
            KERHLVLNSSFMERSLFSPSSFMERT+SSN HLRFLVLKLRNRLRILTVLLSFVVEDVSC
Sbjct: 241  KERHLVLNSSFMERSLFSPSSFMERTVSSNDHLRFLVLKLRNRLRILTVLLSFVVEDVSC 300

Query: 1379 FAPAKLKVMGSFSTSQWQCLVTNPLLDLFVDVSSTLQCLVCFKMXXXXXXXXXXXXXXYY 1558
            FAPAKLKVMGSFSTSQWQCLVTNPLLDLFVDVSSTLQCLVCFKM              YY
Sbjct: 301  FAPAKLKVMGSFSTSQWQCLVTNPLLDLFVDVSSTLQCLVCFKMLFSSCLLALLDLRSYY 360

Query: 1559 RIYLCFAFLNALSFDVLNSEFFELLWISVIFLFV 1660
            RIYLCFAFLNALSFDVLNSEFFELLWISVIFLFV
Sbjct: 361  RIYLCFAFLNALSFDVLNSEFFELLWISVIFLFV 394

>ref|NP_680661.1| hypothetical protein; protein id: At4g08593.1 [Arabidopsis thaliana]
          Length = 270

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 52/142 (36%), Positives = 66/142 (45%), Gaps = 1/142 (0%)
 Frame = +2

Query: 1235 ERSLFSPSSFMERTLSSNHHLRFLVLKLRNRLRILTVLLSFVVEDVSCFAPAKLKVMGSF 1414
            E+ LFS   FMERT+ S              L  LT+LL+  VEDV    PA+  VM SF
Sbjct: 145  EKKLFS---FMERTIPSC-------------LFFLTILLT-CVEDVMRLDPARPTVMESF 187

Query: 1415 STSQWQCLVT-NPLLDLFVDVSSTLQCLVCFKMXXXXXXXXXXXXXXYYRIYLCFAFLNA 1591
             TS+ +  VT +   +LFV+V +T   + C KM              +Y  YL  A   A
Sbjct: 188  LTSRCRMTVTTHQPPELFVEVLATNHDVACGKMLFSSCLQLFVDLQSFYPNYLYVASTCA 247

Query: 1592 LSFDVLNSEFFELLWISVIFLF 1657
            LS       F+EL  I VIF F
Sbjct: 248  LSLSFKALMFWELFSIFVIFCF 269

>dbj|BAC41854.1| unknown protein [Arabidopsis thaliana]
          Length = 247

 Score = 47.8 bits (112), Expect = 5e-04
 Identities = 62/217 (28%), Positives = 79/217 (35%), Gaps = 20/217 (9%)
 Frame = +2

Query: 38  LPGTIFETPSLAMFSDAGGVLTRRRRDVSSSLSFLFKTCSF*FCFLSIFANLDLFL---- 205
           L  TI ET +  MFSDAG V  RRRRD+               CF   F NL  FL    
Sbjct: 21  LSNTIIETITFTMFSDAGRVFARRRRDI--------------VCFSQSFRNLSRFLLHLF 66

Query: 206 --FLASS------HGVSEICDRERRCVPASLLLPYPLFTTLVSKSSKEESLDSNCFSSLK 361
             F   S      HGV    D   R  PA+     P+       S KEE + S+   + K
Sbjct: 67  IIFYHPSLLSPCFHGVPLYRDNINRGFPAN-----PVSLIRPVNSVKEEPMSSHS-PNAK 120

Query: 362 YEICLTVXXXXXXXXXXXXXPEELSHRI-SSTILLPPRVLMK-----TSPSIICILFREA 523
           +E CL                    +RI S T L  P  LM+     T   ++ IL  E 
Sbjct: 121 FESCLPKISRSLKSRTFAILVAHYLYRIPSKTNLSSPSSLMEWRADLTLKPVMMILTAEV 180

Query: 524 ML--FWSSCSSSVPVKILPASNLNLILPMVSFHGLDL 628
           ++      C S +         +N I P  +  G  L
Sbjct: 181 LILNLTKPCCSFIASYPYTCGGINNISPTEATLGFSL 217

>ref|NP_036127.1| caspase 8 associated protein 2; DNA segment, Chr 4, ERATO Doi 659,
           expressed [Mus
           musculus]|gi|4754905|gb|AAD29045.1|AF132726_1 FLASH [Mus
           musculus]
          Length = 1962

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 50/186 (26%), Positives = 70/186 (36%), Gaps = 10/186 (5%)
 Frame = -1

Query: 555 TDDEHELQNNMASRNKMQMMLGEVFIKTRGGRSIVDDIR*ESSSGRPERDL-------DP 397
           T  E    NN+ SR+  Q+  G      R GRS     +    + R ++DL       +P
Sbjct: 210 TGVEKHCANNVWSRSPYQVGEGNSNEDNRRGRSGTRHSQCSRGTDRTQKDLHSSCNDSEP 269

Query: 396 LDPRETVRQISYFKDEKQLESRDSSFDDFETNVVNRGYGRRRLAGTHLLSLSHISETPWE 217
            D     R   + +     E+R  S      +    GY   R A       S   ET  E
Sbjct: 270 RDKEANSRLQGHPEKHGNSEARTESKISESKSSTGMGYKSERSAS------SWEKETSRE 323

Query: 216 EAKKRNRSKFAKIERKQN*NEQVLKRK--LREDETSRRRRVKTPPASENMANDG-VSKMV 46
               R  S+  K   KQN   Q + RK    +D+T R+  VK  PA E   + G V + +
Sbjct: 324 RPHTRVESQHDKNLEKQNERLQNMHRKELPSQDKTERKVDVKFKPAGEEQGHRGRVDRAL 383

Query: 45  PGRELN 28
           P    N
Sbjct: 384 PPHPKN 389

>ref|NP_473027.1| hypothetical protein [Plasmodium falciparum
           3D7]|gi|7494297|pir||F71613 hypothetical protein
           PFB0495w - malaria parasite (Plasmodium
           falciparum)|gi|3845199|gb|AAC71888.1| hypothetical
           protein [Plasmodium falciparum 3D7]
          Length = 1121

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 26/71 (36%), Positives = 39/71 (54%)
 Frame = +1

Query: 688 FWPNFFFNLAQVCSFQPILQPINHASKLHHFFKCLKLNDYNYDDIISVLLLSTAQFPVEE 867
           F  N FF+  ++  F  I     H  K +++FKC KL +   +DIIS+LLL+ ++F  + 
Sbjct: 648 FLNNLFFD--KIIHFHYIYNLWCHVYKTYNYFKCNKLIN---EDIISLLLLTCSKF--QY 700

Query: 868 IISNNFGRTYC 900
            I NN    YC
Sbjct: 701 FIENNSNDRYC 711

  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 128
effective length of database: 257,790,653
effective search space used: 111365562096
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLAST Search Results