BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.009.Contig1
(581 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_683303.1| Expressed protein; protein id: At1g13245.1... 87 2e-16
ref|NP_565910.1| Expressed protein; protein id: At2g39705.1... 45 6e-04
dbj|BAB63685.1| P0518C01.24 [Oryza sativa (japonica cultiva... 44 0.001
dbj|BAC42834.1| unknown protein [Arabidopsis thaliana] 42 0.004
ref|NP_671897.1| unknown protein; protein id: At2g29125.1 [... 42 0.005
>ref|NP_683303.1| Expressed protein; protein id: At1g13245.1, supported by cDNA:
gi_13272454 [Arabidopsis
thaliana]|gi|4850407|gb|AAD31077.1|AC007357_26 EST
gb|T21221 comes from this gene. [Arabidopsis
thaliana]|gi|13272455|gb|AAK17166.1|AF325098_1 unknown
protein [Arabidopsis
thaliana]|gi|21618202|gb|AAM67252.1| unknown
[Arabidopsis thaliana]
Length = 41
Score = 86.7 bits (213), Expect = 2e-16
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +3
Query: 90 MKMGGSKRRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 212
MKMGGSKRRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD
Sbjct: 1 MKMGGSKRRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 41
>ref|NP_565910.1| Expressed protein; protein id: At2g39705.1, supported by cDNA:
27620. [Arabidopsis thaliana]|gi|20197045|gb|AAM14893.1|
Expressed protein [Arabidopsis
thaliana]|gi|21555300|gb|AAM63828.1| unknown
[Arabidopsis thaliana]|gi|26450322|dbj|BAC42277.1|
unknown protein [Arabidopsis thaliana]
Length = 87
Score = 45.1 bits (105), Expect = 6e-04
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 63 LPNSIDISKMKMGGSK--RRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 212
+ S S G K R ++ ++KEQRA+ YI+RRCV+ML+CW D
Sbjct: 31 ITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRD 82
>dbj|BAB63685.1| P0518C01.24 [Oryza sativa (japonica
cultivar-group)]|gi|20160923|dbj|BAB89859.1| P0698H10.2
[Oryza sativa (japonica cultivar-group)]
Length = 149
Score = 44.3 bits (103), Expect = 0.001
Identities = 20/42 (47%), Positives = 29/42 (68%)
Frame = +3
Query: 87 KMKMGGSKRRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 212
+ + + +R+S K + AV KE RA+ YI+RRCV ML+CW D
Sbjct: 108 QQQQSNNSQRLSKKCVEAV-KEHRARFYIVRRCVSMLVCWRD 148
>dbj|BAC42834.1| unknown protein [Arabidopsis thaliana]
Length = 107
Score = 42.4 bits (98), Expect = 0.004
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3
Query: 69 NSIDISKMKMGGSKRRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWH 209
+S IS+ K ++ K ++ KEQ+ + YI+RRCV ML+CWH
Sbjct: 58 SSSSISRSSSKKEKGSITQK-YSSLAKEQKGRFYIMRRCVAMLVCWH 103
>ref|NP_671897.1| unknown protein; protein id: At2g29125.1 [Arabidopsis
thaliana]|gi|22530996|gb|AAM97002.1| unknown protein
[Arabidopsis thaliana]|gi|23197786|gb|AAN15420.1|
unknown protein [Arabidopsis thaliana]
Length = 115
Score = 42.0 bits (97), Expect = 0.005
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +3
Query: 138 AVLKEQRAKLYIIRRCVVMLLCWH 209
++ KEQ+A+ YI+RRCV ML+CWH
Sbjct: 87 SLAKEQKARFYIMRRCVAMLVCWH 110
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 116
effective length of database: 273,859,205
effective search space used: 21087158785
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)