BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.009.Contig1
         (581 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_683303.1|  Expressed protein; protein id: At1g13245.1...    87   2e-16
ref|NP_565910.1|  Expressed protein; protein id: At2g39705.1...    45   6e-04
dbj|BAB63685.1|  P0518C01.24 [Oryza sativa (japonica cultiva...    44   0.001
dbj|BAC42834.1|  unknown protein [Arabidopsis thaliana]            42   0.004
ref|NP_671897.1|  unknown protein; protein id: At2g29125.1 [...    42   0.005
>ref|NP_683303.1| Expressed protein; protein id: At1g13245.1, supported by cDNA:
           gi_13272454 [Arabidopsis
           thaliana]|gi|4850407|gb|AAD31077.1|AC007357_26 EST
           gb|T21221 comes from this gene. [Arabidopsis
           thaliana]|gi|13272455|gb|AAK17166.1|AF325098_1 unknown
           protein [Arabidopsis
           thaliana]|gi|21618202|gb|AAM67252.1| unknown
           [Arabidopsis thaliana]
          Length = 41

 Score = 86.7 bits (213), Expect = 2e-16
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +3

Query: 90  MKMGGSKRRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 212
           MKMGGSKRRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD
Sbjct: 1   MKMGGSKRRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 41
>ref|NP_565910.1| Expressed protein; protein id: At2g39705.1, supported by cDNA:
           27620. [Arabidopsis thaliana]|gi|20197045|gb|AAM14893.1|
           Expressed protein [Arabidopsis
           thaliana]|gi|21555300|gb|AAM63828.1| unknown
           [Arabidopsis thaliana]|gi|26450322|dbj|BAC42277.1|
           unknown protein [Arabidopsis thaliana]
          Length = 87

 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 63  LPNSIDISKMKMGGSK--RRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 212
           +  S   S     G K  R   ++    ++KEQRA+ YI+RRCV+ML+CW D
Sbjct: 31  ITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRD 82
>dbj|BAB63685.1| P0518C01.24 [Oryza sativa (japonica
           cultivar-group)]|gi|20160923|dbj|BAB89859.1| P0698H10.2
           [Oryza sativa (japonica cultivar-group)]
          Length = 149

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 20/42 (47%), Positives = 29/42 (68%)
 Frame = +3

Query: 87  KMKMGGSKRRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 212
           + +   + +R+S K + AV KE RA+ YI+RRCV ML+CW D
Sbjct: 108 QQQQSNNSQRLSKKCVEAV-KEHRARFYIVRRCVSMLVCWRD 148
>dbj|BAC42834.1| unknown protein [Arabidopsis thaliana]
          Length = 107

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +3

Query: 69  NSIDISKMKMGGSKRRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWH 209
           +S  IS+      K  ++ K   ++ KEQ+ + YI+RRCV ML+CWH
Sbjct: 58  SSSSISRSSSKKEKGSITQK-YSSLAKEQKGRFYIMRRCVAMLVCWH 103
>ref|NP_671897.1| unknown protein; protein id: At2g29125.1 [Arabidopsis
           thaliana]|gi|22530996|gb|AAM97002.1| unknown protein
           [Arabidopsis thaliana]|gi|23197786|gb|AAN15420.1|
           unknown protein [Arabidopsis thaliana]
          Length = 115

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = +3

Query: 138 AVLKEQRAKLYIIRRCVVMLLCWH 209
           ++ KEQ+A+ YI+RRCV ML+CWH
Sbjct: 87  SLAKEQKARFYIMRRCVAMLVCWH 110
  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 116
effective length of database: 273,859,205
effective search space used: 21087158785
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results