BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU239857.f
         (531 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_680453.1|  Expressed protein; protein id: At5g58005.1...   246   9e-65
sp|P39205|CIN_DROME  Molybdenum cofactor synthesis protein c...    49   4e-05
ref|NP_013972.1|  Hypothetical ORF; Ymr244c-ap [Saccharomyce...    41   0.007
ref|XP_059114.1|  similar to Molybdenum cofactor synthesis p...    40   0.013
gb|AAH25793.1|  similar to Molybdenum cofactor synthesis pro...    40   0.013

>ref|NP_680453.1| Expressed protein; protein id: At5g58005.1, supported by cDNA:
           gi_19423920 [Arabidopsis
           thaliana]|gi|19423921|gb|AAL87352.1| unknown protein
           [Arabidopsis thaliana]|gi|21689763|gb|AAM67525.1|
           unknown protein [Arabidopsis
           thaliana]|gi|26452952|dbj|BAC43552.1| unknown protein
           [Arabidopsis thaliana]
          Length = 116

 Score =  246 bits (629), Expect = 9e-65
 Identities = 116/116 (100%), Positives = 116/116 (100%)
 Frame = +1

Query: 43  MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 222
           MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 223 NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPSPST 390
           NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPSPST
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPSPST 116



>sp|P39205|CIN_DROME Molybdenum cofactor synthesis protein
           cinnamon|gi|6691806|emb|CAB65851.1| alternatively
           spliced form [Drosophila melanogaster]
          Length = 674

 Score = 48.9 bits (115), Expect = 4e-05
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = +1

Query: 109 RDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECSNSRTQFVNNCRSSWVKHFDRE 285
           R  C+  RD ++ CLE+ +   P   +T G   P  C + R  F  +C   WVKHFDR+
Sbjct: 9   RKKCWNNRDEYWKCLEEHA---PKHSSTSGEKVPTPCQSLRKSFEQSCPGQWVKHFDRK 64



>ref|NP_013972.1| Hypothetical ORF; Ymr244c-ap [Saccharomyces
           cerevisiae]|gi|2131847|pir||S69858 hypothetical protein
           YMR244c-a - yeast (Saccharomyces cerevisiae)
          Length = 104

 Score = 41.2 bits (95), Expect = 0.007
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
 Frame = +1

Query: 109 RDACYKARDAFYACLEKE---SGKKPTEIATVGLLYPKECSNSRTQFVNNCRSSWVKHFD 279
           R  C+++RDAF+ CL+K        P    ++       C     +F  NC  SW+K+F 
Sbjct: 22  RKLCWESRDAFFQCLDKADILDAMDPKNSKSI----KSHCKVENEKFEENCAHSWIKYFK 77

Query: 280 R----EYCRNKRVQRLLDDGDERK 339
                ++ R + ++R+  +  +R+
Sbjct: 78  EKRVIDFKREQTIKRIEQEAKQRE 101



>ref|XP_059114.1| similar to Molybdenum cofactor synthesis protein cinnamon [Homo
           sapiens]
          Length = 125

 Score = 40.4 bits (93), Expect = 0.013
 Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
 Frame = +1

Query: 100 LKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECSNSRTQFVNNCRSSWVKHFD 279
           +K R  C+ ARD ++ CL++             L    +C   R+ F ++C   W+K+FD
Sbjct: 52  MKERQVCWGARDEYWKCLDEN------------LEDASQCKKLRSSFESSCPQQWIKYFD 99

Query: 280 --REYCRNK 300
             R+Y + K
Sbjct: 100 KRRDYLKFK 108



>gb|AAH25793.1| similar to Molybdenum cofactor synthesis protein cinnamon [Homo
           sapiens]
          Length = 106

 Score = 40.4 bits (93), Expect = 0.013
 Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
 Frame = +1

Query: 100 LKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECSNSRTQFVNNCRSSWVKHFD 279
           +K R  C+ ARD ++ CL++             L    +C   R+ F ++C   W+K+FD
Sbjct: 33  MKERQVCWGARDEYWKCLDEN------------LEDASQCKKLRSSFESSCPQQWIKYFD 80

Query: 280 --REYCRNK 300
             R+Y + K
Sbjct: 81  KRRDYLKFK 89



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 115
effective length of database: 275,198,251
effective search space used: 16787093311
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)