BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.007.Contig1
(641 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174039.1| leucine-rich repeat transmembrane protein ... 72 6e-12
ref|NP_565290.1| expressed protein; protein id: At2g02810.1... 52 5e-06
gb|AAM48281.1| UDP-galactose/UDP-glucose transporter [Arabi... 52 5e-06
gb|AAM64984.1| unknown [Arabidopsis thaliana] 52 5e-06
gb|AAM66005.1| unknown [Arabidopsis thaliana] 49 7e-05
>ref|NP_174039.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g27190.1 [Arabidopsis
thaliana]|gi|8778873|gb|AAF79872.1|AC000348_25 T7N9.25
[Arabidopsis thaliana]
Length = 601
Score = 72.0 bits (175), Expect = 6e-12
Identities = 41/67 (61%), Positives = 44/67 (65%), Gaps = 14/67 (20%)
Frame = +3
Query: 462 IGAVGSLYVALVIFW*FFIREGSRKKKSYGAQNLR--------------MIVTFFQKPIV 599
+GAVGSL V LVIFW FFIREGSRKKK YGA + + VT FQKPIV
Sbjct: 228 LGAVGSLCVGLVIFWWFFIREGSRKKKGYGAGKSKDDSDWIGLLRSHKLVQVTLFQKPIV 287
Query: 600 KIKLGDL 620
KIKLGDL
Sbjct: 288 KIKLGDL 294
>ref|NP_565290.1| expressed protein; protein id: At2g02810.1, supported by cDNA:
35441., supported by cDNA: gi_13877590 [Arabidopsis
thaliana]|gi|7488132|pir||T00847 probable membrane
protein At2g02810 - Arabidopsis
thaliana|gi|2947060|gb|AAC05341.1| expressed protein
[Arabidopsis
thaliana]|gi|13877591|gb|AAK43873.1|AF370496_1 Unknown
protein [Arabidopsis thaliana]
Length = 332
Score = 52.4 bits (124), Expect = 5e-06
Identities = 20/32 (62%), Positives = 25/32 (77%)
Frame = +2
Query: 215 AIVCFV*LRLRFIVIKLWSNAGNGGPPWWTYW 310
++VC + +I+IKLWSNAGNGG PWWTYW
Sbjct: 58 SVVCLI---WSYIMIKLWSNAGNGGAPWWTYW 86
>gb|AAM48281.1| UDP-galactose/UDP-glucose transporter [Arabidopsis thaliana]
Length = 332
Score = 52.4 bits (124), Expect = 5e-06
Identities = 20/32 (62%), Positives = 25/32 (77%)
Frame = +2
Query: 215 AIVCFV*LRLRFIVIKLWSNAGNGGPPWWTYW 310
++VC + +I+IKLWSNAGNGG PWWTYW
Sbjct: 58 SVVCLI---WSYIMIKLWSNAGNGGAPWWTYW 86
>gb|AAM64984.1| unknown [Arabidopsis thaliana]
Length = 332
Score = 52.4 bits (124), Expect = 5e-06
Identities = 20/32 (62%), Positives = 25/32 (77%)
Frame = +2
Query: 215 AIVCFV*LRLRFIVIKLWSNAGNGGPPWWTYW 310
++VC + +I+IKLWSNAGNGG PWWTYW
Sbjct: 58 SVVCLI---WSYIMIKLWSNAGNGGAPWWTYW 86
>gb|AAM66005.1| unknown [Arabidopsis thaliana]
Length = 329
Score = 48.5 bits (114), Expect = 7e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 218 IVCFV*LRLRFIVIKLWSNAGNGGPPWWTYW 310
++C V +I+IKLWSN G+GG PWWTYW
Sbjct: 59 VICLV---WSYIMIKLWSNGGSGGAPWWTYW 86
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 25762205735
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)