BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.073.Contig1
(1924 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL38348.1| unknown protein [Arabidopsis thaliana]|gi|24... 681 0.0
ref|NP_080776.1| RIKEN cDNA 1210002B07 [Mus musculus]|gi|12... 363 7e-99
gb|AAH41801.1| Similar to hypothetical protein DKFZp564B102... 360 3e-98
ref|NP_112596.1| hypothetical protein DKFZp564B1023 [Homo s... 314 3e-84
ref|NP_536783.1| belle; capon [Drosophila melanogaster]|gi|... 231 3e-59
>gb|AAL38348.1| unknown protein [Arabidopsis thaliana]|gi|24899713|gb|AAN65071.1|
unknown protein [Arabidopsis thaliana]
Length = 368
Score = 681 bits (1756), Expect = 0.0
Identities = 353/368 (95%), Positives = 353/368 (95%)
Frame = +1
Query: 682 MQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRE 861
MQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRE
Sbjct: 1 MQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRE 60
Query: 862 LCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIE 1041
LCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIE
Sbjct: 61 LCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIE 120
Query: 1042 LDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQPQVLLFSATISREVEKVGGSLAKEIIL 1221
LDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQPQVLLFSATISREVEKVGGSLAKEIIL
Sbjct: 121 LDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQPQVLLFSATISREVEKVGGSLAKEIIL 180
Query: 1222 VSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAI 1401
VSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAI
Sbjct: 181 VSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAI 240
Query: 1402 TVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTXXXXXXXXXXXXXXXIVFDMPS 1581
TVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVST IVFDMPS
Sbjct: 241 TVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPS 300
Query: 1582 TIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKELINLTSREMH 1761
TIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKELINLTSREMH
Sbjct: 301 TIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKELINLTSREMH 360
Query: 1762 NKKRRVGY 1785
NKKRRVGY
Sbjct: 361 NKKRRVGY 368
>ref|NP_080776.1| RIKEN cDNA 1210002B07 [Mus musculus]|gi|12836314|dbj|BAB23601.1|
unnamed protein product [Mus
musculus]|gi|23272229|gb|AAH23840.1| RIKEN cDNA
1210002B07 gene [Mus musculus]
Length = 619
Score = 363 bits (931), Expect = 7e-99
Identities = 209/511 (40%), Positives = 300/511 (57%), Gaps = 21/511 (4%)
Frame = +1
Query: 307 VKQKSIDQRAPLSGEPKCVICSRYGEYICDETNDDVCSLECK----------QALLRRVD 456
VK S QR P GEP CV+C RYGEYICD+T++DVCSLECK + LR
Sbjct: 91 VKSFSKTQRWPEPGEPVCVVCGRYGEYICDKTDEDVCSLECKAKHLLQVKEGEGSLRPSS 150
Query: 457 SARVFPATD---ECFYVRDPGS-----SSHDAQLLRRKLDIHVQGQGSAVPSTCLDF-HF 609
RV + + FYV + L+++L I VQGQ A P +DF H
Sbjct: 151 PQRVAAEPESPLDAFYVYKEHPFIVTLKEDQIETLKQQLGISVQGQDVARP--IIDFEHC 208
Query: 610 MWTXLLTFFST*KRLAMTFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCT 789
+ L K+ PTPIQMQ IP L G+ +LASADTGSGKTA+FL+P+I R
Sbjct: 209 GFPETLN--QNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAF 266
Query: 790 TYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLP-FKTALVVGGDPMSGQLYR 966
+ + + P A++L PTREL +Q+E QAK L GLP KT L+VGG P+ QLYR
Sbjct: 267 S--------EDKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318
Query: 967 IQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQP 1143
++Q V++II TPGR++D++ + ++ L I V+DE D ML+ GF+ QV+ + +
Sbjct: 319 LRQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDC 378
Query: 1144 QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILR 1323
Q +L SATI +E++ L + + G+ N P +V Q+ +WV+ KK+KLF+IL
Sbjct: 379 QTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILWVEDPAKKKKLFEILN 438
Query: 1324 SQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPV 1503
Q FKPP +V+V ++GADLL+ A+ +TG+ + SIH EK ERRD++ L G+ V
Sbjct: 439 DQKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEV 498
Query: 1504 LVSTXXXXXXXXXXXXXXXIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFP 1683
+VST + FDMPS++ EY+H +GR R+G+ GTAI F+N + + LF
Sbjct: 499 VVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 558
Query: 1684 DLVAALKSSGAAIPKELINLTSREMHNKKRR 1776
D+ +K +G+ +P +L+N S +H +KR+
Sbjct: 559 DVAKRVKPTGSILPPQLLN--SPYLHEQKRK 587
>gb|AAH41801.1| Similar to hypothetical protein DKFZp564B1023 [Homo sapiens]
Length = 619
Score = 360 bits (925), Expect = 3e-98
Identities = 208/511 (40%), Positives = 297/511 (57%), Gaps = 21/511 (4%)
Frame = +1
Query: 307 VKQKSIDQRAPLSGEPKCVICSRYGEYICDETNDDVCSLECKQALLRRV----------- 453
VK S QR GEP CV+C RYGEYICD+T++DVCSLECK L +V
Sbjct: 91 VKSFSKTQRWAEPGEPICVVCGRYGEYICDKTDEDVCSLECKAKHLLQVKEKEEKSKLSN 150
Query: 454 ----DSARVFPATDECFYVRDP---GSSSHDAQLLRRKLDIHVQGQGSAVPSTCLDF-HF 609
DS P Y P + L+++L I VQGQ P +DF H
Sbjct: 151 PQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTRP--IIDFEHC 208
Query: 610 MWTXLLTFFST*KRLAMTFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCT 789
+L K+ PTPIQMQ IP L G+ +LASADTGSGKTA+FL+P+I R
Sbjct: 209 SLPEVLNH--NLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRAL 266
Query: 790 TYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLP-FKTALVVGGDPMSGQLYR 966
+ + P A++L PTREL +Q+E QAK L GLP KT L+VGG P+ QLYR
Sbjct: 267 F--------ESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318
Query: 967 IQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQP- 1143
+QQ V++II TPGR++D++ + ++EL + V+DE D ML+ GF+ QV+ I + +
Sbjct: 319 LQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDC 378
Query: 1144 QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILR 1323
Q +L SATI +E++ L + + G N P V Q+ +WV+ KK+KLF+IL
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438
Query: 1324 SQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPV 1503
+ FKPP +V+V ++GADLL+ A+ +TG+K +SIH EK ER++++ L G+ V
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKRISIHSEKSQIERKNILKGLLEGDYEV 498
Query: 1504 LVSTXXXXXXXXXXXXXXXIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFP 1683
+VST + FDMPS++ EY+H IGR R+G+ GTAI F+N + + LF
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFW 558
Query: 1684 DLVAALKSSGAAIPKELINLTSREMHNKKRR 1776
D+ +K +G+ +P +L+N S +H++KR+
Sbjct: 559 DIAKRVKPTGSILPPQLLN--SPYLHDQKRK 587
>ref|NP_112596.1| hypothetical protein DKFZp564B1023 [Homo
sapiens]|gi|12052748|emb|CAB66546.1| hypothetical protein
[Homo sapiens]
Length = 580
Score = 314 bits (805), Expect = 3e-84
Identities = 185/453 (40%), Positives = 259/453 (56%), Gaps = 21/453 (4%)
Frame = +1
Query: 307 VKQKSIDQRAPLSGEPKCVICSRYGEYICDETNDDVCSLECKQALLRRV----------- 453
VK S QR GEP CV+C RYGEYICD+T++DVCSLECK L +V
Sbjct: 91 VKSFSKTQRWAEPGEPICVVCGRYGEYICDKTDEDVCSLECKAKHLLQVKEKEEKSKLSN 150
Query: 454 ----DSARVFPATDECFYVRDP---GSSSHDAQLLRRKLDIHVQGQGSAVPSTCLDF-HF 609
DS P Y P + L+++L I VQGQ P +DF H
Sbjct: 151 PQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTRP--IIDFEHC 208
Query: 610 MWTXLLTFFST*KRLAMTFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCT 789
+L K+ PTPIQMQ IP L G+ +LASADTGSGKTA+FL+P+I R
Sbjct: 209 SLPEVLNH--NLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRAL 266
Query: 790 TYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLP-FKTALVVGGDPMSGQLYR 966
+ + P A++L PTREL +Q+E QAK L GLP KT L+VGG P+ QLYR
Sbjct: 267 F--------ESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318
Query: 967 IQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQP- 1143
+QQ V++II TPGR++D++ + ++EL + V+DE D ML+ GF+ QV+ I + +
Sbjct: 319 LQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDC 378
Query: 1144 QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILR 1323
Q +L SATI +E++ L + + G N P V Q+ +WV+ KK+KLF+IL
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438
Query: 1324 SQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPV 1503
+ FKPP +V+V ++GADLL+ A+ +TG+K++SIH EK ER++++ L G+ V
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEV 498
Query: 1504 LVSTXXXXXXXXXXXXXXXIVFDMPSTIKEYIH 1602
+VST + FDMPS++ EY+H
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVH 531
>ref|NP_536783.1| belle; capon [Drosophila melanogaster]|gi|7299061|gb|AAF54262.1|
CG9748-PA [Drosophila melanogaster]
Length = 798
Score = 231 bits (589), Expect = 3e-59
Identities = 132/389 (33%), Positives = 209/389 (52%), Gaps = 17/389 (4%)
Frame = +1
Query: 667 PTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHP-------SDQRR 825
PTP+Q AIP + G+ L+A A TGSGKTA+FLVPI+++ P S +++
Sbjct: 318 PTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQ 377
Query: 826 NPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPG 1005
PL +VLAPTREL Q+ ++AK + A++ GG+ S Q+ + +G LI+ TPG
Sbjct: 378 YPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPG 437
Query: 1006 RVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQP-----QVLLFSATI 1170
R+ D++++ + L+NI VLDE D ML GF Q+ +I + L+ P Q L+FSAT
Sbjct: 438 RLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATF 497
Query: 1171 SREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRS----QNHF 1338
++++++ I +++G ++ + Q +WV K+ L D+L S +
Sbjct: 498 PKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYT 557
Query: 1339 KPP-AVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVST 1515
K +++V ++ GAD L + SIHG++ KER + + F G+ P+LV+T
Sbjct: 558 KDSLTLIFVETKKGADSLEEFL-YQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVAT 616
Query: 1516 XXXXXXXXXXXXXXXIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVA 1695
I FD+PS ++EY+H IGR RMG G A F NE +RN+ DL+
Sbjct: 617 AVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLE 676
Query: 1696 ALKSSGAAIPKELINLTSREMHNKKRRVG 1782
L + IP + +++S H +R G
Sbjct: 677 LLIETKQEIPSFMEDMSSDRGHGGAKRAG 705
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 129
effective length of database: 256,451,607
effective search space used: 131046771177
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)