BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 12744.f
         (630 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM67373.1|  unknown [Arabidopsis thaliana]                    111   9e-24
ref|NP_174039.1|  leucine-rich repeat transmembrane protein ...    79   5e-14
ref|NP_565290.1|  expressed protein; protein id: At2g02810.1...    67   2e-10
gb|AAM48281.1|  UDP-galactose/UDP-glucose transporter [Arabi...    67   2e-10
gb|AAM64984.1|  unknown [Arabidopsis thaliana]                     67   2e-10

>gb|AAM67373.1| unknown [Arabidopsis thaliana]
          Length = 50

 Score =  111 bits (277), Expect = 9e-24
 Identities = 50/50 (100%), Positives = 50/50 (100%)
 Frame = +2

Query: 134 MTIGRMIKLWSNAGNGGAPWWTYWSVGITIMVMGTSVYEISYAFPAYSIG 283
           MTIGRMIKLWSNAGNGGAPWWTYWSVGITIMVMGTSVYEISYAFPAYSIG
Sbjct: 1   MTIGRMIKLWSNAGNGGAPWWTYWSVGITIMVMGTSVYEISYAFPAYSIG 50



>ref|NP_174039.1| leucine-rich repeat transmembrane protein kinase, putative; protein
           id: At1g27190.1 [Arabidopsis
           thaliana]|gi|8778873|gb|AAF79872.1|AC000348_25 T7N9.25
           [Arabidopsis thaliana]
          Length = 601

 Score = 79.0 bits (193), Expect = 5e-14
 Identities = 47/76 (61%), Positives = 52/76 (67%), Gaps = 17/76 (22%)
 Frame = +2

Query: 452 IGAVGSLYVGLVIFW*FFIREGSRKKKSYGAENLR--------------MIVTLFQKPIV 589
           +GAVGSL VGLVIFW FFIREGSRKKK YGA   +              + VTLFQKPIV
Sbjct: 228 LGAVGSLCVGLVIFWWFFIREGSRKKKGYGAGKSKDDSDWIGLLRSHKLVQVTLFQKPIV 287

Query: 590 KIKLGDLI---DNFSS 628
           KIKLGDL+   +NFSS
Sbjct: 288 KIKLGDLMAATNNFSS 303



>ref|NP_565290.1| expressed protein; protein id: At2g02810.1, supported by cDNA:
           35441., supported by cDNA: gi_13877590 [Arabidopsis
           thaliana]|gi|7488132|pir||T00847 probable membrane
           protein At2g02810 - Arabidopsis
           thaliana|gi|2947060|gb|AAC05341.1| expressed protein
           [Arabidopsis
           thaliana]|gi|13877591|gb|AAK43873.1|AF370496_1 Unknown
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 34/72 (47%), Positives = 36/72 (49%), Gaps = 30/72 (41%)
 Frame = +2

Query: 149 MIKLWSNAGNGGAPWWTYWSVGIT------------------------------IMVMGT 238
           MIKLWSNAGNGGAPWWTYWS GIT                              +M+MGT
Sbjct: 68  MIKLWSNAGNGGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGT 127

Query: 239 SVYEISYAFPAY 274
            VY I Y FP Y
Sbjct: 128 LVYGIRYTFPEY 139



>gb|AAM48281.1| UDP-galactose/UDP-glucose transporter [Arabidopsis thaliana]
          Length = 332

 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 34/72 (47%), Positives = 36/72 (49%), Gaps = 30/72 (41%)
 Frame = +2

Query: 149 MIKLWSNAGNGGAPWWTYWSVGIT------------------------------IMVMGT 238
           MIKLWSNAGNGGAPWWTYWS GIT                              +M+MGT
Sbjct: 68  MIKLWSNAGNGGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGT 127

Query: 239 SVYEISYAFPAY 274
            VY I Y FP Y
Sbjct: 128 LVYGIRYTFPEY 139



>gb|AAM64984.1| unknown [Arabidopsis thaliana]
          Length = 332

 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 34/72 (47%), Positives = 36/72 (49%), Gaps = 30/72 (41%)
 Frame = +2

Query: 149 MIKLWSNAGNGGAPWWTYWSVGIT------------------------------IMVMGT 238
           MIKLWSNAGNGGAPWWTYWS GIT                              +M+MGT
Sbjct: 68  MIKLWSNAGNGGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGT 127

Query: 239 SVYEISYAFPAY 274
            VY I Y FP Y
Sbjct: 128 LVYGIRYTFPEY 139



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 24677481283
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)