BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AI997520.x
         (389 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL38314.1|  unknown protein [Arabidopsis thaliana]             40   0.007
gb|AAA37770.1|  T-cell receptor antigen                            33   0.63 
ref|NP_038847.1|  histocompatibility 2, M region locus 3 [Mu...    33   0.63 
gb|AAA37771.1|  T-cell receptor antigen                            33   0.63 
gb|AAH31984.1|  histocompatibility 2, M region locus 3 [Mus ...    33   0.63 

>gb|AAL38314.1| unknown protein [Arabidopsis thaliana]
          Length = 45

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -2

Query: 358 EEKSEGKQSQVRLLFWES 305
           EEKSEGKQSQVRLLFWES
Sbjct: 28  EEKSEGKQSQVRLLFWES 45



>gb|AAA37770.1| T-cell receptor antigen
          Length = 274

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 16  EFPYFWSELILVVKNSTSNQLHELETLLKHRYQSEG 123
           E P +W EL L VKN   +    L TLL++  QSEG
Sbjct: 55  ERPEYWKELKLKVKNIAQSARANLRTLLRYYNQSEG 90



>ref|NP_038847.1| histocompatibility 2, M region locus 3 [Mus
           musculus]|gi|619937|gb|AAA60335.1| MHC class I antigen
           H-2M3
          Length = 336

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 16  EFPYFWSELILVVKNSTSNQLHELETLLKHRYQSEG 123
           E P +W EL L VKN   +    L TLL++  QSEG
Sbjct: 79  ERPEYWKELKLKVKNIAQSARANLRTLLRYYNQSEG 114



>gb|AAA37771.1| T-cell receptor antigen
          Length = 274

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 16  EFPYFWSELILVVKNSTSNQLHELETLLKHRYQSEG 123
           E P +W EL L VKN   +    L TLL++  QSEG
Sbjct: 55  ERPEYWKELKLKVKNIAQSARANLRTLLRYYNQSEG 90



>gb|AAH31984.1| histocompatibility 2, M region locus 3 [Mus musculus]
          Length = 336

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 16  EFPYFWSELILVVKNSTSNQLHELETLLKHRYQSEG 123
           E P +W EL L VKN   +    L TLL++  QSEG
Sbjct: 79  ERPEYWKELKLKVKNIAQSARANLRTLLRYYNQSEG 114



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 105
effective length of database: 288,588,711
effective search space used: 6926129064
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)