BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.008.Contig1
         (529 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF78910.1|AF248863_1  myosin V [Strongylocentrotus purpu...    32   5.7  
gb|AAF78911.1|AF248864_1  myosin V [Strongylocentrotus purpu...    32   5.7  
emb|CAD21536.1|  putative lysine-rich protein [Taenia solium]      32   5.7  
gb|EAA17525.1|  AT hook motif, putative [Plasmodium yoelii y...    31   7.5  
ref|NP_586287.1|  DYNAMIN-LIKE VACUOLAR PROTEIN SORTING PROT...    31   7.5  

>gb|AAF78910.1|AF248863_1 myosin V [Strongylocentrotus purpuratus]
          Length = 1824

 Score = 31.6 bits (70), Expect = 5.7
 Identities = 19/69 (27%), Positives = 34/69 (48%)
 Frame = -2

Query: 498  CQPYINNKQKIYVEISSGGIDKVGENDSNELEVEIDIYSILRRDRIESVKRENNKTFRKR 319
            C+     K K+ V++    +D  G N +N +E E+D   +L +D    +  ENN+  +  
Sbjct: 1148 CRDLEKEKSKLEVQLEKREVD--GRNRTNNIEHELDHLHLLNKD----LNEENNRVKKDM 1201

Query: 318  WGLTRSRKG 292
              L R+ +G
Sbjct: 1202 DNLRRTLEG 1210



>gb|AAF78911.1|AF248864_1 myosin V [Strongylocentrotus purpuratus]
          Length = 567

 Score = 31.6 bits (70), Expect = 5.7
 Identities = 19/69 (27%), Positives = 34/69 (48%)
 Frame = -2

Query: 498 CQPYINNKQKIYVEISSGGIDKVGENDSNELEVEIDIYSILRRDRIESVKRENNKTFRKR 319
           C+     K K+ V++    +D  G N +N +E E+D   +L +D    +  ENN+  +  
Sbjct: 122 CRDLEKEKSKLEVQLEKREVD--GRNRTNNIEHELDHLHLLNKD----LNEENNRVKKDM 175

Query: 318 WGLTRSRKG 292
             L R+ +G
Sbjct: 176 DNLRRTLEG 184



>emb|CAD21536.1| putative lysine-rich protein [Taenia solium]
          Length = 219

 Score = 31.6 bits (70), Expect = 5.7
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -2

Query: 525 KTSTSLLNLCQPYINNKQKIYVEISSGGIDKVGENDSNELEVEIDIYSILRR--DRIESV 352
           K+ TS+L +  P +    +      + G++K  E D N  E +       +    RI  V
Sbjct: 133 KSKTSILKVSTPSVKASNE------NSGVEKANEADGNGTETKARKPKKSKNALKRIRWV 186

Query: 351 KRENNKTFRKRWGLTRSRKGLTRSR 277
           KR + KTF +R    R+ + L RSR
Sbjct: 187 KRHHKKTFSRR--QRRANRELARSR 209



>gb|EAA17525.1| AT hook motif, putative [Plasmodium yoelii yoelii]
          Length = 1502

 Score = 31.2 bits (69), Expect = 7.5
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -2

Query: 441 IDKVGENDSNELEVEIDIYSILRRDRIESVKRENNKTFRKRWGLTRSRKGLTRS 280
           ID    ND   + +  +IY I+  ++ +S+ +EN   F KR  +T+ RK + R+
Sbjct: 247 IDSKNNNDEKAIRINKNIYRIVNLNKTDSINKEN---FIKR--ITKIRKSMIRN 295



>ref|NP_586287.1| DYNAMIN-LIKE VACUOLAR PROTEIN SORTING PROTEIN [Encephalitozoon
           cuniculi]|gi|19069423|emb|CAD25891.1| DYNAMIN-LIKE
           VACUOLAR PROTEIN SORTING PROTEIN [Encephalitozoon
           cuniculi]
          Length = 628

 Score = 31.2 bits (69), Expect = 7.5
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -2

Query: 528 RKTSTSLLNLCQPYINNKQKIYVEISSGGIDKVGENDSNELEVEID 391
           R   T +  +C+ Y++NK  + + +SS   D +  +D+ +L  E+D
Sbjct: 146 RDICTKITEMCRKYVSNKNALILAVSSANTD-ISNSDALQLAREVD 190



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 115
effective length of database: 275,198,251
effective search space used: 16511895060
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)